Sequence‐Defined Introduction of Hydrophobic Motifs and Effects in Lectin Binding of Precision Glycomacromolecules

This study investigates the influence of an increasingly hydrophobic backbone of multivalent glycomimetics based on sequence‐defined oligo(amidoamines) on their resulting affinity toward bacterial lectins. Glycomacromolecules are obtained by stepwise assembly of tailor‐made building blocks on solid support, using both hydrophobic aliphatic and aromatic building blocks to enable a gradual change in hydrophobicity of the backbone. Their binding behavior toward model lectin Concanavalin A (ConA) is evaluated using isothermal titration calorimetry (ITC) and surface plasmon resonance (SPR) showing higher affinities for glycomacromolecules with higher content of hydrophobic and aromatic moieties in the backbone. Finally, glycomacromolecules are tested in a bacterial adhesion inhibition study against Escherichia coli where more hydrophobic backbones yield higher inhibitory potentials most likely due to additional secondary interactions with hydrophobic regions of the protein receptor as well as a change in conformation exposing carbohydrate ligands for increased binding. Overall, the results highlight the influence and thereby importance of the polymer backbone itself on the resulting properties of polymeric biomimetics.     

Non‐Covalent Polyvalent Ligands by Self‐Assembly of Small Glycodendrimers: A Novel Concept for the Inhibition of Polyvalent Carbohydrate–Protein Interactions In Vitro and In Vivo

Polyvalent carbohydrate–protein interactions occur frequently in biology, particularly in recognition events on cellular membranes. Collectively, they can be much stronger than corresponding monovalent interactions, rendering it difficult to control them with individual small molecules. Artificial macromolecules have been used as polyvalent ligands to inhibit polyvalent processes; however, both reproducible synthesis and appropriate characterization of such complex entities is demanding. Herein, we present an alternative concept avoiding conventional macromolecules. Small glycodendrimers which fulfill single molecule entity criteria self‐assemble to form non‐covalent nanoparticles. These particles—not the individual molecules—function as polyvalent ligands, efficiently inhibiting polyvalent processes both in vitro and in vivo. The synthesis and characterization of these glycodendrimers is described in detail. Furthermore, we report on the characterization of the non‐covalent nanoparticles formed and on their biological evaluation.     

Multivalent Gold Glycoclusters: High Affinity Molecular Recognition by Bacterial Lectin PA‐IL

Multivalent protein‐carbohydrate interactions are involved in the initial stages of many fundamental biological and pathological processes through lectin–carbohydrate binding. The design of high affinity ligands is therefore necessary to study, inhibit and control the processes governed through carbohydrate recognition by their lectin receptors. Carbohydrate‐functionalised gold nanoclusters (glyconanoparticles, GNPs) show promising potential as multivalent tools for studies in fundamental glycobiology research as well as biomedical applications. Here we present the synthesis and characterisation of galactose functionalised GNPs and their effectiveness as binding partners for PA‐IL lectin from Pseudomonas aeruginosa. Interactions were evaluated by hemagglutination inhibition (HIA), surface plasmon resonance (SPR) and isothermal titration calorimetry (ITC) assays. Results show that the gold nanoparticle platform displays a significant cluster glycoside effect for presenting carbohydrate ligands with almost a 3000‐fold increase in binding compared with a monovalent reference probe in free solution. The most effective GNP exhibited a dissociation constant (K_d) of 50 nM per monosaccharide, the most effective ligand of PA‐IL measured to date; another demonstration of the potential of glyco‐nanotechnology towards multivalent tools and potent anti‐adhesives for the prevention of pathogen invasion. The influence of ligand presentation density on their recognition by protein receptors is also demonstrated.     

A Metal–Organic Framework with a Pore Size/Shape Suitable for Strong Binding and Close Packing of Methane

Much effort has been devoted to develop new porous structures for methane storage. We report a new porous coordination framework showing exceptional methane uptakes (e.g. 263 v/v at 298 K and 65 bar) and adsorption enthalpies (21.6 kJ mol^?1) as high as current record holders functionalized by open metal sites. Computational simulations demonstrated that the hierarchical pore structure consisting of single‐wall nanocages has suitable sizes/shapes and organic binding sites to enforce not only strong host–methane and methane–methane interactions but also dense packing of methane molecules.     

Synthesis and Structures of d10–d10 M2(μ‐dppm)2 Complexes with Sensitive Metal–Metal Distances in Response to the Binding of Sigma Donors

Diphosphine‐bridged dicopper(I) acetate complexes [Cu₂(μ‐dppm)₂(μ‐OAc)]X ( 2 X; X^? = , ) and [Cu₂(μ‐dppm)₂(μ‐OAc)(MeCN)]X ( 4 X) were prepared and the structures of 2 (PF₆ ) and 4 (PF₆ ) determined by X‐ray crystallography. The ground‐state geometries of [Cu₂(μ‐dppm)₂(μ‐OAc)]⁺ and [Cu₂(μ‐dppm)₂(μ‐OAc)(L)]⁺ (L = py, MeCN, THF, acetone, MeOH) were also obtained using density functional theory (DFT). The increased Cu – Cu distances found experimentally and theoretically by comparing the structures of cation [Cu₂(μ‐dppm)₂(μ‐OAc)]⁺ and its derivatives [Cu₂(μ‐dppm)₂(μ‐OAc)(L)]⁺ reflect the binding of various sigma donors (L). When using [Cu₂(μ‐dppm)₂(μ‐OAc)]⁺ as a structure sensor, the electron‐donating strength of a sigma donor can be quantitatively expressed as a DFT‐calculated Cu – Cu distance with the relative strength in the order py > MeCN > THF > acetone > MeOH, as determined.     

The 3[ndσ*(n+1)pσ] Emissions of Linear Silver(I) and Gold(I) Chains with Bridging Phosphine Ligands

The complexes [Au₃(dcmp)₂][X]₃ {dcmp=bis(dicyclohexylphosphinomethyl)cyclohexylphosphine; X=Cl^? ( 1 ), ClO₄^? ( 2 ), OTf^? ( 3 ), PF₆^? ( 4 ), SCN^?( 5 )}, [Ag₃(dcmp)₂][ClO₄]₃ ( 6 ), and [Ag₃(dcmp)₂Cl₂][ClO₄] ( 7 ) were prepared and their structures were determined by X‐ray crystallography. Complexes 2 – 4 display a high‐energy emission band with λ_max at 442–452 nm, whereas 1 and 5 display a low‐energy emission with λ_max at 558–634 nm in both solid state and in dichloromethane at 298 K. The former is assigned to the ³[5dσ*6pσ] excited state of [Au₃(dcmp)₂]³⁺, whereas the latter is attributed to an exciplex formed between the ³[5dσ*6pσ] excited state of [Au₃(dcmp)₂]³⁺ and the counterions. In solid state, complex [Ag₃(dcmp)₂][ClO₄]₃ ( 6 ) displays an intense emission band at 375 nm with a Stokes shift of ≈7200 cm^?1 from the ¹[4dσ*→5pσ] absorption band at 295 nm. The 375 nm emission band is assigned to the emission directly from the ³[4dσ^*5pσ] excited state of 6 . Density functional theory (DFT) calculations revealed that the absorption and emission energies are inversely proportional to the number of metal ions (n) in polynuclear Au^I and Ag^I linear chain complexes without close metal???anion contacts. The emission energies are extrapolated to be 715 and 446 nm for the infinite linear Au^I and Ag^I chains, respectively, at metal???metal distances of about 2.93–3.02 Å. A QM/MM calculation on the model [Au₃(dcmp)₂Cl₂]⁺ system, with Au???Cl contacts of 2.90–3.10 Å, gave optimized Au???Au distances of 2.99–3.11 Å in its lowest triplet excited state and the emission energies were calculated to be at approximately 600–690 nm, which are assigned to a three‐coordinate Au^I site with its spectroscopic properties affected by Au^I???Au^I interactions.     

A Blocking Group Scan Using a Spherical Organometallic Complex Identifies an Unprecedented Binding Mode with Potent Activity In Vitro and In Vivo for the Opioid Peptide Dermorphin

Herein, the selective enforcement of one particular receptor‐ligand interaction between specific domains of the μ‐selective opioid peptide dermorphin and the μ opioid receptor is presented. For this, a blocking group scan is described which exploits the steric demand of a bis(quinolinylmethyl)amine rhenium(I) tricarbonyl complex conjugated to a number of different, strategically chosen positions of dermorphin. The prepared peptide conjugates lead to the discovery of two different binding modes: An expected N‐terminal binding mode corresponds to the established view of opioid peptide binding, whereas an unexpected C‐terminal binding mode is newly discovered. Surprisingly, both binding modes provide high affinity and agonistic activity at the μ opioid receptor in vitro. Furthermore, the unprecedented C‐terminal binding mode shows potent dose‐dependent antinociception in vivo. Finally, in silico docking studies support receptor activation by both dermorphin binding modes and suggest a biological relevance for dermorphin itself. Relevant ligand‐protein interactions are similar for both binding modes, which is in line with previous protein mutation studies.     

Alkoxide Clusters of Molybdenum and Tungsten as Templates for Organometallic Chemistry: Comparison with Carbonyl Clusters of the Later Transition Elements

Alkoxide and carbonyl ligands complement each other because they both behave as “π buffers” to transition metals. Alkoxides, which are π donors, stabilize early transition metals in high oxidation states by donating electrons into vacant d_π orbitals, whereas carbonyls, which are π acceptors, stabilize later transition elements in their lower oxidation states by accepting electrons from filled d_π orbitals. Both ligands readily form bridges that span M? M bonds. In solution fluxional processes that involve bridge–terminal ligand exchange are common to both alkoxide and carbonyl ligands. The fragments [W(OR)₃], [CpW(CO)₂], [Co(CO)₃], and CH are related by the isolobal analogy. Thus the compounds [(RO)₃W ? W(OR)₃], [Cp(CO)₂W?W(CO)₂Cp], hypothetical [(CO)₃Co?Co(CO)₃], and HC?CH are isolobal. Alkoxide and carbonyl cluster compounds often exhibit striking similarities with respect to substrate binding—e.g., [W₃(μ₃-CR)(OR′)₉] versus [Co₃(μ₃-CR)(CO)₉] and [W₄(C)(NMe)(OiPr)₁₂] versus [Fe₄(C)(CO)₁₃]—but differ with respect to M? M bonding. The carbonyl clusters use e_g-type orbitals for M? M bonding whereas the alkoxide clusters employ t_2g-type orbitals. Another point of difference involves electronic saturation. In general, each metal atom in a metal carbonyl cluster has an 18-electron count; thus, activation of the cluster often requires thermal or photochemical CO expulsion or M? M bond homolysis. Alkoxide clusters, on the other hand, behave as electronically unsaturated species because the π electrons are ligand-centered and the LUMO metal-centered. Also, access to the metal centers may be sterically controlled in metal alkoxide clusters by choice of alkoxide groups whereas ancillary ligands such as tertiary phosphanes or cyclopentadienes must be introduced if steric factors are to be modified in carbonyl clusters. A comparison of the reactivity of alkynes and ethylene with dinuclear alkoxide and carbonyl compounds is presented. For the carbonyl compounds CO ligand loss is a prerequisite for substrate uptake and subsequent activation. For [M₂(OR)₆] compounds (M = Mo and W) the nature of substrate uptake and activation is dependent upon the choice of M and R, leading to a more diverse chemistry.     

A Case of Strong Metal–Support Interactions: Combining Advanced Microscopy and Model Systems to Elucidate the Atomic Structure of Interfaces

A symbiosis of advanced scanning probe and electron microscopy and a well‐defined model system may provide a detailed picture of interfaces on nanostructured catalytic systems. This was demonstrated for Pt nanoparticles supported on iron oxide thin films which undergo encapsulation by supporting oxide as a result of strong metal–support interactions.     

A rapid and sensitive UHPLC–MS/MS method for the determination of celosin A in rat plasma with application to pharmacokinetic study

Celosin A (CA), a natural compound isolated from Celosia argentea L., has been shown significant hepatoprotective effect on AHNP‐induced liver injury. This study described a rapid and sensitive ultra‐high‐pressure liquid chromatography–tandem mass spectrometry (UHPLC–MS/MS) assay for determination of CA in rat plasma. Methanol‐mediated precipitation was used for sample pretreatment. Chromatographic separation was achieved on a T3 column with gradient elution using water and acetonitrile as mobile phase. Determination was obtained using an electrospray ionization source in negative selected reaction monitoring mode at the transitions of m/z 793.3 → m/z 661.2 and m/z 955.6 → m/z 793.2 for CA and IS, respectively. The assay was linear over the concentration range 0.25–2500 ng/mL (r > 0.995) with a lowest limit of quantification (LLOQ) of 0.25 ng/mL. The intra‐ and inter‐day precisions (RSD) were 1.65–9.84 and 2.46–13.49%, respectively, while accuracy (RR) ranged from 96.21 to 99.45%, respectively. The recovery ranged from 95.09 to 102.22% and the matrix effect from 98.29 to 100.13%. The analyte was stable under the tested storage conditions. The method has been successfully applied to a preclinical pharmacokinetic study in rats after a single intravenous (2 mg/kg) or oral (50 mg/kg) administration. The oral bioavailability of CA was ~1.94%; in addition, there was no difference between male and female rats. This is the first time of the use of an UHPLC–MS/MS method for determination of CA concentration in rat plasma and for evaluation of its pharmacokinetic behavior.     

High‐throughput LC–MS/MS method with 96‐well plate precipitation for the determination of arotinolol and amlodipine in a small volume of rat plasma: Application to a pharmacokinetic interaction study

A rapid, sensitive, and selective liquid chromatography with tandem mass spectrometry method was developed and fully validated for the simultaneous quantification of arotinolol and amlodipine in rat plasma. Two internal standards were introduced with metoprolol as the internal standard of arotinolol and (S)‐amlodipine‐d4 as the internal standard of amlodipine. The analytes were isolated from 50.0 μL plasma samples by a simple protein precipitation using acetonitrile. The chromatographic separation was achieved in 5 min on a C18 column. The mobile phase consisted of phase A 5% methanol and phase B 95% methanol (both containing 0.5% formic acid and 5 mM ammonium acetate) and was delivered in gradient elution at 0.300 mL/min. Quantification was performed in multiple reaction monitoring mode with the transition m/z 372.1 → 316.1 for arotinolol, m/z 268.2 → 116.2 for metoprolol, m/z 409.1 → 238.1 for amlodipine and m/z 413.1 → 238.1 for (S)‐amlodipine‐d4. Linearity was obtained over the range of 0.200–40.0 ng/mL for arotinolol (r² = 0.9988) and 0.500–100 ng/mL for amlodipine (r² = 0.9985) in rat plasma. The validated data have met the acceptance criteria in FDA guideline. This method was successfully applied to a pharmacokinetic interaction study in rats, and the results indicated that there was no significant drug–drug interaction between arotinolol and amlodipine.     

Detailed Investigation of the Structural,Thermal, and Electronic Properties of Gold Isocyanide Complexes with Mechano‐Triggered Single‐Crystal‐to‐Single‐Crystal Phase Transitions

Mechano‐induced phase transitions in organic crystalline materials, which can alter their properties, have received much attention. However, most mechano‐responsive molecular crystals exhibit crystal‐to‐amorphous phase transitions, and the intermolecular interaction patterns in the daughter phase are difficult to characterize. We have investigated phenyl(phenylisocyanide)gold(I) ( 1 ) and phenyl(3,5‐dimethylphenylisocyanide)gold(I) ( 2 ) complexes, which exhibit a mechano‐triggered single‐crystal‐to‐single‐crystal phase transition. Previous reports of complexes 1 and 2 have focused on the relationships between the crystalline structures and photoluminescence properties; in this work we have focused on other aspects. The face index measurements of complexes 1 and 2 before and after the mechano‐induced phase transitions have indicated that they undergo non‐epitaxial phase transitions without a rigorous orientational relationship between the mother and daughter phases. Differential scanning calorimetry analyses revealed the phase transition of complex 1 to be enthalpically driven by the formation of new aurophilic interactions. In contrast, the phase transition of complex 2 was found to be entropically driven, with the closure of an empty void in the mother phase. Scanning electron microscopy observation showed that the degree of the charging effect of both complexes 1 and 2 was changed by the phase transitions, which suggests that the formation of the aurophilic interactions affords more effective conductive pathways. Moreover, flash‐photolysis time‐resolved microwave conductivity measurements revealed that complex 1 increased in conductivity after the phase change, whereas the conductivity of complex 2 decreased. These contrasting results were explained by the different patterns in the aurophilic interactions. Finally, an intriguing disappearing polymorphism of complex 2 has been reported, in which a polymorph form could not be obtained again after some period of time, even with repeated trials. The present studies provide us with a variety of hitherto unknown insights into mechano‐responsive molecular crystals, which help us to understand the phase transition behaviors upon mechanical stimulation and establish rational design principles.     

The C–HCl2Cu(II) synthon in the structural direction and assembly of supramolecular complexes with the 3,3′-bis(2-benzimidazolyl)-2,2′-dipyridine ligand and its N-substituted derivatives

Three new Cu(II) supramolecular complexes [Cu(L₁)Cl₂]·2DMF (1), [Cu(L₂)Cl₂] (2) and [Cu(L₃)Cl₂]·DMF (3) (L₁ = 3,3′-bis(2-benzimidazolyl)-2,2′-dipyridine, L₂ = 3,3′- bis(N-ethyl-2-benzimidazolyl)-2,2′-dipyridine and L₃ = 3,3′-bis(N-benzyl-2-benzimidazolyl)-2,2′-dipyridine) have been prepared and characterized by elemental analysis, IR spectra and single crystal X-ray diffraction. X-ray structural analysis of L₁, L₂·3.5H₂O and L₃·H₂O indicates that all three ligands adopt the trans conformation with the two benzimidazole fragments located on opposite sides of the dipyridyl backbone. While in complexes 1–3, all the ligands display the cis conformation and behave as bidentate chelating reagents to coordinate with Cu(II). The inorganic chloride ions always act as a reliable hydrogen bonded acceptor in these structures, and the resulting C–HCl₂Cu supramolecular synthons play a significant role in the formation and stabilization of the structures. Moreover, additional non-covalent interactions, such as C–Hπ, are also identified to extend the discrete (0-D) or low-dimensional (1-D) motifs into high-dimensional architectures.     

Ultrasound‐assisted magnetic dispersive solid‐phase microextraction: A novel approach for the rapid and efficient microextraction of naproxen and ibuprofen employing experimental design with high‐performance liquid chromatography

A simple, rapid, and sensitive method for the determination of naproxen and ibuprofen in complex biological and water matrices (cow milk, human urine, river, and well water samples) has been developed using ultrasound‐assisted magnetic dispersive solid‐phase microextraction. Magnetic ethylendiamine‐functionalized graphene oxide nanocomposite was synthesized and used as a novel adsorbent for the microextraction process and showed great adsorptive ability toward these analytes. Different parameters affecting the microextraction were optimized with the aid of the experimental design approach. A Plackett–Burman screening design was used to study the main variables affecting the microextraction process, and the Box–Behnken optimization design was used to optimize the previously selected variables for extraction of naproxen and ibuprofen. The optimized technique provides good repeatability (relative standard deviations of the intraday precision 3.1 and 3.3, interday precision of 5.6 and 6.1%), linearity (0.1–500 and 0.3–650 ng/mL), low limits of detection (0.03 and 0.1 ng/mL), and a high enrichment factor (168 and 146) for naproxen and ibuprofen, respectively. The proposed method can be successfully applied in routine analysis for determination of naproxen and ibuprofen in cow milk, human urine, and real water samples.     

VIBPACK: A package to treat multidimensional electron‐vibrational molecular problems with application to magnetic and optical properties

We present a FORTRAN code based on a new powerful and efficient computational approach to solve multidimensional dynamic Jahn–Teller and pseudo Jahn–Teller problems. This symmetry‐assisted approach constituting a theoretical core of the program is based on the full exploration of the point symmetry of the electronic and vibrational states. We also report some selected examples of increasing complexity aimed to display the theoretical background as well as the advantages and capabilities of the program to evaluate of the energy pattern, magnetic and optical properties of large multimode vibronic systems. © 2018 Wiley Periodicals, Inc.     

A new attempt to reconcile the statistical and phenomenological theories of rubber elasticity

The statistical and phenomenological theories of rubber elasticity are reviewed briefly. Combining recent concepts proposed by Yeoh and Gent, a new theory is proposed. The proposed constitutive model for rubber vulcanizates invokes two mechanisms; one influences behavior at small strains while the other dominates behavior at large strains. Network flaws, such as entanglements, are suspected to be responsible for the first mechanism. Finite extensibility of network chains is identified as the cause of the second. Thus, macroscopic behavior is directly linked to molecular concepts. The proposed theory allows prediction of the stress–strain behavior of a family of four rubber vulcanizates in different modes of deformation (simple extension, compression, and simple shear) from regression analysis of tensile data alone from just one member. © 1997 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 35: 1919–1931, 1997