Instabilities in a two-dimensional polar-filament-motor system

The dynamical interaction between filaments and motor proteins is known for their propensity to self-organize into spatio-temporal patterns. Since the filaments are polar in the sense that motors define a direction of motion on them, the system can display a spatially homogeneous polar-filament orientation. We show that the latter anisotropic state itself may become unstable with respect to inhomogeneous fluctuations. This scenario shares similarities with instabilities in planarly aligned nematic liquid crystals: in both cases the wave vector of the instability may be oriented either parallel or oblique to the polarity axis. However, the encountered instabilities here are long-wave instead of short-wave and the destabilizing modes are drifting ones due to the polar symmetry. Additionally a nonpropagating transverse instability is possible. The stability diagrams related to the various wave vector orientations relative to the polarity axis are determined and discussed for a specific model of motor-filament interactions.     

Pulses of tunable size near a subcritical bifurcation

We show that a nonlinear gradient term can be used to tune the width of pulse-like solutions to a generalized quintic Ginzburg-Landau equation. We investigate the dynamics of these solutions and show that weakly turbulent patches can persist for long times. Analogies with turbulent spots in plane Couette flows are discussed. Received: 29 May 1997 / Revised: 16 March 1998 / Accepted: 30 April 1998     

Dynamics of spatio-temporal defects in the Taylor-Dean system

The dynamics of defects in a pattern of traveling inclined rolls has been investigated. Two regimes were identified in the neighborhood of defects: a diffusive regime, with a negative phase diffusion coefficient, and a coalescence regime in which the phase gradient diverges in time following a power law behavior. The observed periodic nucleation of defects is related to the frequency inhomogeneity induced by the disymmetry of the wave amplitude. Amplitude holes have been observed in the secondary modulated pattern. Received 23 February 1999 and Received in final form 26 May 1999     

Selection of dune shapes and velocities Part 1: Dynamics of sand, wind and barchans

Almost fifty years of investigations of barchan dunes morphology and dynamics is reviewed, with emphasis on the physical understanding of these objects. The characteristic quantities measured on the field (shape, size, velocity) and the physical problems they rise are presented. Then, we review the dynamical mechanisms explaining the formation and the propagation of dunes. In particular a complete and original approach of the sand transport over a flat sand bed is proposed and discussed. We conclude on open problems by outlining future research directions. Received 22 December 2001 / Received in final form 31 May 2002 Published online 31 July 2002     

Selection of dune shapes and velocities Part 2: A two-dimensional modelling

We present in this paper a simplification of the dune model proposed by Sauermann et al. which keeps the basic mechanisms but allows analytical and parametric studies. Two kinds of purely propagative two dimensional solutions are exhibited: dunes and domes. The latter, by contrast to the former, do not present a slip face. Their shape and velocity can be predicted as a function of their size. We recover that dune profiles are not scale invariant (small dunes are flatter than the large ones), and that the inverse of the velocity grows almost linearly with the dune size. We furthermore get the existence of a critical mass below which no dune solution exists. It rises the problem of dune nucleation: how can dunes appear if any bump below this minimal mass gets eroded and disappears? The linear stability analysis of a flat sand bed shows that it is unstable at large wavelengths: dune can in fact nucleate from a small sand mass if the proto-dune is sufficiently long. Received 22 December 2001 / Received in final form 31 May 2002 Published online 31 July 2002     

Size and stability of liposomes: A possible role of hydration and osmotic forces

Dynamic light scattering and electrophoretic mobility measurements have been used to characterize the size, size distribution and zeta potentials (ζ-potentials) of egg yolk phosphatidylcholine (EYPC) liposomes in the presence of monovalent ions ( Na⁺ and K⁺). To study the stability of liposomes the Derjaguin-Landau-Verwey-Overbeek (DLVO) theory has been extended by introducing the hydrated radius of the adsorbed ions onto the liposome surfaces. The decrease of liposome size is explained on the basis of the membrane impermeability to some ions which generate osmotic forces, which leads to evacuate water from liposome inside.     

Oscillatory convection in binary mixtures: Thermodiffusion,solutal buoyancy,and advection

The role of thermodiffusive generation of concentration fluctuations via the Soret effect, their contribution to the buoyancy forces that drive convection, the advective mixing effect of the latter, and the diffusive homogenisation are compared and elucidated for oscillatory convection. Numerically obtained solutions of the field equations in the form of spatially extended relaxed traveling waves, of standing waves, and of the transient growth of standing waves and their transition to traveling waves are discussed as well as spatially localized convective states of traveling waves that are surrounded by the quiescent fluid.     

Super lattice formation of an array of volatile wetting droplets

For an ordered array of critical volatile wetting droplets the formation of a super lattice by an Ostwald-ripening-like competition process is considered. The underlying diffusion problem is treated within a quasistatic approximation and to first order in the inverse droplets distance. The approach is rather general but a square lattice and a triangular lattice are studied explicitly. Dispersion relations for the super lattice growth of these arrays are calculated. Received 29 November 1999 and Received in final form 15 February 2000     

Dynamics and mechanics of motor-filament systems

Motivated by the cytoskeleton of eukaryotic cells, we develop a general framework for describing the large-scale dynamics of an active filament network. In the cytoskeleton, active cross-links are formed by motor proteins that are able to induce relative motion between filaments. Starting from pair-wise interactions of filaments via such active processes, our framework is based on momentum conservation and an analysis of the momentum flux. This allows us to calculate the stresses in the filament network generated by the action of motor proteins. We derive effective theories for the filament dynamics which can be related to continuum theories of active polar gels. As an example, we discuss the stability of homogenous isotropic filament distributions in two spatial dimensions.     

Spatio-temporal patterns in the thermoconvection of a planar nematic layer: II. Experiments

We study experimentally the evolution of thermoconvection in a laterally extended planar nematic layer, at zero or weak stabilizing magnetic field. As the applied thermal gradient is increased, a cascade of symmetry breakings occurs, towards structures of increasing spatial complexity, and ultimately towards oscillating states. The patterns are characterized optically, and simple models for the distortion of the vertical (out of plane) component of the director field are proposed. Received: 1st December 1997 / Revised: 25 May 1998 / Accepted: 2 June 1998     

Fingering instability in a water-sand mixture

The temporal evolution of a water-sand interface driven by gravity is experimentally investigated. By means of a Fourier analysis of the evolving interface the growth rates are determined for the different modes appearing in the developing front. To model the observed behavior we apply the idea of the Rayleigh-Taylor instability for two stratified fluids. Carrying out a linear stability analysis we calculate the growth rates from the corresponding dispersion relations for finite and infinite cell sizes. Based on the theoretical results the viscosity of the suspension is estimated to be approximately 100 times higher than that of pure water, in agreement with other experimental findings. Received: 12 December 1997 / Revised: 23 March 1998 / Accepted: 28 April 1998     

Fractal aggregates induced by liposome-liposome interaction in the presence of Ca2+

We present a study of the fractal dimension of clusters of large unilamellar vesicles (LUVs) formed by egg yolk phosphatidylcholine (EYPC), dimyristoylphosphocholine (DMPC) and dipalmitoylphosphocholine (DPPC) induced by Ca²⁺ . Fractal dimensions were calculated by application of two methods, measuring the angular dependency of the light scattered by the clusters and following the evolution of the cluster size. In all cases, the fractal dimensions fell in the range from 2.1 to 1.8, corresponding to two regimes: diffusion-limited cluster aggregation (DLCA) and reaction-limited cluster aggregation (RLCA). Whereas DMPC clusters showed a typical transition from the RLCA to the DLCA aggregation, EYPC exhibited an unusual behaviour, since the aggregation was limited for a higher concentration than the critical aggregation concentration. The behaviour of DPPC was intermediate, with a transition from the RLCA to the DLCA regimes with cluster sizes depending on Ca²⁺ concentration. Studies on the reversibility of the aggregates show that EYPC and DPPC clusters can be re-dispersed by dilution with water. DMPC does not present reversibility. Reversibility is evidence of the existence of secondary minima in the DLVO potential between two liposomes. To predict these secondary minima, a correction of the DLVO model was necessary taking into account a repulsive force of hydration.     

Adhesion-induced lateral phase separation in membranes

Adhesion between membranes is studied using a phenomenological model, where the inter-membrane distance is coupled to the concentration of sticker molecules on the membranes. The model applies to both adhesion of two flexible membranes and to adhesion of one flexible membrane onto a second membrane supported on a solid substrate. We mainly consider the case where the sticker molecules form bridges and adhere directly to both membranes. The calculated mean-field phase diagrams show an upward shift of the transition temperature indicating that the lateral phase separation in the membrane is enhanced due to the coupling effect. Hence the possibility of adhesion-induced lateral phase separation is predicted. For a particular choice of the parameters, the model exhibits a tricritical behavior. We also discuss the non-monotonous shape of the inter-membrane distance occurring when the lateral phase separation takes place. The inter-membrane distance relaxes to the bulk values with two symmetric overshoots. Adhesion mediated by other types of stickers is also considered. Received 12 January 2000 and Received in final form 15 May 2000     

Statistical indicators of collective behavior and functional clusters in gene networks of yeast

We analyze gene expression time-series data of yeast (S. cerevisiae) measured along two full cell-cycles. We quantify these data by using q-exponentials, gene expression ranking and a temporal mean-variance analysis. We construct gene interaction networks based on correlation coefficients and study the formation of the corresponding giant components and minimum spanning trees. By coloring genes according to their cell function we find functional clusters in the correlation networks and functional branches in the associated trees. Our results suggest that a percolation point of functional clusters can be identified on these gene expression correlation networks.     

Phase separation dynamics in small-world media

We present results of a numerical study of phase separation dynamics of a two-dimensional quenched system which has a small-world topology, both with and without the conserved order parameter. We examine how the domain coarsening changes with the density of long-range connections (shortcuts). It is demonstrated that the shortcuts have directly opposite effects, i.e., a speeding up of the coarsening process of reaching a fully uniform state, and a freezing of the system in a disordered metastable state.     

Phase transitions in social networks

We study a model of network with clustering and desired node degree. The original purpose of the model was to describe optimal structures of scientific collaboration in the European Union. The model belongs to the family of exponential random graphs. We show by numerical simulations and analytical considerations how a very simple Hamiltonian can lead to surprisingly complicated and eventful phase diagram.     

Convective and absolute instabilities in the subcritical Ginzburg-Landau equation

We study the nature of the instability of the homogeneous steady states of the subcritical real Ginzburg-Landau equation in the presence of group velocity. The shift of the absolute instability threshold of the trivial steady state, induced by the destabilizing cubic nonlinearities, is confirmed by the numerical analysis of the evolution of its perturbations. It is also shown that the dynamics of these perturbations is such that finite size effects may suppress the transition from convective to absolute instability. Finally, we analyze the instability of the subcritical middle branch of steady states, and show, analytically and numerically, that this branch may be convectively unstable for sufficiently high values of the group velocity. Received 17 December 1998