Gold-catalyzed bis-cyclization of 1,2-diol- or acetonide-tethered alkynes. Synthesis of β-lactam-bridged acetals: a combined experimental and theoretical study

2-Azetidinone-tethered alkyn-1,2-diols or alkynyl acetonides, readily prepared from imines of (R)-2,3-O-isopropylideneglyceraldehyde, were used as starting materials for the regio- and diastereospecific catalytic bis-oxycyclization reaction in the presence of a gold/acid binary system. Interestingly, in contrast to the gold-catalyzed reactions of N-tethered terminal alkynes, which lead to the corresponding 6,8-dioxabicyclo[3.2.1]octane derivatives (proximal adduct), the reactions of substituted alkynic diols and acetonides under identical conditions gave the 7,9-dioxabicyclo[4.2.1]nonane derivatives (distal adducts) as the sole products, through exclusive 7-endo/5-exo bis-oxycyclizations by initial attack of the oxygen atom to the external alkyne carbon. Moreover, the mildness of the method allowed the incorporation of a 1,3-diyne moiety as reactive partner, displaying exquisite chemoselectivity toward the internal alkynic moiety. In order to confirm the mechanistic proposal, labeling studies with deuterium oxide have been performed. Besides, density functional calculations were performed to gain insight into the mechanisms of the bis-oxycyclization reactions.     

Thermodynamic study on salt effects on complex formation of α-, β- and γ-cyclodextrins with p-aminobenzoic acid

The aim of this work was to gain a deeper understanding of salt effects in the inclusion complex formation of cyclodextrins. For this purpose, thermodynamic study of complex formation of α-, β- and γ-cyclodextrins with p-aminobenzoic acid was carried out in water and solutions of KCl, KBr, KH₂PO₄ and K₂SO₄ (0.2 mol/kg). Stability constants were calculated from the binding isotherms obtained on the basis of ¹H NMR measurements. Enthalpy and entropy of complex formation were estimated from the van’t Hoff plots. It was found that effects of KCl, KH₂PO₄ and K₂SO₄ are insignificant, while the influence of KBr on complex formation of cyclodextrins with p-aminobenzoic acid is more pronounced and results in a decrease of the stability constants. Specific action of Br⁻ is caused by the ability of these anions to penetrate into macrocyclic cavity. Coexistence of two complexation equilibria in KBr solution is accompanied by significant solvent reorganization originated from more intensive dehydration of the interacting species. This results in an increase of the enthalpy and entropy of complex formation. Manifestation of Br⁻ effect was found to be the same in the binding of p-aminobenzoic acid with α-, β- and γ-cyclodextrins.     

Two-photon absorption properties of two-dimensional π-conjugated chromophores: combined experimental and theoretical study

The two-photon absorption (TPA) properties of four TPEB [tetrakis(phenylethynyl)benzene] derivatives (TD, para, ortho, and meta) with different donor/acceptor substitution patterns have been investigated experimentally by the femtosecond open-aperture Z-scan method and theoretically by the time-dependent density-functional theory (TDDFT) method. The four compounds show relatively large TPA cross sections, and the all-donor substituted species (TD) displays the largest TPA cross-section σ(2) = 520 ± 30 GM. On the basis of the calculated electronic structure, TD shows no TPA band in the lower energy region of the spectrum because the transition density is concentrated on particular transitions due to the high symmetry of the molecular structure. The centrosymmetric donor-acceptor TPEB para shows excitations resulting from transitions centered on D-π-D and A-π-A moieties, as well as transition between the D-π-D and A-π-A moieties; this accounts for the broad nature of the TPA bands for this compound. Calculations for two noncentrosymmetric TPEBs (ortho and meta) reveal that the diminished TPA intensities of higher-energy bands result from destructive interference between the dipolar and three-state terms. The molecular orbitals (MOs) of the TPEBs are derivable with linear combinations of the MOs of the two crossing BPEB [bis(phenylethynyl)benzene] derivatives. Overall, the characteristics of the experimental spectra are well-described based on the theoretical analysis.     

Complexes of α-, β-, and γ-cyclodextrins with nitrophenols: A theoretical study of the structure and energy

Detailed quantum mechanical calculations of the interaction of cyclodextrin (α-, β-, and γ-CD) with 4-nitrophenol (I), 4-nitro-2,6-dimethylphenol (II), 4-nitro-3,5-dimethylphenol (III), and their anions (IVVI) with the formation of intercalation complexes are carried out for the first time. The calculations of the compounds are performed within the density functional theory by the hybrid Becke–Lee–Yang–Parr (B3LYP) method with LanL2DZ basis sets. For the α-CD+III and α-CD+VI complexes it is shown that a nitrophenol molecule of III and a nitrophenolate anion of VI are not contained in the α-CD torus, which agrees with the experimental equilibrium constants. It is found that the calculated equilibrium constants of the formation of guest–host complexes with phenolate anions are much larger than those of neutral molecules. The most stable CD complexes with nitrophenols and their anions should be expected for γ-CD. The β-CD complexes when the guest enters into the host cavity are formed only with compounds I, V, and VI.     

Volumetric study on the inclusion complex formation of α- and β-cyclodextrin with 1-alkanols at different temperatures

The partial molar volumes (V_a) of 1-alkanols (carbon number, m=5, 6, 7) in - and -cyclodextrin (CD) solutions at 5.00 mmol kg^–1 have been determined as a function of alkanol concentration (C_a) between 293.2 and 308.2 K by using a dilatometer. It has been observed that with an increase in C_a, V_a increased in -CD solution but decreased in -CD solution, asymptotically to a value of V_a in CD-free water. The dependence of V_a on C_a provided the binding constant (K) of 1:1 complex, the volume change in complex formation, and the partial molar volume of complex itself. The complex formation mechanism has been discussed on the basis of these values and their carbon number dependences in the respect of geometric behavior, hydrophobic interaction, and van der Waals interaction. It is concluded that the CD cavity in water is not rigid but flexible for fitting in nicely with guest molecule.     

Quantum chemical properties investigation and molecular docking analysis with DNA topoisomerase II of β-carboline indole alkaloids from Simaba guianensis: a combined experimental and theoretical DFT study

Structural Chemistry - A theoretical and experimental DFT study of the vibrational, structural, and quantum properties of 9-methoxy-canthin-6-one (I) and...     

Combined study of vibrational spectra of α-carboline by theoretical and experimental IR methods

This paper reports the application of a scaled ab initio density-functional theory (DFT) at B3LYP/ccpvtz level to calculate the vibrational spectrum of α-carboline (9H-pyrido[2,3-b]indole), αCB, as well as the comparison of theoretical results with the experimental spectra. They have been recorded in Cl₃CD solution and in solid KBr pellets in the 4000-700 cm⁻¹ range. To test the adequacy of the computational method to reproduce the experimental vibrational spectra of αCB, this computational method has also been applied to the related and simpler molecules indole, Ind, and α-azaindole, αAInd. Previously reported assignments for the last compounds have been taken as reference for the subsequent assignments of the αCB vibrational bands. The results show that the hydrogen bonding interactions mainly affect the high frequency region while the skeletal vibration region keeps rather unchanged with the physical state of the sample. Moreover, apart from the vibrations involving the whole carboline nucleus, most of the experimental bands retain their original Ind and/or αAInd frequencies, thus allowing an easy assignment of the computed modes to the αCB vibrational bands.     

Inclusion complex formation of β-cyclodextrin and Naproxen: a study on exothermic complex formation by differential scanning calorimetry

Inclusion complex formation between β-cyclodextrin and Naproxen was investigated using differential scanning calorimetry (DSC) as a function of the β-cyclodextrin-to-Naproxen molar ratio, ranging from 0:5:1 to 5:1. When these mixtures are heated above the melting temperature of Naproxen, an exothermic peak is observed at a temperature slightly higher than the melting peak of Naproxen. This peak, which has not been previously reported, has been interpreted as an exothermic energy of inclusion complex formation. The magnitude of this complex formation peak was found to be dependent upon the composition of the β-cyclodextrin and Naproxen mixture and increased in magnitude to a maximum value at a β-cyclodextrin:Naproxen molar ratio of 2:1. In addition, Naproxen recrystallization and re-melting peaks seen in the cooling and re-heating scans, respectively, decreased in magnitude with increasing molar ratio and totally disappeared for the mixture with 5:1 of β-cyclodextrin to Naproxen ratio indicative of complete inclusion of Naproxen in the cyclodextrin cavities. Complete inclusion was further reflected by the disappearance of key Naproxen peaks in Fourier transform infrared spectra of samples recovered from DSC experiments. The large excess of β-cyclodextrin needed to fully complex the Naproxen was found to be due to slow kinetics. Increasing the hold time after the initial melting led to inclusion efficiencies up to 95 % even for the 2:1 mixture. These experiments suggest that ratios of β-cyclodextrin:Naproxen 2:1 or greater facilitate the process by increasing the presence of cyclodextrin molecules in the close proximity of the drug molecules and lead to high inclusion efficiencies.     

Transition-metal,organic solvent and base free α-hydroxylation of β-keto esters and β-keto amides with peroxides in water

Without employing any transition metal, organic solvent and base, a facile, economical and environmentally friendly strategy has been developed for the α-hydroxylation of β-keto esters and β-keto amides with peroxides via radical cross-coupling reaction in water under open-air conditions. This protocol allows a convenient access to various α-hydroxy-β-keto esters and α-hydroxy-β-keto amides with up to 92% yield (34 examples). Moreover, the reaction was successfully scaled up to gram quantity and mechanistic studies showed the radical pathway was involved in this hydroxylation.     

Kinetics and mechanism of thermal gas-phase elimination of α- and β- (N-arylamino)propanoic acid: experimental and theoretical analysis

2-(N-Phenylamino)propanoic acid 1a and 3-(N-phenylamino)-propanoic acid 2a together with four of their aryl analogues were pyrolysed in the gas-phase. The reactions were homogeneous and free from catalytic and radical pathways. Analysis of the pyrolysate of 1 showed the elimination products to be carbon monoxide, acetaldehyde and aniline, while the pyrolysate of 2 reveals the formation of acrylic acid in addition to aniline. Theoretical study of the pyrolysis of 2 using an ab initio SCF method lend support to a reaction pathway involving a 4-membered cyclic transition state.     

Optical and nonlinear optical properties of new Schiff’s bases: experimental versus theoretical study of inclusion interactions

Experimentally and theoretically were studied the physical properties of 19 new Schiff’s bases and their different protonated forms, depending on reaction conditions. It was elucidated the correlation between the type of molecular architecture, substituents and pH of the medium on first hyperpolarizability (β) with regard to the potential application of these compounds as organic nonlinear optical materials. The structure and optical properties were also studied, comparing quantum chemical data and experimental results from the mass spectrometry, electronic absorption, diffuse reflectance, and fluorescence spectroscopy, vibrational spectroscopy in condense phase, nuclear magnetic resonance, as well as thermal methods.     

Experimental and theoretical study on the structure and vibrational spectra of β-2-aminopyridinium dihydrogenphosphate

Experimental and theoretical vibrational spectra of β-2-aminopyridinium dihydrogenphosphate (β-2APDP) have been investigated. The FT-IR spectrum of β-2APDP was recorded in the region 4000-400 cm(-1). The optimized molecular structure and theoretical vibrational frequencies of β-2APDP have been investigated using ab initio Hartree-Fock (HF) and density functional B3LYP method with 6-311++G(d,p) basis set. The optimized geometric parameters (bond lengths and bond angles) and theoretical frequencies have been compared with the corresponding experimental data and it is found that they agree well with each other. All the assignments of the theoretical frequencies were performed by potential energy distributions using VEDA 4 program. Furthermore, the used scale factors were obtained from the ratio of the frequency values of the strongest peaks in the experimental and theoretical IR spectra. From the results it was concluded that the B3LYP method is superior to the HF method for the vibrational frequencies.     

Formation and structure of Co₂O₄: a combined IR matrix isolation and theoretical study

The formation and structure of dicobalt tetroxide (Co?O?) has been investigated using matrix isolation in solid neon and argon coupled to infrared spectroscopy and quantum chemical methods. It is found that Co?O? can be formed by dimerization of cobalt dioxide without activation energy by diffusion of ground state CoO? molecules at 9 K in the dark. The IR data on eight fundamentals, isotopic effects and quantum chemical calculations are both consistent with a centro-symmetrical structure with two pairs of equivalent oxygen atoms, engaged in a stronger terminal Co-O bond and in a weaker bridging Co-O-Co position. Evidence for other, metastable states is also presented, but the data are not conclusive. The electronic structure and formation pathway has been investigated using the Tao-Perdew-Staroverov-Scuseria/triple-zeta valence polarived basis set (TPSS/TZVP) and broken symmetry unrestricted density functional theory (BS-UDFT) approach and the ground electronic state is predicted to be an open shell 1Ag singlet with the quintet, triplet, septet, and nonet states above by 3.3, 4.9, 9.3, and 27.7 kcal/mol, respectively, but certainly has a complex multireference character that hinders the use of more precise multireference approaches. Different formation pathways have been considered, and the 2(O═Co═O) → Co?O? dimerization reaction is found to be the only barrierless channel and to be strongly exothermic. Comparisons with another transition metal (TM) oxide system (V?O?) suggests that the difference in predicted ground state geometries in TM?O? systems might be due in HOMO-LUMO shapes of the isolated dioxide subunits and optimal overlap configurations.     

Arylhydrazones of α-keto esters via methanolysis of dichlorodiazabutadienes: synthesis and structural study

Novel approach to methyl 2-aryl-2-(arylhydrazono) acetates via methanolysis of dichlorodiazabutadienes was developed. Hydrogen bonding in methyl Z-2-phenyl-2-(phenyl-hydrazono) acetate was explored by DFT calculations and topological analysis of the electron density distribution within the framework of Bader’s theory (QTAIM method).