共查询到20条相似文献,搜索用时 609 毫秒
1.
To elucidate the role of guanosine in DNA strand breaks caused by low‐energy electrons (LEEs), theoretical investigations of the LEE attachment‐induced C? O σ‐bonds and N‐glycosidic bond breaking of 2′‐deoxyguanosine‐3′,5′‐diphosphate (3′,5′‐dGMP) were performed using the B3LYP/DZP++ approach. The results reveal possible reaction pathways in the gas phase and in aqueous solutions. In the gas phase LEEs could attach to the phosphate group adjacent to the guanosine to form a radical anion. However, the small vertical detachment energy (VDE) of the radical anion of guanosine 3′,5′‐diphosphate in the gas phase excludes either C? O bond cleavage or N‐glycosidic bond breaking. In the presence of the polarizable surroundings, the solvent effects dramatically increase the electron affinities of the 3′,5′‐dGDP and the VDE of 3′,5′‐dGDP?. Furthermore, the solvent–solute interactions greatly reduce the activation barriers of the C? O bond cleavage to 1.06–3.56 kcal mol?1. These low‐energy barriers ensure that either C5′? O5′ or C3′? O3′ bond rupture takes place at the guanosine site in DNA single strands. On the other hand, the comparatively high energy barrier of the N‐glycosidic bond rupture implies that this reaction pathway is inferior to C? O bond cleavage. Qualitative agreement was found between the theoretical sequence of the bond breaking reaction pathways in the PCM model and the ratio for the corresponding bond breaks observed in the experiment of LEE‐induced damage in oligonucleotide tetramer CGTA. This concord suggests that the influence of the surroundings in the thin solid film on the LEE‐induced DNA damage resembles that of the solvent. 相似文献
2.
Frank Seela Ping Ding Xiaohua Peng Henning Eickmeier Hans Reuter 《Acta Crystallographica. Section C, Structural Chemistry》2007,63(10):o600-o602
The title compound, 2,4‐diamino‐5‐bromo‐7‐(2‐deoxy‐2‐fluoro‐β‐d ‐arabinofuranosyl)‐7H‐pyrrolo[2,3‐d]pyrimidine, C11H13BrFN5O3, shows two conformations of the exocyclic C4′—C5′ bond, with the torsion angle γ (O5′—C5′—C4′—C3′) being 170.1 (3)° for conformer 1 (occupancy 0.69) and 60.7 (7)° for conformer 2 (occupancy 0.31). The N‐glycosylic bond exhibits an anti conformation, with χ = −114.8 (4)°. The sugar pucker is N‐type (C3′‐endo; 3T4), with P = 23.3 (4)° and τm = 36.5 (2)°. The compound forms a three‐dimensional network that is stabilized by several intermolecular hydrogen bonds (N—H...O, O—H...N and N—H...Br). 相似文献
3.
Duraisamy Tamilselvi P. Thomas Muthiah 《Acta Crystallographica. Section C, Structural Chemistry》2011,67(5):o192-o194
In the title compound (systematic name: 6‐benzylamino‐7H‐purin‐3‐ium p‐toluenesulfonate), C12H12N5+·C7H7O3S−, the adenine moiety exists as the N3‐protonated N7—H tautomer. The dihedral angle between the adenine ring system and the phenyl ring is 82.76 (11)°. Two of the sulfonate O atoms form C—H...O and N—H...O hydrogen bonds with the H atoms on the N and C atoms in the 3‐ and 8‐positions, respectively, of the adenine moiety, leading to a zigzag chain. Two antiparallel zigzag chains are linked by the remaining sulfonate O atom through Hoogsteen‐site H atoms (i.e. those on the N atoms in the 6‐ and 7‐positions) of the adenine moiety, leading to a double chain. An annulus formed by a pair of inversion‐related anions and cations has been identified. An intramolecular toluenesulfonate–phenyl C—H...π interaction is also present. 相似文献
4.
Xiaohua Peng Frank Seela Henning Eickmeier Hans Reuter 《Acta Crystallographica. Section C, Structural Chemistry》2007,63(2):o96-o98
In the title compound [systematic name: 7‐(2‐deoxy‐β‐d ‐erythro‐pentofuranosyl)‐2‐fluoro‐7H‐pyrrolo[2,3‐d]pyrimidin‐2‐amine], C11H13FN4O3, the conformation of the N‐glycosylic bond is between anti and high‐anti [χ = −110.2 (3)°]. The 2′‐deoxyribofuranosyl unit adopts the N‐type sugar pucker (4T3), with P = 40.3° and τm = 39.2°. The orientation of the exocyclic C4′—C5′ bond is −ap (trans), with a torsion angle γ = −168.39 (18)°. The nucleobases are arranged head‐to‐head. The crystal structure is stabilized by four intermolecular hydrogen bonds of types N—H⋯N, N—H⋯O and O—H⋯O. 相似文献
5.
Wilhelm Maximilian Hützler Michael Bolte 《Acta Crystallographica. Section C, Structural Chemistry》2013,69(1):93-100
In order to study the preferred hydrogen‐bonding pattern of 6‐amino‐2‐thiouracil, C4H5N3OS, (I), crystallization experiments yielded five different pseudopolymorphs of (I), namely the dimethylformamide disolvate, C4H5N3OS·2C3H7NO, (Ia), the dimethylacetamide monosolvate, C4H5N3OS·C4H9NO, (Ib), the dimethylacetamide sesquisolvate, C4H5N3OS·1.5C4H9NO, (Ic), and two different 1‐methylpyrrolidin‐2‐one sesquisolvates, C4H5N3OS·1.5C5H9NO, (Id) and (Ie). All structures contain R21(6) N—H...O hydrogen‐bond motifs. In the latter four structures, additional R22(8) N—H...O hydrogen‐bond motifs are present stabilizing homodimers of (I). No type of hydrogen bond other than N—H...O is observed. According to a search of the Cambridge Structural Database, most 2‐thiouracil derivatives form homodimers stabilized by an R22(8) hydrogen‐bonding pattern, with (i) only N—H...O, (ii) only N—H...S or (iii) alternating pairs of N—H...O and N—H...S hydrogen bonds. 相似文献
6.
Simone Budow Khalil I. Shaikh Henning Eickmeier Frank Seela 《Acta Crystallographica. Section C, Structural Chemistry》2006,62(5):o246-o248
In the title compound, 2′‐deoxy‐7‐propynyl‐7‐deazaadenosine, C14H16N4O3, the torsion angle of the N‐glycosylic bond is anti [χ = −130.7 (2)°]. The sugar pucker of the 2′‐deoxyribofuranosyl moiety is C2′‐endo–C3′‐exo, 2T3 (S‐type), with P = 185.9 (2)° and τm = 39.1 (1)°, and the orientation of the exocyclic C4′—C5′ bond is −ap (trans). The 7‐substituted propynyl group is nearly coplanar with the heterocyclic base moiety. Molecules of the nucleoside form a layered network in which the heterocyclic bases are stacked head‐to‐tail with a closest distance of 3.197 (1) Å. The crystal structure of the nucleoside is stabilized by three intermolecular hydrogen bonds of types N—H⋯ O, O—H⋯ N and O—H⋯ O. 相似文献
7.
Antony Bulanov Igor N. Shcherbakov Leonid D. Popov E. Y. Shasheva P. A. Belikov Zoya A. Starikova 《Acta Crystallographica. Section C, Structural Chemistry》2011,67(3):o85-o88
The structures of new oxaindane spiropyrans derived from 7‐hydroxy‐3′,3′‐dimethyl‐3′H‐spiro[chromene‐2,1′‐isobenzofuran]‐8‐carbaldehyde (SP1), namely N‐benzyl‐2‐[(7‐hydroxy‐3′,3′‐dimethyl‐3′H‐spiro[chromene‐2,1′‐isobenzofuran]‐8‐yl)methylidene]hydrazinecarbothioamide, C27H25N3O3S, (I), at 120 (2) K, and N′‐[(7‐hydroxy‐3′,3′‐dimethyl‐3′H‐spiro[chromene‐2,1′‐isobenzofuran]‐8‐yl)methylidene]‐4‐methylbenzohydrazide acetone monosolvate, C27H24N2O4·C3H6O, (II), at 100 (2) K, are reported. The photochromically active Cspiro—O bond length in (I) is close to that in the parent compound (SP1), and in (II) it is shorter. In (I), centrosymmetric pairs of molecules are bound by two equivalent N—H...S hydrogen bonds, forming an eight‐membered ring with two donors and two acceptors. 相似文献
8.
Frank Seela Khalil Shaikh Henning Eickmeier 《Acta Crystallographica. Section C, Structural Chemistry》2004,60(7):o489-o491
The title compound, C14H16N4O4, adopts the anti conformation at the glycosylic bond [χ−117.1 (5)°]. The sugar pucker of the 2′‐deoxyribofuranosyl moiety is C2′‐endo–C3′‐exo, 2T3 (S‐type). The orientation of the exocyclic C4′—C5′ bond is +sc (gauche). The propynyl group is linear and coplanar with the nucleobase moiety. The structure of the compound is stabilized by several hydrogen bonds (N—H⋯O and O—H⋯O), leading to the formation of a multi‐layered network. The nucleobases, as well as the propynyl groups, are stacked. This stacking might cause the extraordinary stability of DNA duplexes containing this compound. 相似文献
9.
Wen‐Qing Lin Xin Ming Henning Eickmeier Frank Seela 《Acta Crystallographica. Section C, Structural Chemistry》2006,62(7):o379-o381
In the title compound [systematic name: 4‐amino‐7‐(β‐d ‐ribofuranosyl)‐7H‐pyrazolo[3,4‐d][1,2,3]triazine], C9H12N6O4, the torsion angle of the N‐glycosylic bond is high anti [χ = −83.2 (3)°]. The ribofuranose moiety adopts the C2′‐endo–C1′‐exo (2T1) sugar conformation (S‐type sugar pucker), with P = 152.4° and τm = 35.0°. The conformation at the C4′—C5′ bond is +sc (gauche,gauche), with the torsion angle γ = 52.0 (3)°. The compound forms a three‐dimensional network that is stabilized by several hydrogen bonds (N—H⋯O, O—H⋯N and O—H⋯O). 相似文献
10.
Md. Akhtaruzzaman Masaaki Tomura Yoshiro Yamashita 《Acta Crystallographica. Section C, Structural Chemistry》2001,57(6):751-753
The title compound, C20H10N4S, and its dipyridinium salt, 4,4′‐(2,1,3‐benzodiazol‐4,7‐diyldiethynyl)dipyridinium diperchlorate, C20H12N4S2+·2ClO4?, display bond alternation in the 2,1,3‐benzothiadiazole rings, which suggests their quinonoid character. The dipyridinium dication molecules stack along the a axis and form a dimer with short S?N interheteroatom contacts [3.146 (4) Å] between the two 1,2,5‐thiadiazole rings. The dimer is surrounded by the perchlorate anions with which it forms a large number of intermolecular N—H?O and C—H?O hydrogen bonds. 相似文献
11.
Jing Zhang Xueliang Hou Weifeng Bu Lixin Wu Ling Ye Guangdi Yang Yuguo Fan 《Acta Crystallographica. Section C, Structural Chemistry》2002,58(11):o663-o664
The title compound (systematic name: 4,4′‐ethylenedipyridinium dimaleate), C12H12N22+·2C4H3O4?, is a 1:2 adduct of 1,2‐bis(4‐pyridyl)ethylene (BPE) and maleic acid (MA). The interaction between the two components in the molecular complex is due to intermolecular hydrogen bonding via an N+—H?O? hydrogen bond. 相似文献
12.
Nithianantham Stanley Packianathan Thomas Muthiah Steven J. Geib 《Acta Crystallographica. Section C, Structural Chemistry》2003,59(1):o27-o29
In the title compound, N6‐furfuryladenin‐3‐ium chloride, C10H10N5O+·Cl−, the adenine moiety exists as the N3‐protonated N7–H tautomer. The orientation of the N6 substituent (furfuryl moiety) is distal to the imidazole ring of the adenine base. The dihedral angle between the adenine plane and the furfuryl ring plane is 76.1 (2)°. Three N—H⋯Cl hydrogen bonds are responsible for the formation of a supramolecular chain‐like pattern. These supramolecular chains are interconnected by C—H⋯Cl hydrogen bonds to form a hydrogen‐bonded sheet and a three‐dimensional hydrogen‐bonded network. 相似文献
13.
Ammasai Karthikeyan Robert Swinton Darious Packianathan Thomas Muthiah Franc Perdih 《Acta Crystallographica. Section C, Structural Chemistry》2015,71(11):985-990
Two novel cocrystals of the N(7)—H tautomeric form of N6‐benzoyladenine (BA), namely N6‐benzoyladenine–3‐hydroxypyridinium‐2‐carboxylate (3HPA) (1/1), C12H9N5O·C6H5NO3, (I), and N6‐benzoyladenine–DL‐tartaric acid (TA) (1/1), C12H9N5O·C4H6O6, (II), are reported. In both cocrystals, the N6‐benzoyladenine molecule exists as the N(7)—H tautomer, and this tautomeric form is stabilized by intramolecular N—H...O hydrogen bonding between the benzoyl C=O group and the N(7)—H hydrogen on the Hoogsteen site of the purine ring, forming an S(7) motif. The dihedral angle between the adenine and phenyl planes is 0.94 (8)° in (I) and 9.77 (8)° in (II). In (I), the Watson–Crick face of BA (N6—H and N1; purine numbering) interacts with the carboxylate and phenol groups of 3HPA through N—H...O and O—H...N hydrogen bonds, generating a ring‐motif heterosynthon [graph set R22(6)]. However, in (II), the Hoogsteen face of BA (benzoyl O atom and N7; purine numbering) interacts with TA (hydroxy and carbonyl O atoms) through N—H...O and O—H...O hydrogen bonds, generating a different heterosynthon [graph set R22(4)]. Both crystal structures are further stabilized by π–π stacking interactions. 相似文献
14.
K. V. P. Pavan Kumar K. C. Kumara Swamy 《Acta Crystallographica. Section C, Structural Chemistry》2005,61(11):o668-o670
The molecular structures of the complexes imidazolium 6,6′‐di‐tert‐butyl‐4,4′‐dimethyl‐2,2′‐thiodiphenyl phosphate, C3H5N2+·C22H28O4PS−, (I), and imidazolium 6,6′‐di‐tert‐butyl‐4,4′‐dimethyl‐2,2′‐thiodiphenyl phosphate diisopropyl hydrazodicarboxylate hemisolvate, C3H5N2+·C22H28O4PS−·0.5C8H16N2O4, (II), have been determined. While (I) forms the expected hydrogen‐bonded chain utilizing the two imidazole N‐bound H atoms, in (II), the substituted hydrazine solvent molecule inserts itself between the chains. Compound (I) exhibits a strong N—H⋯O hydrogen bond, with an N⋯O distance of 2.603 (2) Å. The hydrazine solvent molecule in (II) lies about a twofold axis and the N‐bound H atoms are involved in bifurcated hydrogen bonds with phosphate O atoms. A C‐bound H atom of the imidazolium cation is involved in a C—H⋯O interaction with a carbonyl O atom of the hydrazine solvent molecule. 相似文献
15.
Dawei Jiang Yang He Simone Budow Zygmunt Kazimierczuk Henning Eickmeier Hans Reuter Frank Seela 《Acta Crystallographica. Section C, Structural Chemistry》2010,66(11):o561-o564
The title compound, C9H12N6O3, shows a syn‐glycosylic bond orientation [χ = 64.17 (16)°]. The 2′‐deoxyfuranosyl moiety exhibits an unusual C1′‐exo–O4′‐endo (1T0; S‐type) sugar pucker, with P = 111.5 (1)° and τm = 40.3 (1)°. The conformation at the exocyclic C4′—C5′ bond is +sc (gauche), with γ = 64.4 (1)°. The two‐dimensional hydrogen‐bonded network is built from intermolecular N—H...O and O—H...N hydrogen bonds. An intramolecular bifurcated hydrogen bond, with an amino N—H group as hydrogen‐bond donor and the ring and hydroxymethyl O atoms of the sugar moiety as acceptors, constrains the overall conformation of the nucleoside. 相似文献
16.
Dianne D. Ellis Anthony L. Spek Pieter Imhoff Cornelis J. Elsevier 《Acta Crystallographica. Section C, Structural Chemistry》2000,56(7):836-837
The cationic part of the homodifunctional aminophosphoranyl ligand, C41H41N2P2+·I?, shows interesting features associated with the N—P—C—P—N skeleton. The P—C(H) bond distances [1.696 (3) and 1.697 (3) Å] possess partial double‐bond characteristics. The nature of the P—C(H) and P—N bonds suggests that the positive charge is only distributed around the P—C—P atoms. The structure has near twofold symmetry through the central methylide‐C atom. 相似文献
17.
BYABARTTA Prithwiraj 《中国化学》2008,26(8):1515-1518
Reaction of [Au(DAPTA)(Cl)] with RaaiR’ in CH2Cl2 medium following ligand addition leads to [Au(DAPTA)(RaaiR’)](Cl) [DAPTA=diacetyl-1,3,5-triaza-7-phosphaadamantane, RaaiR’=p-R-C6H4-N=N- C3H2-NN-1-R’, (1—3), abbreviated as N,N’-chelator, where N(imidazole) and N(azo) represent N and N’, respectively; R=H (a), Me (b), Cl (c) and R’=Me (1), CH2CH3 (2), CH2Ph (3)]. The 1H NMR spectral measurements in D2O suggest methylene, CH2, in RaaiEt gives a complex AB type multiplet while in RaaiCH2Ph it shows AB type quartets. 13C NMR spectrum in D2O suggest the molecular skeleton. The 1H-1H COSY spectrum in D2O as well as contour peaks in the 1H-13C HMQC spectrum in D2O assign the solution structure. 相似文献
18.
《Acta Crystallographica. Section C, Structural Chemistry》2017,73(12):1109-1115
Two spiro[indoline‐3,3′‐pyrrolizine] derivatives have been synthesized in good yield with high regio‐ and stereospecificity using one‐pot reactions between readily available starting materials, namely l ‐proline, substituted 1H‐indole‐2,3‐diones and electron‐deficient alkenes. The products have been fully characterized by elemental analysis, IR and NMR spectroscopy, mass spectrometry and crystal structure analysis. In (1′RS ,2′RS ,3SR ,7a′SR )‐2′‐benzoyl‐1‐hexyl‐2‐oxo‐1′,2′,5′,6′,7′,7a′‐hexahydrospiro[indoline‐3,3′‐pyrrolizine]‐1′‐carboxylic acid, C28H32N2O4, (I), the unsubstituted pyrrole ring and the reduced spiro‐fused pyrrole ring adopt half‐chair and envelope conformations, respectively, while in (1′RS ,2′RS ,3SR ,7a′SR )‐1′,2′‐bis(4‐chlorobenzoyl)‐5,7‐dichloro‐2‐oxo‐1′,2′,5′,6′,7′,7a′‐hexahydrospiro[indoline‐3,3′‐pyrrolizine], which crystallizes as a partial dichloromethane solvate, C28H20Cl4N2O3·0.981CH2Cl2, (II), where the solvent component is disordered over three sets of atomic sites, these two rings adopt envelope and half‐chair conformations, respectively. Molecules of (I) are linked by an O—H…·O hydrogen bond to form cyclic R 66(48) hexamers of (S 6) symmetry, which are further linked by two C—H…O hydrogen bonds to form a three‐dimensional framework structure. In compound (II), inversion‐related pairs of N—H…O hydrogen bonds link the spiro[indoline‐3,3′‐pyrrolizine] molecules into simple R 22(8) dimers. 相似文献
19.
Maya Tutughamiarso Ernst Egert 《Acta Crystallographica. Section C, Structural Chemistry》2011,67(11):o439-o445
In order to investigate the relative stability of N—H...O and N—H...S hydrogen bonds, we cocrystallized the antithyroid drug 6‐propyl‐2‐thiouracil with two complementary heterocycles. In the cocrystal pyrimidin‐2‐amine–6‐propyl‐2‐thiouracil (1/2), C4H5N3·2C7H10N2OS, (I), the `base pair' is connected by one N—H...S and one N—H...N hydrogen bond. Homodimers of 6‐propyl‐2‐thiouracil linked by two N—H...S hydrogen bonds are observed in the cocrystal N‐(6‐acetamidopyridin‐2‐yl)acetamide–6‐propyl‐2‐thiouracil (1/2), C9H11N3O2·2C7H10N2OS, (II). The crystal structure of 6‐propyl‐2‐thiouracil itself, C7H10N2OS, (III), is stabilized by pairwise N—H...O and N—H...S hydrogen bonds. In all three structures, N—H...S hydrogen bonds occur only within R22(8) patterns, whereas N—H...O hydrogen bonds tend to connect the homo‐ and heterodimers into extended networks. In agreement with related structures, the hydrogen‐bonding capability of C=O and C=S groups seems to be comparable. 相似文献
20.
Linheng Wei Ziliang Wang Xianggao Meng 《Acta Crystallographica. Section C, Structural Chemistry》2009,65(9):o453-o456
Cocrystallization of imidazole or 4‐methylimidazole with 2,2′‐dithiodibenzoic acid from methanol solution yields the title 2:1 and 1:1 organic salts, 2C3H5N2+·C14H10O4S22−, (I), and C4H7N2+·C14H10O4S2−, (II), respectively. Compound (I) crystallizes in the monoclinic C2/c space group with the mid‐point of the S—S bond lying on a twofold axis. The component ions in (I) are linked by intermolecular N—H...O hydrogen bonds to form a two‐dimensional network, which is further linked by C—H...O hydrogen bonds into a three‐dimensional network. In contrast, by means of N—H...O, N—H...S and O—H...O hydrogen bonds, the component ions in (II) are linked into a tape and adjacent tapes are further linked by π–π, C—H...O and C—H...π interactions, resulting in a three‐dimensional network. 相似文献