Using perdeuterated surfactant micelles to resolve mixture components in diffusion‐ordered NMR spectroscopy

Diffusion‐ordered NMR spectroscopy resolves mixture components on the basis of differences in their respective diffusion coefficients or molecular sizes. However, when components have near‐identical diffusion coefficients, they are not resolved in the diffusion dimension of a diffusion‐ordered spectroscopy (DOSY) spectrum. Adding surfactant micelles to these mixtures has been shown to enhance resolution when the component molecules interact differentially with the micelles. This approach is similar to that used in electrokinetic chromatography (EKC) where modifiers like micelles or polymers are used to enhance the separation of mixture components. In this study, perdeuterated surfactants are added to analyte mixtures studied with the DOSY technique. Since no micelle resonances appear in the mixture spectra, the difficulty associated with performing biexponential analyses in spectral regions where analyte and surfactant resonances overlap is avoided. The approach is demonstrated using mixtures of peptides with near‐identical diffusion coefficients. Copyright © 2008 John Wiley & Sons, Ltd.     

NMR measurements of diffusion in concentrated samples: avoiding problems with radiation damping

Pulsed field gradient spin echo NMR is generally the method of choice for diffusion measurements on liquid samples. With modern high field instruments, however, severe problems can arise when it is applied to samples with very high proton concentrations because of the presence of radiation damping. The problems may be greatly reduced by a suitable choice of experimental parameters, in particular the use of modified stimulated echo pulse sequences with a reduced flip angle for the first pulse.     

J‐compensated PGSE: an improved NMR diffusion experiment with fewer phase distortions

Peak distortion caused by homonuclear ¹H J‐coupling is a major problem in many spin‐echo‐based experiments such as pulsed gradient spin‐echo (PGSE) experiments. Although peak phase distortions can be lessened by the incorporation of anti‐phase purging sequences, the sensitivity is substantially decreased. Techniques for lessening the effect of homonuclear J‐coupling evolution in spin‐echo‐based experiments have been investigated. Two potentially useful candidates include a J‐compensated inversion sequence that is efficient over a wide range of J‐coupling values and a pulse sequence that refocuses homonuclear J‐evolution during the spin‐echo. The latter was found to work superbly on samples containing two spin (AX or AB) systems and still provided significant advantage over the standard method on samples containing more complicated spin systems. Implementation of this J‐refocusing technique into a PGSE‐type experiment (J‐PGSE) leads to dramatic improvement of spectra and easier data analysis. The J‐PGSE sequence should find applications in many diffusion studies where the PGSE‐type method is required and should be a viable alternative to PGSTE especially in dilute samples due to its enhanced sensitivity. Copyright © 2009 John Wiley & Sons, Ltd.     

Structure elucidation of the intermediate in triethylborane-mediated radical addition of oxime ethers with 2D- and 3D-DOSY NMR

The structures of the components in the triethylborane-mediated radical addition reaction of oxime ether were investigated by 1H- and 3D-DOSY NMR methods. It has been impossible to physically separate the unstable intermediates; therefore, the structures were thus far unidentified. It has been possible to elucidate the structures of these unstable intermediates using Diffusion-Ordered Spectroscopy (DOSY) methods for the reaction in an NMR tube. The DOSY methods resolved the spectra of each starting compound, intermediate and product having different diffusion coefficients. The structure of the intermediate was shown to be due to the bonding of diethylborane to the nitrogen atom of the alkoxyamino group.     

Suppressing one‐bond homonuclear 13C,13C scalar couplings in the J‐HMBC NMR experiment: application to 13C site‐specifically labeled oligosaccharides

Site‐specific ¹³C isotope labeling is a useful approach that allows for the measurement of homonuclear ¹³C,¹³C coupling constants. For three site‐specifically labeled oligosaccharides, it is demonstrated that using the J‐HMBC experiment for measuring heteronuclear long‐range coupling constants is problematical for the carbons adjacent to the spin label. By incorporating either a selective inversion pulse or a constant‐time element in the pulse sequence, the interference from one‐bond ¹³C,¹³C scalar couplings is suppressed, allowing the coupling constants of interest to be measured without complications. Experimental spectra are compared with spectra of a nonlabeled compound as well as with simulated spectra. The work extends the use of the J‐HMBC experiments to site‐specifically labeled molecules, thereby increasing the number of coupling constants that can be obtained from a single preparation of a molecule. Copyright © 2014 John Wiley & Sons, Ltd.     

High‐resolution NMR correlation experiments in a single measurement (HR‐PANACEA)

Three important NMR pulse sequences, INADEQUATE, HSQC and three‐dimensional HMBC have been combined into a single entity called high‐resolution Parallel Acquisition NMR: an All‐in‐one Combination of Experimental Applications (HR‐PANACEA) to provide reliable structural information about a small molecule in a single measurement. This exploits a recent instrumental development that permits simultaneous acquisition of signals from several nuclear species, using multiple receivers. Where high‐precision values of the long‐range heteronuclear splittings are important, selected regions of a large experimental data matrix are extracted and examined with the highest possible resolution. The J‐doubling technique is then applied to derive precise values for these couplings. As proof of principle, the method is applied to the molecule of methyl salicylate, confirming the expected conformation of the C? O? H moiety. Copyright © 2010 John Wiley & Sons, Ltd.     

Synthesis of (1α)‐1,25‐Dihydroxyvitamin D3 with a β‐Positioned Seven‐Carbon Side Chain at C(12)

A convergent synthesis of an analogue of (1α)‐1,25‐dihydroxyvitamin D₃ ( 1b ) with a C₇ side chain at C(12), i.e., of 5 (Fig.), is described. A key step of the synthesis is the assembly of the triene system by a Pd^II‐catalyzed ring closure of an enol triflate (‘bottom’ fragment) followed by coupling of the resulting Pd^II intermediate with an alkenylboronate (‘upper’ fragment) (Scheme 2). The synthetic strategy allows isotopic labelling at the end of the synthesis.     

NMR Spectroscopic Study of the Self‐Aggregation of 3‐Hexen‐1,5‐diyne Derivatives

The self‐assembly of polycatenar molecules derived from 1,6‐diphenyl‐3,4‐dipropyl‐3‐hexen‐1,5‐diyne has been studied in detail by solution NMR spectroscopy. The analysis of the concentration‐ and temperature‐dependent evolution of the chemical shifts and the diffusion coefficients in [D₁₂]cyclohexane agrees well with an isodesmic model of association in this solvent. The association constants for the stacking and entropy and enthalpy of the process have been obtained. The driving force for the aggregation process is provided by a negative enthalpy (ΔH), which is partially compensated by a negative entropy (ΔS). A structural study of the self‐assembly in solution has been carried out with the help of NOESY NMR spectroscopic experiments.     

Sorption/diffusion behaviour of anionic surfactants in polyacrylamide hydrogels: from experiment to modelling

The sorption and diffusion processes of anionic surfactants with different chain length through polyacrylamide hydrogels with low swelling degree have been studied by electrical conductivity measurements. The multicomponent equilibrium equation has been used to model the sorption isotherms of different anionic surfactant in the hydrogels. Such isotherms show that initial rapid sorption of unimer surfactant into the membranes occurs, suggesting that non-freezing water can be involved in these interactions. In aqueous solution, at concentrations near and above the critical micelle concentration an anti-co-operative region is found. The diffusion coefficients of the anionic surfactants inside the hydrogel matrix show that the mobility of diffusing surfactant entities is dependent on cross-linker concentration and chain length. The Cukier hydrodynamic model and the free volume theory as modified by Peppas and Reinhart were applied to explain the dependence of the diffusion coefficients of surfactant on surfactant concentration inside the hydrogel. The hydrodynamic model was applied with success to the more hydrophilic surfactant, sodium 1-octanesulfonate, showing that the diffusion coefficients, D, increase when the resistance to hydrodynamic medium decreases; when the surfactant chain length increases (sodium dodecyl sulfate and sodium 1-hexadecane sulphonate) the variation of D with the free volume can only be understood considering the sieving effect produced by the surfactant inside gel.     

1H and 13C NMR data of methyl tetra‐O‐benzoyl‐D‐pyranosides in acetone‐d6

Complete assignments of ¹H‐ and ¹³C‐NMR resonances of five methyl tetra‐O‐benzoyl‐D‐pyranosides based on ¹H, ¹³C, 2D DQF–COSY, HMQC, HMBC and HSQC–TOCSY experiments have been performed. Copyright © 2009 John Wiley & Sons, Ltd.     

Stabilization of a standard gas mixture generator with diffusion tubes

Summary The generator contains diffusion tubes of known length and internal diameter. Once produced, the mixture of the carrier gas and acetone, the reference material, is sent through a chromatographic flame ionisation detector. Its signal reaches a constant level after a time corresponding to the stabilization time of the generator. The technique described is simple and gives repeatable results.     

3‐Methylflavones characterization revisited: complete assignment of 1H and 13C NMR data

Ten 3‐methylflavone derivatives were studied. Previously reported NMR data of some derivatives were corrected and/or completed, including the complete assignment of the two known natural derivatives. The complete ¹H and ¹³C NMR assignments were achieved by combination of one‐dimensional and two‐dimensional NMR experiments. Copyright © 2013 John Wiley & Sons, Ltd.     

1H and 13C NMR spectral assignments of pyridinium salts linked to a N‐9 or N‐3 adenine moiety

¹H and ¹³ C NMR spectral data of 13 new compounds containing a 4‐(dimethylamino)‐ or 4‐(pyrrolidin‐1‐yl)pyridinium moiety linked to the N‐9 or N‐3 nitrogen atom of an adenine moiety were assigned. 1D and 2D NMR experiments (DEPT, HSQC and HMBC) allowed the unequivocal identification of N‐9 and N‐3 isomers. Copyright © 2012 John Wiley & Sons, Ltd.     

Synthesis and structure elucidation of three series of nitro‐2‐styrylchromones using 1D and 2D NMR spectroscopy

2‐Styrylchromones, although scarce in nature, constitute a group of oxygen heterocyclic compounds which have shown significant biological activities. New nitro‐2‐styrylchromones have been synthesised by the Baker–Venkataraman method, and the structure elucidation was accomplished using extensive 1D (1H, 13C) and 2D NMR spectroscopic studies (COSY, HSQC and HMBC experiments). Copyright © 2009 John Wiley & Sons, Ltd.     

NMR spectroscopic characterization of new 2,3‐dihydro‐1,3,4‐thiadiazole derivatives

The ¹H and ¹³C NMR resonances of twenty‐seven 2,2‐dimethyl‐5‐(2‐nitrophenyl‐5‐substituted)‐2,3‐dihydro‐1,3,4‐thiadiazoles, and twenty‐seven 3‐acyl‐5‐(2‐amino‐5‐substituted)‐2,2‐dimethyl‐2,3‐dihydro‐1,3,4‐thiadiazoles were assigned completely using the concerted application of one‐dimensional and two‐dimensional experiments (DEPT, HMQC and HMBC). NOESY experiments, X‐ray crystallography and conformational analysis confirm the preferred conformation of these compounds. Copyright © 2012 John Wiley & Sons, Ltd.     

Complete 1H and 13C signal assignment of prenol‐10 with 3D NMR spectroscopy

The complete assignment of ¹H and ¹³C chemical shifts of natural abundance prenol‐10 is reported for the first time. It was achieved using 3D NMR experiments, which were based on random sampling of the evolution time space followed by multidimensional Fourier transform. This approach makes it possible to acquire 3D NMR spectra in a reasonable time and preserves high resolution in indirectly detected dimensions. It is shown that the interpretation of 3D COSY–HMBC and 3D TOCSY–HSQC spectra is crucial in the structural analysis of prenol‐10. Copyright © 2009 John Wiley & Sons, Ltd.     

Massively parallel implementation of 3D‐RISM calculation with volumetric 3D‐FFT

A new three‐dimensional reference interaction site model (3D‐RISM) program for massively parallel machines combined with the volumetric 3D fast Fourier transform (3D‐FFT) was developed, and tested on the RIKEN K supercomputer. The ordinary parallel 3D‐RISM program has a limitation on the number of parallelizations because of the limitations of the slab‐type 3D‐FFT. The volumetric 3D‐FFT relieves this limitation drastically. We tested the 3D‐RISM calculation on the large and fine calculation cell (2048³ grid points) on 16,384 nodes, each having eight CPU cores. The new 3D‐RISM program achieved excellent scalability to the parallelization, running on the RIKEN K supercomputer. As a benchmark application, we employed the program, combined with molecular dynamics simulation, to analyze the oligomerization process of chymotrypsin Inhibitor 2 mutant. The results demonstrate that the massive parallel 3D‐RISM program is effective to analyze the hydration properties of the large biomolecular systems. © 2014 Wiley Periodicals, Inc.     

Acetone‐induced polymerisation of 3‐aminopropyltrimethoxysilane (APTMS) as revealed by NMR spectroscopy

We followed the reactivity of acetone with 3‐aminopropyltrimethoxysilane, a potential organosilane coupling agent, by ¹H, ¹³C and ²⁹Si NMR spectroscopy. Selective 1D and 2D‐edited NMR experiments significantly contributed to simplify the spectral complexity of reaction solution and elucidated molecular structures within progressive reaction phases. The course of the 3‐aminopropyltrimethoxysilane reaction with acetone was shown by a progressive decrease of both reactants, and a concomitant appearance of water and methanol, due to formation of imine and hydrolysis of alkoxysilane groups, respectively. The occurrence of multiple siloxane linkages in a progressively larger cross‐linked macromolecular structure was revealed by DOSY‐NMR experiments and new signals in ²⁹Si‐NMR spectra at different reaction times. The NMR approach described here may be applied to investigate the reactivity of other γ‐aminopropylalkoxysilanes and contribute to define procedures for the preparation of silica‐based materials. Copyright © 2014 John Wiley & Sons, Ltd.     

Acrylic‐Acid‐Functionalized PolyHIPE Scaffolds for Use in 3D Cell Culture

This study describes the development of a functional porous polymer for use as a scaffold to support 3D hepatocyte culture. A high internal phase emulsion (HIPE) is prepared containing the monomers styrene (STY), divinylbenzene (DVB), and 2‐ethylhexyl acrylate (EHA) in the external oil phase and the monomer acrylic acid (Aa) in the internal aqueous phase. Upon thermal polymerization with azobisisobutyronitrile (AIBN), the resulting porous polymer (polyHIPE) is found to have an open‐cell morphology and a porosity of 89%, both suitable characteristics for 3D cell scaffold applications. X‐ray photo­electron spectroscopy reveals that the polyHIPE surface contained 7.5% carboxylic acid functionality, providing a useful substrate for subsequent surface modifications and bio‐conjugations. Initial bio‐compatibility assessments with human hepatocytes show that the acid functionality does not have any detrimental effect on cell adhesion. It is therefore believed that this material can be a useful precursor scaffold towards 3D substrates that offer tailored surface functionality for enhanced cell adhesion.