Hydrolytic cleavage of DNA by quercetin manganese(II) complexes

Quercetin manganese(II) complexes were investigated focusing on its DNA hydrolytic activity. The complexes successfully promote the cleavage of plasmid DNA, producing single and double DNA strand breaks. The amount of conversion of supercoiled form (SC) of plasmid DNA to the nicked circular form (NC) depends on the concentration of the complex as well as the duration of incubation of the complexes with DNA. The maximum rate of conversion of the supercoiled form to the nicked circular form at pH 7.2 in the presence of 100 μM of the complexes is found to be 1.32 × 10⁻⁴ s⁻¹. The hydrolytic cleavage of DNA by the complexes was supported by the evidence from free radical quenching, thiobarbituric acid-reactive substances (TBARS) assay and T4 ligase ligation.     

Crystal structures and DNA cleavage activities of two mononuclear nickel(II) complexes

Two new nickel complexes, [Ni(L₁)₂]?·?2(CH₃OH) (1) and [Ni(L₂)₂]?·?2(CH₃OH) (2), where HL₁ is 4-chloro-2-((2-hydroxy-ethylimino)methyl)phenol and HL₂ is 4-fluoro-2-((2-hydroxy-ethylimino)methyl)phenol, have been synthesized and characterized by single-crystal X-ray diffraction and UV-Vis absorption spectra. The coordination polyhedron of nickel(II) in each complex can be described as distorted octahedral. The interactions between the complexes and calf thymus (CT)-DNA/DNA were investigated by UV-Vis spectra and agarose gel electrophoresis. The results show that the complex transforms supercoiled to nicked form and exhibits effective DNA cleavage activity via hydrolytic cleavage mechanism.     

Oxidative and hydrolytic DNA cleavage by Cu(II) complexes of salicylidene tyrosine schiff base and 1,10 phenanthroline/bipyridine

Ternary Cu(II) complexes [Cu(II)(saltyr)(B)] (1,2), (saltyr = salicylidene tyrosine, B = 1,10 phenanthroline (1) or 2,2′ bipyridine (2)) were synthesized and characterized by various techniques. The complexes exhibit square pyramidal (CuN₃O₂) geometry. CT-DNA binding studies revealed that the complexes show good binding propensity (K_b = 3.47 × 10⁴ M⁻¹ and 3.01 × 10⁴ M⁻¹ for 1 and 2, respectively). The role of these complexes in the oxidative and hydrolytic DNA cleavage was studied. The catalytic ability of 1 and 2 follows the order: 1 > 2. The rate constants for the hydrolysis of phosphodiester bond were determined as 2.80 h⁻¹ and 2.11 h⁻¹ for 1 and 2, respectively. It amounts to (0.58-0.77) × 10⁸ fold rate enhancement compared to non-catalyzed DNA cleavage, which is significant.     

Oxidative DNA cleavage by Cu(II) complexes of 1,10-phenanthroline-5,6-dione

A dimeric dichloro-bridged copper(II) complex [Cu₂(pdon)₂Cl₄] · 2DMF (1) and two mononuclear copper(II) complexes [Cu(pdon)(DMSO)Cl₂] · DMSO · H₂O (2) and [Cu(pdon)₃] · (ClO₄)₂ · 2.25CH₃CN · 6H₂O (3) (pdon = 1,10-phenanthroline-5,6-dione) have been synthesized and characterized. Variable-temperature magnetic susceptibility studies indicate the existence of weak anti-ferromagnetic coupling in the binuclear complex. The interaction of these complexes with CT-DNA (calf thymus DNA) has been studied using absorption and emission spectral methods. The apparent binding constants (K _app) for 1, 2 and 3 are 5.20 × 10⁵, 2.68 × 10⁵ and 7.05 × 10⁵ M^?1, respectively, showing moderate intercalative binding modes. All of these complexes cleave plasmid DNA to nicked DNA in a sequential manner as the concentration or reaction time is increased. The cleavage mechanism between the complex and plasmid DNA is likely to involve singlet oxygen ¹O₂ and ?OH as reactive oxygen species.     

Synthesis,characterization, DNA binding and cleavage activity of homoleptic zinc(II) β-oxodithioester chelate complexes

New homoleptic zinc(II) complexes, [Zn(L)₂], where L = methyl-3-hydroxy-(3-pyridyl)-2-propenedithioate L1 1, and methyl-3-hydroxy-(4-pyridyl)-2-propenedithioate L2 2, have been synthesized and characterized by elemental (C, H, and N) analysis, ESI-MS, and (IR, UV–vis, NMR) spectroscopy; the structure of 1 has been deduced by X-ray crystallography. The DNA binding and cleavage activity of the complexes have been studied. The cleavage potential of pBR322 DNA by 1 and 2 has been checked. Complex 1, which contains nitrogen of the pyridine group in the 3-position enhances DNA cleavage potential in the presence of ascorbic acid; however, the complex is protective against DNA cleavage in the presence of DMSO or H₂O₂. Also, 1 causes cytotoxicity against the MCF-7 breast cancer cell line. The efficient cytotoxic activity and DNA cleavage ability of 1 in the presence of ascorbic acid shows its potential anticancer properties and the need for further investigations of its potential as an anticancer drug.     

DNA cleavage activities of tetraazamacrocyclic oxamido nickel(II) complexes

The DNA cleavage activities of nickel(II) ion and four closely related macrocyclic nickel(II) complexes NiL¹ ∼ NiL⁴ in the absence of any added redox cofactors are compared and the structure of NiL³ methanol solvate has been characterized by single crystal X-ray analysis, where L¹ ∼ L⁴ are the dianions of tetraazamacrocyclic oxamido Schiff bases. In NiL³·MeOH, the macrocyclic [N₄] ligand coordinates to the central Ni(II) ion forming a distorted square–planar geometry. The adjacent mononuclear molecules are linked by O–H?O hydrogen bonds and Ni?O and Ni?L van der Waals forces into 2D supramolecular structure. Agarose gel electrophoresis studies indicate that the ability of these nickel(II) complexes to cleave DNA is highly dependent upon the ligand employed. In the absence of any added oxidizing agents, only NiL³ is a relatively good DNA cleavage agent, and the process of plasmid DNA cleavage is much sensitive to ionic strength and pH value. The NiL³-mediated DNA cleavage reaction is a typical pseudo-first-order consecutive reaction, and the rate constants of 0.148 ± 0.007 h⁻¹ (k₁) and 0.0118 ± 0.0018 h⁻¹ (k₂) for the conversion of supercoiled to nicked DNA and nicked to linear DNA are obtained in presence of 0.5 mmol L⁻¹ NiL³. The results of DNA cleavage experiments, combining with those of circular dichroism (CD) and fluorescence spectroscopy indicate that the main binding modes between DNA and the complexes should be groove binding and electrostatic interaction.     

Phenolate-bridged zinc(II) complexes relevant to biological phosphoester cleavage

Three zinc complexes based on 2,6-bis(N-2-pyridylmethyl)formimidoyl-4-methylphenolate (HL) by employing Zn(ClO₄)₂, Zn(CH₃COO)₂, and ZnCl₂ have been synthesized and investigated as functional models of phosphoesterases. The molecular structure of [{Zn₂L(µ ³-OH)(H₂O)}₂](ClO₄)₄ (1) obtained by reacting zinc perchlorate with HL was determined by X-ray diffraction analysis, revealing a tetranuclear species with four zinc centers and two ligands. Two zinc ions are accommodated within the two compartments of each ligand and are bridged by an additional hydroxide leading to Zn–Zn distances of 3.1235(9) and 3.1268(9)?Å, respectively. The hydroxide is involved in an additional bridge to the second LZn₂ moiety forming a µ ³-OH. A water molecule is coordinated to two of the four zinc ions. The occurrence of a hydroxide group and of a coordinated water is relevant to the structure found in the native enzyme. The hydrolysis of the phosphoester bis(p-nitrophenol)phosphate ester (BNPP) in a mixture of DMSO and water at 50°C catalyzed by the three zinc compounds has been investigated. High hydrolytic activity was found for all three compounds but differed significantly depending on the nature of the counterion; the chloro derivative was found to be most active, while the perchlorate compound showed the least activity.     

New anticancer zinc(II) complexes comprising thiosemicarbazones of saturated ring: structure,DNA/protein binding,DNA cleavage,topoisomerase‐1 inhibition and anti‐proliferation studies

The reaction of the thiosemicarbazones (CH₂)₄C?NN(H)C(?S)NHR (R = H, Me) with zinc(II) acetate in methanolic solution proceeds readily under mild conditions to form stable mononuclear complexes Zn[(CH₂)₄C?NN?C(S)NHR]₂. DNA interaction studies show that the zinc(II) complexes bind to DNA via groove mode and exhibit efficient DNA cleavage activity in the presence of hydrogen peroxide. Also, the complexes display a binding affinity to bovine serum albumin protein with K_BSA values of ca 10⁵ M^?1. Topoisomerase catalytic inhibition studies suggest that both complexes are efficient topoisomerase‐I impeders. Furthermore, the anti‐proliferative effects of the two complexes on five human tumor cell lines (Caki‐2, MCF‐7, CaSki, NCI‐H322M and Co‐115) indicate that both complexes have the potential to act as effective anticancer drugs. Copyright © 2016 John Wiley & Sons, Ltd.     

Synthesis and DNA cleavage properties of ternary Cu(II) complexes containing histamine and amino acids

The ternary complexes of [Cu^II(Hist)(Tyr)]⁺1 and [Cu^II(Hist)(Trp)]⁺2 have been synthesized, structurally characterized and their DNA binding and cleavage abilities probed. The intrinsic binding constants (K_b) for complexes/CT-DNA were also determined (K_b = 2.7 × 10² for complex 1 and K_b = 2.2 × 10² for complex 2). These complexes exhibit their nuclease activity on plasmid DNA, which seems to depend on the nature of the aromatic moiety. The DNA hydrolytic cleavage rate constants were also determined for complexes 1 and 2, which are 0.91 and 0.79 h⁻¹, respectively.     

钌配合物断裂DNA及其机理研究

DNA是遗传信息的携带者和基因表达的物质基础,金属配合物与DNA的相互作用研究受到广泛关注,成为生物无机化学的重要研究内容之一.与其他类型金属配合物相比,钌配合物具有良好的热力学稳定性以及丰富的光化学、光物理和氧化还原特性,其作为DNA断裂试剂也引起人们的极大兴趣.以近年一些代表性的研究工作为例,本文对钌配合物在DNA断裂作用机制方面的研究进展进行了综述.     

Synthesis,crystal structure,DNA binding,and oxidative cleavage activity of copper(II)-bipyridyl complexes containing tetraalkylammonium groups

Two copper(II) complexes of disubstituted 2,2′-bipyridine (bpy = 2, 2′-bipyridine) with tetraalkylammonium groups, [Cu(L¹)₂Br](ClO₄)₅·2H₂O (1) and [Cu(L²)₂Br](ClO₄)₅·H₂O (2) (L¹ = [4, 4′-(Et₃NCH₂)₂-bpy]²⁺, L² = [4, 4′-((n-Bu)₃NCH₂)₂-bpy]²⁺), have been synthesized and characterized. X-ray crystallographic study of 1 indicates that Cu(II) is a distorted trigonal bipyramidal or square pyramid. DNA binding of both complexes was studied by UV spectroscopic titration. In the presence of reducing reagents, the cleavage of plasmid pBR322 DNA mediated by both complexes was investigated and efficient oxidative cleavage of DNA was observed. Mechanistic study with reactive oxygen scavengers indicates that hydrogen peroxide and singlet oxygen participate in DNA cleavage.     

Synthesis,crystal structures,DNA/bovine serum albumin binding,DNA cleavage and cytotoxicity of five mononuclear zinc(II) complexes

Five new mononuclear zinc(II) complexes containing ligands with extended planar phenanthroline moieties (dipyrido‐[3,2‐a:2′,3′‐c]phenazine (dppz) or dipyrido[3,2‐d:2′,3′‐f] quinoxaline (dpq)), namely [Zn(dppz)(acac)₂]⋅CH₃OH ( 1 ), [Zn(dppz)(dbm)(OAc)] ( 2 ), [Zn(dpq)(dbm) (OAc)] 1.5H₂O ( 3 ), [Zn(dpq)(tfnb)(OAc)] ( 4 ) and [Zn(dpq)(tfnb)₂] ( 5 ), where acac = acetylacetonate, tfnb = benzoyltrifluoroacetone and dbm = dibenzoylmethane, were synthesized and structurally characterized. The binding ability of complexes 1 – 5 with calf thymus DNA was investigated by spectroscopic titration methods and viscosity measurements. Results indicate that all complexes bind to calf thymus DNA via intercalative mode, and the DNA binding affinities of dppz complexes 1 and 2 are apparently stronger than those of dpq complexes 3 – 5 . DNA photocleavage experiments reveal that these complexes are efficient DNA cleaving agents and they are more active in UV‐A (365 nm) than in visible light. In particular, the in vitro cytotoxicity of the complexes for human cancer cell line A549 demonstrates that the five compounds have anticancer activity with low IC₅₀ values. Meanwhile, interaction of the complexes with bovine serum albumin investigated using UV–visible and fluorescence methods indicates that all complexes can quench the intrinsic fluorescence of bovine serum albumin in a static quenching process.     

DNA binding and oxidative cleavage activity of ternary (l-proline)copper(II) complexes of heterocyclic bases

Ternary copper(II) complexes [Cu(l-pro)(B)(H₂O)](NO₃) (1, 2) where l-pro = l-proline, B is a N,N-donor heterocyclic base, viz. 2,2′-bipyridine (bpy, 1), 1,10-phenanthroline (phen, 2), are synthesized, characterized, and their DNA binding and cleavage activity studied. The bpy complex (1) is structurally characterized by single-crystal X-ray crystallography. The complexes show the presence of a distorted square-pyramidal (4 + 1) CuN₃O₂ coordination geometry. Complex [Cu(l-pro)(bpy)(H₂O)](NO₃) (1) crystallizes in the triclinic space group P1 with unit cell parameters: a = 7.082(3) Å, b = 10.483(5) Å, c = 11.581(5) Å, α = 89.700(7)°, β = 83.488(8)°, γ = 84.109(8)° and V = 849.7(7) Å³. The one-electron paramagnetic complexes display a d–d band near 600 nm in water and show a cyclic voltammetric response due to Cu(II)/Cu(I) couple near 0.1 V (versus SCE) in Tris–HCl buffer–0.1 M KCl. Binding interactions of the complexes with calf thymus (CT) DNA have been investigated by emission, absorption, viscosity and DNA thermal denaturation studies. The phen complex displays significant binding propensity to the CT DNA giving an order: 2 (phen)  1 (bpy). The bpy complex does not show any apparent binding to the DNA and hence poor cleavage efficiency. Complex 2 shows efficient oxidative cleavage of SC-DNA in the presence of 3-mercaptopropionic acid (MPA) involving hydroxyl radical species as evidenced from the control data showing inhibition of DNA cleavage in the presence of DMSO and catalase.     

Synthesis, characterization, DNA binding and cleavage studies of chiral Ru(II) salen complexes

Interaction of chiral Ru(II) salen complexes (S)-1 and (R)-1 with Calf Thymus DNA (CT-DNA) was studied by absorption spectroscopy, competitive binding study, viscosity measurements, CD measurements, thermal denaturation study and cleavage studies by agarose gel electrophoresis. The DNA binding affinity of (S)-1 (6.25 × 10³ M⁻¹) was found to be greater than (R)-1 (3.0 × 10³ M⁻¹). The antimicrobial studies of these complexes on five different gram (+)/(−) bacteria and three different fungal organisms showed selective inhibition of the growth of gram (+) bacteria and were not affective against gram (−) and fungal organisms. Further, the (S)-1 enantiomer inhibited the growth of organisms to a greater extent as compared to (R)-1 enantiomer.     

DNA cleavage promoted by diethylenetriaminepentaacetic acid （DTPA） derivatives

DTPA and its two derivatives were synthesized and used as catalysts in DNA cleavage.Under physiological conditions,a series of experiments have been done.The effects of DNA cleavage with three ligands were studied under different concentrations, cleavage time,and pH values.The results strongly suggested that the plasmid DNA(pUC 19) can be cleaved efficiently by CITC-DTPA. For the cleavage reaction catalyzed by CITC-DTPA,FormⅠDNA could convert to FormⅡmostly,and the DNA-cleavage mechanism involved an oxid...     

Photoenhanced oxidative DNA cleavage with non-heme iron(II) complexes

The DNA cleavage activity of iron(II) complexes of a series of monotopic pentadentate N,N-bis(2-pyridylmethyl)-N-bis(2-pyridyl)methylamine (N4Py)-derived ligands (1-5) was investigated under laser irradiation at 473, 400.8, and 355 nm in the absence of a reducing agent and compared to that under ambient lighting. A significant increase in activity was observed under laser irradiation, which is dependent on the structural characteristics of the complexes and the wavelength and power of irradiation. Under photoirradiation at 355 nm, direct double-stand DNA cleavage activity was observed with Fe(II)-1 and Fe(II)-3-5, and a 56-fold increase in the single-strand cleavage activity was observed with Fe(II)-2. Mechanistic investigations revealed that O(2)(?-), (1)O(2), and OH(?) contribute to the photoenhanced DNA cleavage activity, and that their relative contribution is dependent on the wavelength. It is proposed that the origin of the increase in activity is the photoenhanced formation of an Fe(III)OOH intermediate as the active species or precursor.     

Electrochemical,magnetic, catalytic and DNA cleavage studies of binuclear copper(II) complexes derived from pendant substituted tetraaza macrobicyclic compartmental ligands

A series of macrobicyclic unsymmetrical binuclear copper(II) complexes of compartmental ligands were synthesized from the Schiff base condensation of 1,8[N,N′-bis{(3-formyl-2-hydroxy-5-methyl)benzyl}]-1,4,8,11- tetraaza-5,5,7,12,12,14-hexa methylcyclotetradecane with diamines like 1,2-diamino ethane, 1,3-diamino propane, 1,4-diaminobutane, 1,2-diaminobenzene and 1,8-diaminonaphthalene. The complexes were characterized by elemental and spectral analysis. Electrochemical studies of the copper(II) complexes show two irreversible one-electron reduction processes around E¹_pc = −0.70 to −1.10 V and E²_pc = −0.98 to −1.36 V. ESR spectra of the binuclear copper(II) complexes show a broad signal at g = 2.10 and μ_eff values in the range 1.46–1.59 BM, which convey the presence of antiferromagnetic coupling. Cryomagnetic investigation of the binuclear complexes [Cu₂L³(ClO₄)](ClO₄) and [Cu₂L⁴(ClO₄)](ClO₄) show that the observed −2J values are 144 and 216 cm⁻¹, respectively. The observed initial rate (V_in) for the catalytic hydrolysis of p-nitrophenyl phosphate by the binuclear copper(II) complexes were in the range 1.8 × 10⁻⁵ to 2.1 × 10⁻⁵ Ms⁻¹. The initial rate (V_in) for the catalytic oxidation of catechol to o-quinone by the binuclear copper(II) complexes were in the range 2.7 × 10⁻⁵ to 3.5 × 10⁻⁵ Ms⁻¹. The copper(II) complexes have been found to promote cleavage of plasmid pBR 322 DNA from the supercoiled form I to the open circular form II.     

Synthesis,crystal structure,DNA binding,and DNA cleavage of a zinc complex containing N,N-bis(2-pyridylmethyl)amine

A water-soluble zinc complex, [Zn(bpea)Cl₂] (1) (bpea?=?N,N-bis(2-pyridylmethyl)ethylamine), was prepared to serve as a nuclease mimic. The complex was characterized by X-ray, infrared, and UV spectroscopy. Interactions of the complex with calf thymus-DNA (ct-DNA) have been investigated by UV absorption and fluorescence spectroscopies; the mode of ct-DNA binding for 1 has been proposed. DNA cleavage activities by 1 were performed in the absence of external agents. The influences of different complex concentrations or reaction times on DNA cleavage were studied.