Synthesis and Stereochemical Revision of the C31–C67 Fragment of Amphidinol 3

Amphidinol 3 (AM3) is a marine natural product produced by the dinoflagellate Amphidinium klebsii. Although the absolute configuration of AM3 was determined in 1999 by extensive NMR analysis and degradation of the natural product, it was a daunting task because of the presence of numerous stereogenic centers on the acyclic carbon chain and the limited availability from natural sources. Thereafter, revisions of the absolute configurations at C2 and C51 were reported in 2008 and 2013, respectively. Reported herein is the revised absolute configuration of AM3: 32S, 33R, 34S, 35S, 36S, and 38S based on the chemical synthesis of partial structures corresponding to the C31–C67 fragment of AM3 in combination with degradation of the natural product. The revised structure is unique in that both antipodal tetrahydropyran counterparts exist on a single carbon chain. The structural revision of AM3 may affect proposed structures of congeners related to the amphidinols.     

Synthesis of aromatic amine phosphonato ester derivatives from the stereoselective reaction between triphenyl phosphite and dimethyl acetylenedicarboxylate in the presence of derivatives of aromatic amines

Aromatic amine phosphonato esters 4a–d were obtained in excellent yields from the 1:1:1 addition reaction between triphenyl phosphite and dimethyl acetylenedicarboxylate in the presence of NH‐aromatic amines such as 2‐aminobenzophenone, 2‐aminoacetophenon, methyl‐2‐aminobenzoate, and 2‐aminobenzonitrile. In the recent works, the assignments of the configuration of 4a–d corresponding to the three‐bond carbon‐phosphorus coupling, ³Jpc, was determined on the basis of coupling constants by the Karplus equation as 2R *, 3R *or 2S *, 3S * while they were 2R *, 3S * or 2S *, 3R * in our previous works in the presence of same solvent. © 2009 Wiley Periodicals, Inc. Heteroatom Chem 20:240–245, 2009; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20541     

Absolute stereochemistry of amphidinolide C

[structure in text] The absolute configurations at 12 chiral centers in amphidinolide C (1), a potent cytotoxic 25-membered macrolide isolated from a marine dinoflagellate Amphidinium sp., were determined to be 3S, 4R, 6R, 7R, 8R, 12R, 13S, 16S, 20R, 23R, 24R, and 29S by combination of NMR analyses, degradation experiments, and synthesis of the C-1-C-7 segment.     

Rogiolenyne A,B, and C: The First Branched Marine C15 Acetogenins. Isolation from the Red Seaweed Laurencia microcladia or the Sponge Spongia zimocca of II Rogiolo

It is shown here that the red seaweed Laurencia microcladia, collected off the torrent II Rogiolo, south of Livorno, contains rogiolenyne A (= (?)-(1R*,2S*,3R*,5S*,7S*)-2-(bromomethyl)-5-[(Z)-1-chlorohex-3-en-5-ynyl]-3-ethyl-4,8-dioxabicyclo[5.1.0]octane; (?)- 1 ) while the sponge Spongia zimocca, which grows in the same small area, contains rogiolenyne B (= (?)-(2R*3R*,4R*,5R*,7S*)-3-(bromomethyl)-5-chloro-7-[(Z)-1-chlorohex-3-en-5-ynyl]-2-ethyloxepan-4-ol; (?)- 4a ) and its acetate, rogiolenyne C((?)- 4b ). These structures, which are based on extensive NMR and MS data and on chemical transformation, are the first examples of branched marine C₁₅ acetogenins. Biogenesis of (?)- 1 in L. microcladia is thought to involve C(12) extrusion form a C₁₅ linear tetraen-1-yne precursor via H⁺-induced cyclopropane ring closure, followed by Br⁺-induced cyclopropane ring opening, aided by C–O^? attack (Scheme 2). It is also proposed that transfer of (?)- 1 to S. zimocca is followed by epoxide ring opening by Cl^? to give (?)- 4a and acetylation to give (?)- 4b .     

3-Hydroxydihydrobenzofuran glucosides from Gnaphalium polycaulon

A new 3-hydroxydihydrobenzofuran glucoside, gnaphaliol 9-O-β-D-glucopyranoside (2), was isolated from the aerial parts of Gnaphalium polycaulon together with 1-{(2R*,3S*-3-(β-D-glucopyranosyloxy)-2,3-dihydro-2-[1-(hydroxyl methyl)vinyl]-1-benzofuran-5-yl}-ethanone or gnaphaliol 3-O-β-D-glucopyranoside (1), (Z)-3-hexenyl O-β-D-glucopyranoside (3) and adenosine (4). The absolute configurations at C-2 and C-3 positions of compound 1 were determined to be 2R and 3R. The structures of these compounds were elucidated on the basis of their physical and spectroscopic data.     

Revision of the absolute configurations of bethosides B and C and their aglycone

The absolute stereochemistry of the steroidal saponins bethosides B and C was previously assigned as (22R,25R) on the basis of work that employed Horeau's method. Our studies of helosides A and B created doubt about both the original assignment and consequently our conclusion that relied upon it. The absolute configurations of bethosides B and C are revised to (22S,25R) following X-ray crystallographic analysis of their aglycone. Synthesis and full spectral characterization of both the 22R and 22S aglycones is reported to facilitate future stereochemical assignments in this series of saponins.     

Anomeric effect for a 2,5,7‐triazabicyclo[2.2.1]heptane derivative

A new member of the polyazapolycyclic family of compounds, namely N³,N⁶,2,5,7‐pentaphenyl‐2,5,7‐triazabicyclo[2.2.1]heptane‐3,6‐diamine xylene solvate, C₃₄H₃₁N₅·C₈H₁₀, was synthesized for the first time and the crystal structure is reported. There are no hydrogen bonds joining the molecules. All four chiral C atoms have the same absolute configurations. With regard to the four N—C—N groups, anomeric effects are observed to cause a reduction of C—N bond length and N‐atom pyramidality.     

Antibiotika aus actinomyceten. zur stereochemie der griseorhodine

On the basis of chemical reactions, ¹H-NMR-studies, and model inspections the configurations of the antibiotics griseorhodin A and griseorhodin C have been determined as follows: griseorhodin A C-3'(R), C-2/2' (S), C-3 (R), C-4 (R) or its enantiomer, griseorhodin C C-3' (R), C-2/2' (S), C-3 (R), C-4 (S) or its enantiomer.     

Lipase-catalyzed resolution of (2R*,3S*)- and (2R*,3R*)-3-methyl-3-phenyl-2-aziridinemethanol at low temperatures and determination of the absolute configurations of the four stereoisomers

[reaction: see text] Lipase-catalyzed resolution of (2R*,3S*)-3-methyl-3-phenyl-2-aziridinemethanol, (+/-)-2, at low temperatures gave synthetically useful (2R,3S)-2 and its acetate (2S,3R)-2a with (2S)-selectivity (E = 55 at -40 degrees C), while a similar reaction of (2R*,3R*)-3-methyl-3-phenyl-2-aziridinemethanol, (+/-)-3, gave (2S,3S)-3 and its acetate (2R,3R)-3a with (2R)-selectivity (E = 73 at -20 degrees C). Compound (+/-)-2 was prepared conveniently via diastereoselective addition of MeMgBr to tert-butyl 3-phenyl-2H-azirine-2-carboxylate, (+/-)-1a, which was successfully prepared by the Neber reaction of oxime tosylate of tert-butyl benzoyl acetate 7a. The tert-butyl ester was requisite to promote this reaction. For determination of the absolute configuration of (2S,3R)-2a, enantiopure (2S,3R)-2 was independently prepared in three steps involving diastereoselective methylation of 3-phenyl-2H-azirine-2-methanol, (S)-10, with MeMgBr. The absolute configuration of (2S,3S)-3 was determined by X-ray analysis of the corresponding N-(S)-2-(6-methoxy-2-naphthyl)propanoyl derivative (S,S,S)-13.     

First‐principles conformational analysis of the C36H36 spheriphane,a prototype hydrocarbon host cage

Comprehensive B3LYP/6‐311G** electronic structure calculations establish that, unlike closely related species such as cyclophanes, the C₃₆H₃₆ spheriphane (heptacyclo[13.13.2^1,15.2^8,22.1^3,27.1^6,10.1^13,17.1^20,24] hexatriaconta‐1,3(33),6,8,10(34),13,15,17(35),20,22,24(36),27‐dodecaene) possesses only seven energetically distinct conformers, out of which five exist in enantiomeric pairs and two are achiral. These local energy minima are interrelated through an intricate net of 20 reaction paths involving single inversions at the ? CH₂? CH₂? bridges. In particular, the T and C₃ conformers, which are predicted to coexist in comparable concentrations at ambient temperatures, are linked through three consecutive single‐bridge inversions that proceed through the overall barrier of only 5.3 (kcal/mol). This barrier is compatible with coalescence temperatures well below those employed in the recently measured ¹H and ¹³C NMR spectra, explaining the observed lack of line splittings. Both the T→C₃ pathway and the racemizations of the low‐energy conformers involve C₁ and C₂ intermediates that are expected to be present in detectable amounts. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1279–1286, 2001     

Complete assignment of 1H and 13C NMR data for nine protopanaxatriol glycosides

Nine protopanaxatriol glycosides isolated from mild acid hydrolysis products of crude root saponins of Panax notoginseng were identified as 20(R)‐ginsenoside‐Rh1, 20(S)‐ginsenoside‐Rh1, ginsenoside‐Rg1, ‐Re and ‐Rg2, notoginsenoside‐R2 and ‐R1, a mixture of 25‐hydroxy‐20(S)‐ginsenoside‐Rh1 and its C‐20 (R) epimer, ginsenoside‐Rh4. The complete assignments of the ¹H and ¹³C NMR chemical shifts for these glycosides were obtained by means of 2D NMR techniques, including ¹H–¹H COSY, ROESY, HMQC, HMBC and HMQC‐TOCSY spectra. The glycosylation shift effect of protopanaxatriol and the differences in chemical shifts between 20(R)‐ and 20(S)‐protopanaxatriol isomers are also discussed. Except for ginsenoside‐Re and ‐Rg2, complete NMR assignments of the other seven glycosides are reported for the first time. Copyright © 2002 John Wiley & Sons, Ltd.     

Assignment of relative configurations to acyclic diastereomeric carbinols with the lanthanide shift reagent Eu (fod)3 by 1H and 13C NMR

An assignment of relative configurations has been achieved for the diastereomeric racemates (1R2R,1S2S) and (1R2S,1S2R) of 3,3-dimethyl-1,2-diphenylbutan-1-ol through the comparative analysis of the respective chemical shifts induced by Eu(fod)₃ in the ¹H and ¹³C NMR spectra, and the corresponding conformational distribution.     

Spirodionic acid, a novel metabolite from Streptomyces sp., part 2: total synthesis through a twofold michael addition as a selective spiroannelation strategy

To elucidate the structure of the new natural product spirodionic acid, which has three stereogenic centers of hitherto unknown configuration, two 4-ethenylspiro[4.5]dec-6-en-1,8-diones with opposite relative configuration at C4 and C5 were prepared. The first access involved the synthesis of 3-ethenyl-2-formylcyclopentanone (8) using a three-component coupling process. A sequence of Michael addition to penten-3-one (7) and intramolecular aldol condensation then led to the highly selective formation of the 4S*,5S*-configured spirocycle 5. In contrast, a selective spiroannelation of a cyclohexenone ring was accomplished by a novel type of twofold Michael addition to the dialkenyl ketone 11 with subsequent dehydrogenation to furnish the 4S*,5R*-configured spirocycle 25. Diastereoselective methylation and oxidative degradation then completed a highly efficient synthesis of the natural product as prerequisite for the assignment of its absolute configuration.     

Decomposition of model alkoxyamines in simple and polymerizing systems. II. Diastereomeric N‐(2‐methylpropyl)‐N‐(1‐diethyl‐phosphono‐2,2‐dimethyl‐propyl)‐aminoxyl‐based compounds

Thermal reactions of the alkoxyamine diastereomers DEPN‐R′ [DEPN: N‐(2‐methylpropyl)‐N‐(1‐diethylphosphophono‐2,2‐dimethyl‐propyl)‐aminoxyl; R′: methoxy‐carbonylethyl and phenylethyl] with (R,R) + (S,S) and (R,S) + (S,R) configurations have been investigated by ¹H NMR at 100 °C. During the overall decay the diastereomers interconvert, and an analytical treatment of the combined processes is presented. Rate constants are obtained for the cleavage and reformation of DEPN‐R′ from NMR, electron spin resonance, and chemically induced dynamic nuclear polarization experiments also using 2,2,6,6‐tetramethylpiperidinyl‐1‐oxyl (TEMPO) as a radical scavenger. The rate constants depend on the diastereomer configuration and the residues R′. Simulations of the kinetics observed with styrene and methyl methacrylate containing solutions yielded rate constants for unimeric and polymeric alkoxyamines DEPN‐(M)_n‐R′. The results were compatible with the known DEPN mediation of living styrene and acrylate polymerizations. For methyl methacrylate the equilibrium constant of the reversible cleavage of the dormant chains DEPN‐(M)_n‐R′ is very large and renders successful living polymerizations unlikely. Mechanistic and kinetic differences of DEPN‐ and TEMPO‐mediated polymerizations are discussed. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 3264–3283, 2002     

Stoffwechselprodukte von Mikroorganismen. 218. Mitteilung. Versuche zur Strukturaufklärung von Niphimycin, 1. Teil. Reinigung und Charakterisierung der Niphimycine Iα und Iβ sowie Abbau mit Salpetersäure

On the Structure Elucidation of Niphimycin, Part I. Purification and Characterization of the Niphimycins Iα and Ib?; Degradation by Nitric Acid From a sample of niphimycin the pure components, niphimycin Iα and Ib?, were isolated by column chromatography and droplet counter-current chromatography. They were characterized by UV., IR., ¹H-NMR. (300 MHz) and ¹³C-NMR. spectra. A vigorous degradation of niphimycin with nitric acid, followed by esterification with diazomethane, gave a complex mixture, from which many components could be isolated and identified. Several of the degradation products were synthesized, one of them (dimethyl 2,4-dimethyladipate) in a stereospecific manner, establishing the configuration of two of the centers of chirality of niphimycin. Niphithricin was identified with copiamycin and yielded with nitric acid a degradation mixture very similar to that from niphimycin. The structures of the degradation products are in good agreement with a macrolide-type structure of niphimycin and copiamycin. Further work for structure elucidation of niphimycin and copiamycin is in progress.     

Configurational assignment in alkyl‐branched sugars via the geminal C,H coupling constants

The measurement of the magnitude and sign of ²J(C,H) couplings offers a reliable way to determine the absolute configuration at a carbon center in a fixed cyclic system. A decrease of the dihedral angle ? in the O—C_A—C_B—H fragment always leads to a change of the ²J(C_A,H_B) coupling to more negative values, independent of the type and position of substituents at the two carbon centers. The orientations of the two substituents at C‐3 of the epimeric pair 1 and 2 were determined unambiguously through the measurement of the geminal coupling constants between C‐3 and the hydrogen atoms at C‐2 and C‐4. In particular, ²J(C‐3,H‐2ax) with ?1.5 Hz, ? = 174° in 1 and ?6.6 Hz, ? = 47° in 2 , and ²J(C‐3,H‐4) with +1.5 Hz, ? = 175° in 1 and ?4.7 Hz, ? = 49° in 2 showed the greatest differences between the two epimers. Both couplings therefore allow the determination of the absolute configuration at C‐3. It should be noted, however, that the size of the coupling constants can be different for dihedral angles of nearly identical size, when there are different numbers of electronegative substituents on the two coupling pathways, i.e. no O‐substituent at C‐2, but one axial O‐substituent at C‐4. It becomes clear that it is not sufficient to measure the magnitude of ²J coupling constants only, but that the sign of the geminal coupling is needed to identify the absolute configuration at a chiral center. The coupling of C‐3 with H‐2eq is not useful for the determination of the configuration at C‐3, as the similarity of the dihedral angles ? (O—C‐3—C‐2—H‐2eq) (57° in 1 and 70° in 2 ) leads to identical coupling constants (?6.1 Hz) for both epimers. Copyright © 2003 John Wiley & Sons, Ltd.     

Stereochemistry of the Three-Component Reaction Between the Ley′S Aldehyde,Benzyl Amines,and Trialkyl Phosphites. A New Approach to the Protected Enantiomerically Pure 1-Amino-2,3-Dihydroxypropylphosphonates

Abstract

Enantiomerically pure orthogonally protected dimethyl 1-aminophosphonates (2R,5R,6R,1′R)- and (2R,5R,6R,1′S)-10, phosphonate analogs of 4-hydroxythreonine, were prepared employing the three-component reaction between trimethyl phosphite, (2R,5R,6R)-5,6-dimethoxy-5,6-dimethyl-1,4-dioxane-2-carbaldehyde (Ley’s aldehyde), and benzhydrylamine. Since both aminophosphonates 10 exist in a chloroform solution as single rotamers, the absolute configurations at C1′ were unequivocally established based on ¹H and ¹³C NMR spectral data. Studies on stereochemistry of the addition of trialkyl phosphites showed that in chloroform in all cases the nucleophile preferentially attacks the si-face of the C?N bond, while in alcohols the 1,2-stereoinduction is negligible, and sense of chirality of phenylethylamines is solely responsible for a π-facial discrimination in the 1,3-asymmetric inductions.     

Synthese und Struktur C,N‐difunktionalisierter Sulfinimidamide

Synthesis and Structure of C,N‐difunctionalized Sulfinimideamides Sulfurdiimides RN=S=NR ( 1 a , b ) react in diethyl ether with two equivalents of lithiummethyl to give dimeric C,N‐dilithiummethylenesulfinimideamide ether adducts {Li₂[H₂C–S(NR)₂ · Et₂O]}₂ ( 2 a , b ) ( a : R = ^tBu, b : R = SiMe₃). Metathesis of 2 b with four equivalents of Me₃SiCl, Me₃SnCl or Ph₃SnCl yields the corresponding C,N‐bis‐substituted sulfinimideamides R₃EH₂C–S[N(SiMe₃)₂]NER₃ ( 3 – 5 ) ( 3 : R = Me, E = Sn; 4 : R = Ph, E = Sn; 5 : R = Me, E = Si). The crystal structures of 2 a and 2 b were determined by X‐ray structure analysis. Both compounds form centrosymmetric cage structures consisting of two distorted face sharing cubes ( 2 a : space group P1 (No. 2); Z = 2 (4 · 0,5); 2 b : space group C2/c (No. 15), Z = 4).     

Pteridines,Part CXI,Pteridine‐Based Photoaffinity Probes for Nitric Oxide Synthase and Aromatic Amino Acid Hydroxylases

Various 6‐substituted pteridines and 5,6,7,8‐tetrahydropterins carrying photolabile functions at the side chain (see 7 , 20 – 22 , 34 – 36 , 38 , and 39 ) as well as at the 5‐position (see 27 – 29 ) were synthesized from pterin and from 6‐phenylpterin ( 1 ) and 6‐(hydroxymethyl)pterin ( 10 ). Attachment of the photoaffinity labels via ester bonds required a special protecting‐group strategy based upon acid‐labile (see 30 – 33 ) and β‐eliminating blocking groups (see 17 – 19 ). The 6‐(4‐azidophenyl)pterin ( 7 ) was obtained from 6‐phenylpterin ( 1 ) via intermediates 2 and 4 – 6 , due to the low solubility of simple pterins in general. The pteridine derivatives 21 , 22 , 25 , 26 , 28 , 29 , 32 , 33 , 35 , 36 , 38 , and 39 were screened as inhibitors of neuronal (type I) NO synthase (see Table) from porcine cerebellum, of which 22 , 35 , 36 , and 38 showed interesting inhibitory activity with similar potency and effectiveness.     

Highly Oxygenated Monoterpenes from Eupatorium fortunei

A pair of epimers of highly-oxygenated monoterpenes were isolated from the traditional Chinese medicine Eupatorium fortunei. Their structures were elucidated on the basis of the spectral analysis as （1R＊, 2S＊, 3R＊, 4R＊, 6S＊）-1, 2, 3, 6-tetrehydroxy-p-menthane （1） and （1S＊, 2S＊, 3S＊, 4R＊, 6R＊）-1, 2, 3, 6-tetrehydroxy-p-menthane （2）.