Iso-guanine quintet complexes coordinated by mono valent cations (Na+, K+, Rb+, and Cs+)

The geometric structures, the interaction energies, the vibrational characteristics, and the electronic structures of the complexes of the isoguanine (isoG) quintet coordinated with mono valent cations (Na(+), K(+), Rb(+), and Cs(+)) have been studied based on the nonplanar models. The geometry of the local minimum structure of the Na(+)-isoG quintet complex deviates significantly from the planar structure. The geometric characteristics of the Na(+)-isoG quintet complex support the experimental findings that Na(+) is unlikely to induce the formation of the isoG quintet-based pentaplexes. Similar to the guanine tetraplexes, the ionic selectivity of the isoG quintet-based pentaplexes is largely dominated by the hydration energy of the cations. After hydration correction, the positive value of the free energy difference for the formation of the Na(+)-isoG quintet complex (DeltaG(f)) suggests that the isoG quintet is unable to capture the hydrated Na(+). The negative values of DeltaG(f) for the K(+) and Rb(+) complexes implies that both ions have the tendency to be inserted into the isoG pentaplexes. This study suggests that, to elucidate the high Cs(+) selectivity of isoG pentaplexes, it is necessary to extend the model from the isoG quintet to the isoG decamer.     

Competition between pi and non-pi cation-binding sites in aromatic amino acids: a theoretical study of alkali metal cation (Li+, Na+, K+)-phenylalanine complexes

To understand the cation-pi interaction in aromatic amino acids and peptides, the binding of M(+) (where M(+) = Li(+), Na(+), and K(+)) to phenylalanine (Phe) is studied at the best level of density functional theory reported so far. The different modes of M(+) binding show the same order of binding affinity (Li(+)>Na(+)>K(+)), in the approximate ratio of 2.2:1.5:1.0. The most stable binding mode is one in which the M(+) is stabilized by a tridentate interaction between the cation and the carbonyl oxygen (O[double bond]C), amino nitrogen (--NH(2)), and aromatic pi ring; the absolute Li(+), Na(+), and K(+) affinities are estimated theoretically to be 275, 201, and 141 kJ mol(-1), respectively. Factors affecting the relative stabilities of various M(+)-Phe binding modes and conformers have been identified, with ion-dipole interaction playing an important role. We found that the trend of pi and non-pi cation bonding distances (Na(+)-pi>Na(+)-N>Na(+)-O and K(+)-pi>K(+)-N>K(+)-O) in our theoretical Na(+)/K(+)-Phe structures are in agreement with the reported X-ray crystal structures of model synthetic receptors (sodium and potassium bound lariat ether complexes), even though the average alkali metal cation-pi distance found in the crystal structures is longer. This difference between the solid and the gas-phase structures can be reconciled by taking the higher coordination number of the cations in the lariat ether complexes into account.     

Density functional study of ion hydration for the alkali metal ions (Li+, Na+, K+) and the halide ions (F-, Br-, Cl-)

We performed first principles density functional calculations to study the effect of monovalent ions M+ (M = Li,Na,K) and A- (A = F,Cl,Br) in water with the aim of characterizing the local molecular properties of hydration. For this reason, several ion-water clusters, up to five or six water molecules were considered; such structures were optimized, and the Wannier analysis was then applied to determine the average molecular dipole moment of water. We found that with an increasing number of water molecules, the molecular polarization is determined by the water-water interaction rather than the water-ion interaction, as one would intuitively expect. These results are consistent with those obtained in previous density functional calculations and with other results obtained by employing classical polarizable water models. The main message of this work is that as one increases the number of molecules the average dipole moment of all water molecules and the ones in the first shell tends to the same value as the average of a similar sized cluster of pure water. This supports the use of nonpolarizable classical models of water in classical atomistic simulations.     

DFT study of the cryptand and benzocryptand and their complexes with alkali metal cations: Li+, Na+, K+

In the present work, a theoretical study of the cryptand 4, 7, 13, 16, 21, 24-hexaoxa-1, 10- diazabicyclo [8,8,8] hexacosan (the named [222]) and the cryptand 5, 6-benzo-4, 7, 13, 16, 21, 24-hexaoxa-1, 10-diazabicyclo [8, 8, 8] hexacosan (the nemed [222B]) had been done using density functional theory (DFT) with B3LYP/6-31G* method in order to obtain the electronic and geometrical structure of the cryptands and their complexes with alkali metal ions: Li(+), Na(+), and K(+). The nucleophilicity of cryptands had been investigated by the Fukui function. For complexes, the match between cation and cavity size, the status of interaction between alkali metal ions and donor atoms in the cryptands and the rigidity of the cryptands had been analyzed through the other calculated parameters. In addition, the enthalpies of complexation reaction and cation exchange reaction had been studied by the calculated thermodynamic data. The calculated results are in a good agreement with the experimental data for the complexes.     

Napthaquinone derived ionophores: interaction with biologically important metal ions (Li+, Na+, K+, Mg2+ and Ca2+)

The synthetic model systems based on the study of supramolecular compounds are proficient in mimicking the biological processes so as to get the insight of their processes. In this perspective, a series of naphthaquinone derived redox switchable ionophores namely D₁ (2,3,5,6,8,9,11,12-octahydronaphtho [2,3b] [1,4,7,10,13] pentaoxacyclo octadecine-14,19-dione) and D₂ (2,3,5,6,8,9-hexahydronaphtho[2,3-b] [1,4,7,10] tetraoxacyclododecine-11,16-dione) have been synthesized and interacted with Li⁺, Na⁺, K⁺, Ca²⁺, Mg²⁺ cations. The isolated solid state soft materials obtained after interaction were characterized by melting point, TLC, ¹H NMR spectroscopy and CHN estimation. The extraction, transport potential and stability constant determination of these ionophores towards cations helped in investigating their binding strength in solution. The selective extraction of Na⁺ and Li⁺ by D₁ and D₂ correspondingly proves them an efficient compound for the manufacturing of chemosensor. Whereas efficient transport of Mg²⁺ by both the ionophores especially by D₁ may assist in developing biomodels for understanding its transport through membrane in living system. The selectivity of these ionophores towards metal ions can be modulated by molecular tailoring.     

Competitive binding exchange between alkali metal ions (K+, Rb+, and Cs+) and Na+ ions bound to the dimeric quadruplex [d(G4T4G4)]2: a 23Na and 1H NMR study

A comparative study of the competitive cation exchange between the alkali metal ions K⁺, Rb⁺, and Cs⁺ and the Na⁺ ions bound to the dimeric quadruplex [d(G₄T₄G₄)]₂ was performed in aqueous solution by a combined use of the ²³Na and ¹H NMR spectroscopy. The titration data confirm the different binding affinities of these ions for the G‐quadruplex and, in particular, major differences in the behavior of Cs⁺ as compared to the other ions were found. Accordingly, Cs⁺ competes with Na⁺ only for the binding sites at the quadruplex surface (primarily phosphate groups), while K⁺ and Rb⁺ are also able to replace sodium ions located inside the quadruplex. Furthermore, the ¹H NMR results relative to the CsCl titration evidence a close approach of Cs⁺ ions to the phosphate groups in the narrow groove of [d(G₄T₄G₄)]₂. Based on a three‐site exchange model, the ²³Na NMR relaxation data lead to an estimate of the relative binding affinity of Cs⁺ versus Na⁺ for the quadruplex surface of 0.5 at 298 K. Comparing this value to those reported in the literature for the surface of the G‐quadruplex formed by 5′‐guanosinemonophosphate and for the surface of double‐helical DNA suggests that topology factors may have an important influence on the cation affinity for the phosphate groups on DNA. Copyright © 2009 John Wiley & Sons, Ltd.     

Vibrational analysis of complexes of urate with IA group metal cations (Li+, Na+ and K+)

Vibrational frequency analysis was performed for the complexes of alkali metal cations (Li+, Na+ and K+) with urate in the gas phase. The geometries of all possible metal cation-urate complexes were optimized at the B3LYP/6-311++G(d,p) level. The most stable complex corresponding to the each cation was used for the vibrational frequency analysis including the computation of % potential energy distribution (%PED). For comparison, the vibrational frequency analysis was also performed for the uric acid. The computed results are discussed in terms of the available experimental data. It was revealed that the characteristic stretching vibrational modes corresponding to the metal cation and the interacting nucleophilic sites of urate can be used to identify metals involved in the stone formation in the living system. Changes in different vibrational frequencies of uric acid consequent to the metal cation interactions are discussed.     

Polarographic study of Tl+, Li+, Na+, K+, and Cs+ complexes with monensin anion in dipolar aprotic solvents

Summary The stability constants,K _sof monensin complexes with Li⁺, Na⁺, K⁺ and Cs⁺ ions were studied by a competitive polarographic method using the Tl⁺/Tl(Hg) redox couple as a sensitive electrochemical probe. TheK _svalues are strongly influenced by the solvents (acetonitrile, propionitrile, acetone, N,N-dimethylformamide, N-methyl pyrolidinone, N,N-dimethylacetamide, dimethylsulfoxide, N,N-diethylformamide and N,N-diethylacetamide were used in experiments) and vary inversely with the Gutmann donicity scale. Molecular mechanics computations revealed the probable structures of the complexes.

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Polarographische Untersuchung von Tl⁺-, Li⁺-, Na⁺- und Cs⁺-Komplexen mit Monesin-Anion in dipolaren aprotischen Lösungsmitteln

Zusammenfassung Es wurden die StabilitätskonstantenK _svon Monesin-Komplexen mit Li⁺-, Ma⁺- und Cs⁺-Ionen mittels einer competitiven polarographischen Methode unter Verwendung der Tl⁺/Tl(Hg)-Redoxelektrode als sensitiver elektrochemischer Sonde bestimmt. DieK _s-Werte werden stark vom Lösungsmittel (Acetonitril, Propionitril, Aceton, N,N-Dimethylformamid, N-Methylpyrrolidinon, N,N-Dimethylacetamid, Dimethylsulfoxid, N,N-Diethylformamid und N,N-Diethylacetamid) beeinflußt, wobei sie invers zurGutmann schen Donizitätsskala variieren. Die wahrscheinliche Struktur der Komplexe wurde mittels molekularmechanischer Berechnungen ermittelt.

     

Metal‐stabilized rare tautomers: N4 metalated cytosine (M = Li+, Na+, K+, Rb+ and Cs+), theoretical views

Ab initio calculations indicate that metalation of the exocyclic amino group of cytosine by the elements of Group IA (Li, Na, K, Rb and Cs) induces protonation of a nucleobase ring nitrogen atom, and hence causes a proton shift from an exocyclic to an endocyclic nitrogen atom. Thus, this metal‐assisted process leads to the generation of rare nucleobase tautomers. The calculations suggest that this kind of metalation increases the protonation energies of the aromatic ring of the nucleobase. The present study reports the quantum chemistry analysis of the metal‐assisted tautomerization. The calculations clearly demonstrate that metalation of the exocyclic amino group of the nucleobase significantly increases the protonation energy of the aromatic rings of the nucleobase. Also, absolute anisotropy shift, molecular orbital and natural bond orbital calculations are compatible with these results. Copyright © 2003 John Wiley & Sons, Ltd.     

Study of metal ions (Na+, K+) interaction with different conformations of glycine molecule

Interaction of metal ions (Na⁺, K⁺) with different binding sites, such as amino nitrogen, hydroxyl oxygen, and carbonyl oxygen for all gaseous conformers of glycine molecule were investigated using Density Functional Theory (B3LYP/6‐311++G**, B3PW91/6‐311++G**) methods. It was found that the order of stability of the conformers was changed due to the binding of the metal ion. The relative energy values show that the 7p conformer is more stable than the 1p conformer when a metal ion binds with the carbonyl oxygen. The intensity of interaction on hydroxyl oxygen is very low due to the low basicity of hydroxyl oxygen. The binding affinities of the complexes were calculated using the thermochemical properties. The relative energy and chemical hardness values predicted the most stable complex. The calculated condensed Fukui functions predict the favorable reactive site among the three binding sites. It is concluded that the reactivity of each binding site varies for each conformation due to the presence of intramolecular hydrogen bonding. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Effect of monovalent cations (Li+, Na+, K+, Cs+) on self-assembly of thiol-modified double-stranded and single-stranded DNA on gold electrode

In this article we investigate the effect of monovalent cations (Li(+), Na(+), K(+), Cs(+)) on self-assembly of thiol-modified double-stranded DNA (ds-DNA) and single-stranded DNA (ss-DNA) on gold electrodes. Electrochemical characteristics (surface coverage, ion penetration and charge transfer) of ds-DNA and ss-DNA self-assembled monolayers (SAMs) formed with different monovalent cations are inspected based on six important interfacial parameters including surface coverage (Γ(m)), interfacial capacitance (C), phase angle (Φ(1 Hz)), ion transfer resistance (R(it)*), current density difference (Δj) and charge transfer resistance (R(ct)) from chronocoulometry (CC), cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). Three sections are included: (1) Investigation of the relationships of parameters (Γ(m), C, Φ(1 Hz), R(it)*, Δj and R(ct)) for ds-DNA-SAMs and ss-DNA-SAMs with cation types and concentrations; (2) confirmation and explanation of our experimental results combined with our recently proposed simple DNA model and literature reports; (3) exploration of the mechanism for the orders of monovalent cations (Li(+), Na(+), K(+), Cs(+)) on availing the adsorption of ds-DNA and ss-DNA molecules on gold based on their physicochemical parameters (ion size, solvation free energy and enthalpy, ion-water bond length and water exchange rate) and possible binding modes with DNA molecules. This work might provide a useful reference for understanding interactional mechanism of cations with DNA molecules.     

Comparative Study of Alkali-Cation-Based (Li+, Na+, K+) Electrolytes in Acetonitrile and Alkylcarbonates

The development of a suitable functional electrolyte is urgently required for fast-charging and high-voltage alkali-ion (Li, Na, K) batteries as well as next-generation hybrids supercapacitors. Many recent works focused on an optimal selection of electrolytes for alkali-ion based systems and their electrochemical performance but the understanding of the fundamental aspect that explains their different behaviour is rare. Herein, we report a comparative study of transport properties for LiPF₆, NaPF₆, KPF₆ in acetonitrile (AN) and a binary mixture of ethylene carbonate (EC), dimethyl carbonate (DMC): (EC/DMC : 1/1, weigh) through conductivities, densities and viscosities measurements in wide temperature domain. By application of the Stokes-Einstein, Nernst-Einstein, and Jones Dole equations, the effective ionic solvated radius of cation (r_eff), the ionic dissociation coefficient (α_D) and structuring Jones Dole's parameters (A, B) for salt are calculated and discussed according to solvent or cation nature as a function of temperature. From the results, we demonstrate that better mobility of potassium can be explained by the nature of the ion-ion and ion-solvent interactions due to its polarizability. In the same time, the predominance of triple ions in the case of K⁺, is a disadvantage at high concentration.     

The effect of cation size (H+, Li+, Na+, and K+) on McLafferty-type rearrangement of even-electron ions in mass spectrometry

Protonation and alkali-metal cation adduction are the most important ionization processes in soft-ionization mass spectrometry.Studies on the fragmentation mechanism of protonated and alkali-metal-cationized compounds in tandem mass spectrometry are essential and helpful for structural analysis.In some cases,it was often observed that a compound attached by different alkali-metal cations(or proton)exhibits similar fragmentation patterns but the relative abundances of product ions are different.This difference was considered to derive from the different electrostatic interactions of alkali-metal cations(or the bonded effect of proton)with the analyte.The alkali-metal cation with a smaller ionic radius shows stronger electrostatic interaction with the molecule because of its higher charge density.In addition,the bonded effect of the proton is stronger than the electrostatic interaction of the alkali-metal cation.In the present study,which used McLafferty-type rearrangements of even-electron ions([M+Cat]+,Cat=H,Li,Na,K)as model reactions,the effect of cation size in mass spectrometric fragmentation reactions is highlighted.These considerations were also successfully applied to interpret the similar but distinct fragmentation behavior of proton and alkali-metal cation adducts of a synthetic compound(2-(acetamido(phenyl)methyl)-3-oxobutanoate)and a drug(entecavir).     

Computational study of the interaction of metal ions (Na+, K+, Mg2+, Ca2+, and Al3+) with Quercetin and its antioxidant properties

In recent years, the chelation between quercetin and transition metals has attracted much attention because the complexes formed have higher antioxidant and medicinal activities. However, the theoretical investigation of the mechanisms of flavonoid functioning along with the structures of quercetin–metal complexes is still not sufficiently studied. In this research work, quercetin–complexes with Na⁺, K⁺, Mg²⁺, Ca²⁺, and Al³⁺ are studied theoretically by using density functional theory (DFT) method in order to investigate the stability, reactivity, nature of interaction, and the application of the quercetin-metal complexes as potential antioxidants. From the Highest Occupied Molecular Orbital (HOMO) and Lowest Unoccupied Molecular Orbital (LUMO) results, the K-quercetin salt was observed to be more stable as compared to the other metals while Ca seemed to be the most reactive with the least values in the neutral form of the metal - quercetin interaction. The results of the antioxidant activity in the neutral state present Ca and Mg to have the higher values of ionization potential (IP) indicating that the antioxidant activity of Ca/Mg complexes with quercetin are less pronounced, while K-complex with the least value indicating the higher the electron donating reactivity. In comparison, it is worth to note that Mg-Q and Ca-Q in the deprotonated state of quercetin showcase lower IP, higher ability of H-atom transfer and electron transfer reactivity, therefore, better antioxidant candidates of the quercetin complexes than their other counterparts.     

Effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) and water coordination on the structure of glycine and zwitterionic glycine

Interactions between metal ions and amino acids are common both in solution and in the gas phase. Here, the effect of metal ions and water on the structure of glycine is examined. The effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) and water on structures of Gly.Mn+(H2O)m and GlyZwitt.Mn+(H2O)m (m = 0, 2, 5) complexes have been determined theoretically by employing the hybrid B3LYP exchange-correlation functional and using extended basis sets. Selected calculations were carried out also by means of CBS-QB3 model chemistry. The interaction enthalpies, entropies, and Gibbs energies of eight complexes Gly.Mn+ (Mn+ = Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) were determined at the B3LYP density functional level of theory. The computed Gibbs energies DeltaG degrees are negative and span a rather broad energy interval (from -90 to -1100 kJ mol(-1)), meaning that the ions studied form strong complexes. The largest interaction Gibbs energy (-1076 kJ mol(-1)) was computed for the NiGly2+ complex. Calculations of the molecular structure and relative stability of the Gly.Mn+(H2O)m and GlyZwitt.Mn+(H2O)m (Mn+ = Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+; m = 0, 2, and 5) systems indicate that in the complexes with monovalent metal cations the most stable species are the NO coordinated metal cations in non-zwitterionic glycine. Divalent cations Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+ prefer coordination via the OO bifurcated bonds of the zwitterionic glycine. Stepwise addition of two and five water molecules leads to considerable changes in the relative stability of the hydrated species. Addition of two water molecules at the metal ion in both Gly.Mn+ and GlyZwitt.Mn+ complexes reduces the relative stability of metallic complexes of glycine. For Mn+ = Li+ or Na+, the addition of five water molecules does not change the relative order of stability. In the Gly.K+ complex, the solvation shell of water molecules around K+ ion has, because of the larger size of the potassium cation, a different structure with a reduced number of hydrogen-bonded contacts. This results in a net preference (by 10.3 kJ mol(-1)) of the GlyZwitt.K+H2O5 system. Addition of five water molecules to the glycine complexes containing divalent cations Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+ results in a net preference for non-zwitterionic glycine species. The computed relative Gibbs energies are quite high (-10 to -38 kJ mol(-1)), and the NO coordination is preferred in the Gly.Mn+(H2O)5 (Mn+ = Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) complexes over the OO coordination.     

Structures and energetics of the cation-pi interactions of Li+, Na+, and K+ with cup-shaped molecules: effect of ring addition to benzene and cavity selectivity

The interactions of alkali metal cations (Li (+), Na (+), and K (+)) with the cup-shaped molecules, tris(bicyclo[2.2.1]hepteno)benzene and tris(7-azabicyclo[2.2.1]hepteno)benzene have been investigated using MP2(FULL)/6-311+G(d,p)//MP2/6-31G(d) level of theory. The geometries and interaction energies obtained for the metal ion complexation with the cup-shaped systems trindene and benzotripyrrole are compared with the results for benzene-metal ion complexes to examine the effect of ring addition to the benzene on structural and binding affinities. The cup-shaped molecules exhibit two faces or cavities (top and bottom). Except for one of the conformers of tris(7-azabicyclo[2.2.1]hepteno)benzene), the metal ions prefer to bind with the top face over bottom face of the cup-shaped molecules. The selectivity of the top face is due to strong interaction of the cation with the pi cloud not only from the central six-membered ring but also from the pi electrons of rim C=C bonds. In contrast, the metal ions under study exhibit preference to bind with the bottom face rather than top face of tris(7-azabicyclo[2.2.1]hepteno)benzene) when the lone pair of electrons of three nitrogen atoms participates in binding with metal ions. This bottom face selectivity could be ascribed to the combined effect of the cation-pi and strong cation-lone pair interactions. As evidenced from the values of pyramidalization angles, the host molecule becomes deeper bowl when the lone pair of electrons of nitrogen atoms participates in binding with cation. Molecular electrostatic potential surfaces nicely explain the cavity selectivity in the cup-shaped systems and the variation of interaction energies for different ligands. Vibrational frequency analysis is useful in characterizing different metal ion complexes and to distinguish top and bottom face complexes of metal ions with the cup-shaped molecules.     

Theoretical study on the interaction of glutathione with group IA (Li+, Na+, K+), IIA (Be2+, Mg2+, Ca2+), and IIIA (Al3+) metal cations

The structures and energies of complexes obtained upon interaction between glutathione (GSH) and alkali (Li⁺, Na⁺, K⁺), or alkaline earth metal (Be²⁺, Mg²⁺, Ca²⁺), or group IIIA (Al³⁺) cations were studied using quantum chemical density functional theory. The characteristics of the interactions between GSH and the metal cations at different nucleophilic sites of GSH were examined selecting systematically, both mono- and multi-coordinating were taken into account. The results indicated that the heteroatom of GSH, the radius and charge of metal ion, and the coordination number of the metal cation with the ligand played important roles in determining the stability of these complexes. Moreover, the intramolecular hydrogen migration in GSH could be promoted by the metal cations during coordination reaction. Furthermore, the Al³⁺ cation might catalyze the decarboxylation reaction and stimulate the formation of covalent bond between S atom and adjacent O atom of GSH.