Perfluoroalkyl chains direct novel self-assembly of insulin

The self-assembly of biopharmaceutical peptides into multimeric, nanoscale objects, as well as their disassembly to monomers, is central for their mode of action. Here, we describe a bioorthogonal strategy, using a non-native recognition principle, for control of protein self-assembly based on intermolecular fluorous interactions and demonstrate it for the small protein insulin. Perfluorinated alkyl chains of varying length were attached to desB30 human insulin by acylation of the ε-amine of the side-chain of LysB29. The insulin analogues were formulated with Zn(II) and phenol to form hexamers. The self-segregation of fluorous groups directed the insulin hexamers to self-assemble. The structures of the systems were investigated by circular dichroism (CD) spectroscopy and synchrotron small-angle X-ray scattering. Also, the binding affinity to the insulin receptor was measured. Interestingly, varying the length of the perfluoroalkyl chain provided three different scenarios for self-assembly; the short chains hardly affected the native hexameric structure, the medium-length chains induced fractal-like structures with the insulin hexamer as the fundamental building block, while the longest chains lead to the formation of structures with local cylindrical geometry. This hierarchical self-assembly system, which combines Zn(II) mediated hexamer formation with fluorous interactions, is a promising tool to control the formation of high molecular weight complexes of insulin and potentially other proteins.     

Hydrogen-bonded assembly of methanol on Cu(111)

Investigation of methanol's surface chemistry on metals is a crucial step towards understanding the reactivity of this important chemical feedstock. Cu is a relevant metal for methanol synthesis and reforming, but due to the weak interaction of methanol with Cu, an atomic scale view of methanol's coverage-dependent ordering and self-assembly on Cu(111), the most abundant facet of most nanoparticles, has not yet been possible. Low and variable temperature scanning tunneling microscopy coupled with density functional theory reveal a coverage-dependent range of highly ordered structures stabilized by two hydrogen bonds per molecule. While extended chains that resemble the hydrogen-bonded zigzag structures reported for solid methanol are an efficient way to pack methanol at higher coverages, lower surface coverages yield isolated hexamer units. These hexamers form the same number of hydrogen bonds as the chains but appear to repel one another on the surface. Annealing treatments lead to the desorption of methanol with almost no decomposition. This data serves as a useful guide to both the preferred adsorption geometries and energies of a variety of methanol structures on Cu(111) surfaces as a function of surface coverage.     

Beyond Bragg scattering: the structure of AgCN determined from total neutron diffraction

Total neutron diffraction has yielded accurate bond lengths, Ag-C = Ag-N = 2.06 A and C-N = 1.16 A, for the disordered crystalline solid AgCN. This information cannot be obtained from analysis of Bragg scattering studies, because the (-Ag-CN-)(n) chains are randomly displaced along the chain axis relative to each other by a root-mean-square displacement of 0.24 A at 10 K. These results show the power of total neutron diffraction for determining structure in disordered systems.     

Structure and adsorption of water in nonuniform cylindrical nanopores

Grand canonical Monte Carlo simulations are used to examine the adsorption and structure of water in the interior of cylindrical nanopores in which the axial symmetry is broken either by varying the radius as a function of position along the pore axis or by introducing regions where the characteristic strength of the water-nanopore interaction is reduced. Using the extended simple point charge (SPC∕E) model for water, nanopores with a uniform radius of 6.0 A? are found to fill with water at chemical potentials approximately 0.5 kJ∕mol higher than the chemical potential of the saturated vapor. The water in these filled pores exists in either a weakly structured fluidlike state or a highly structured uniformly polarized state composed of a series of stacked water clusters with pentagonal cross sections. This highly structured state can be disrupted by creating hydrophobic regions on the surface of the nanopore, and the degree of disruption can be systematically controlled by adjusting the size of the hydrophobic regions. In particular, hydrophobic banded regions with lengths larger than 9.2 A? result in a complete loss of structure and the formation of a liquid-vapor coexistence in the tube interior. Similarly, the introduction of spatial variation in the nanopore radius can produce two condensation transitions at distinct points along the filling isotherm.     

Colloid-polymer mixtures in solution with refractive index matched acrylate colloids

Colloid-polymer (CP) mixtures extend between two limiting cases, the colloid limit with the polymer coil size small compared to the colloid radius Rcol and the protein limit with the colloidal particles much smaller in size than the radius of gyration of the polymer chains Rg. In the present work, model systems are developed for the protein limit. The colloid-solvent pairs are optimized in terms of their isorefractivity in order to facilitate the characterization of large polystyrene chains in suspensions of small colloids. The degree of isorefractivity of colloidal particles was successfully evaluated in terms of a reduced scattering intensity. Two polystyrene samples with radii of gyration of Rg = 96 nm and Rg = 78 nm, respectively, are used. The radii of the colloidal particles are close to Rcol = 12 nm, leading to size ratios of Rg/Rcol = 8 and Rg/Rcol = 6.5. Four colloid solvent systems were found to be suitable for polymer characterization by light scattering, one based on silica particles and three systems with acrylate particles. The present investigation is focused on the three acrylate systems: poly(methyl methacrylate) in ethyl benzoate (ETB) at 7 degrees C, poly(ethyl methacrylate) in toluene at 7 degrees C and poly(ethyl methacrylate) in ETB at 40 degrees C. Characterization of PS chains is for the first time performed in colloid concentrations up to 2.5% by weight. In all cases, the size and shape of the polymer chains remain unchanged. A slight mismatch of the colloid scattering or a limited colloid solubility prevented investigation of PS chains at higher colloid concentration.     

Solution structure of copper-seamed C-alkylpyrogallol[4]arene nanocapsules with varying chain lengths

The stability of copper-seamed C-alkylpyrogallol[4]arene hexamers with varying chain lengths in solution has been studied using small-angle neutron scattering (SANS). The progression in diameter of spherical capsules with increasing alkyl chain lengths of copper-seamed hexamers in solution suggests both robustness as well as a close correlation between the solid phase and solution phase structures.     

Identification of the precursor cluster in thermolysin crystallization solution by molecular dynamics methods

An analysis of the crystal structure of thermolysin revealed four possible precursor clusters (hexamers) of its crystal. Using the method of molecular dynamics and plots of root mean square fluctuation, root mean square deviation and radius of gyration, the most stable hexamer, which is a precursor cluster,was determined. The importance of the established structure of the thermolysin precursor cluster for determining the mechanism of crystal formation is shown.     

Dimethylammonium trichlorocuprate(II): structural transition, low-temperature crystal structure, and unusual two-magnetic chain structure dictated by nonbonding chloride-chloride contacts

Catena(dimethylammonium-bis(mu2-chloro)-chlorocuprate), (CH3)2NH2CuCl3, forms chains of Cu2Cl6(2-) bifold dimers linked along the structural chain axis by terminal chlorides forming long semicoordinate bonds to adjacent dimers. The structural chains are separated by dimethylammonium ions that hydrogen bond to chloride ions of the dimers. A structural phase transition below room temperature removes disorder in the hydrogen bonding, leaving adjacent dimers along the chain structurally and magnetically inequivalent, with alternating ferromagnetic and antiferromagnetic pairs. The coupled dimers are magnetically isolated from each other along the structural chain axis by the long semicoordinate Cu-Cl bond. However, the dimers couple to like counterparts on adjacent chains via nonbonding Cl...Cl contacts. The result is two independent magnetic chains, one an alternating antiferromagnetic chain and the other an antiferromagnetic chain of ferromagnetically coupled copper dimers, which run perpendicular to the structural chains. This magnetostructural analysis is used to fit unusual low-temperature (1.6 K) magnetization vs field data that display a two-step saturation. The structural phase transition is identified with neutron scattering and capacitance measurements, and the X-ray crystal structures are determined at room temperature and 84 K. The results appear to resolve long-standing confusion about the origins of the magnetic behavior of this compound and provide a compelling example of the importance of two-halide magnetic exchange.     

Electrostatic potentials and covalent radii

We begin with a brief overview of the electrostatic potential V(r) as a fundamental determinant of the properties of systems of electrons and nuclei. The minimum of V(r) along the internuclear axis between two bonded atoms is a natural and physically meaningful boundary point, at which the electrostatic forces of the two nuclei upon an element of charge exactly cancel. We propose that the distances from nuclei to V(r) bond minima provide the basis for a well-defined set of covalent radii. Density functional calculations at the B3PW91/6-311+G** level were carried out for 59 molecules to locate the V(r) minima in 95 bonds and use these as the basis for determining single- and multiple-bond covalent radii for eight first- and second-row atoms plus hydrogen. It was found to be unrealistic to assign a single covalent radius to each atom; different values are needed for bonds to first- and second-row atoms, as well as to hydrogen. Using these results, we are able to predict the bond lengths of 33 single and multiple bonds with average errors of less than 0.04 A relative to experimental data.     

Puroindoline-a, a lipid binding protein from common wheat, spontaneously forms prolate protein micelles in solution

The self-assembly in solution of puroindoline-a (Pin-a), an amphiphilic lipid binding protein from common wheat, was investigated by small angle neutron scattering, dynamic light scattering and size exclusion chromatography. Pin-a was found to form monodisperse prolate ellipsoidal micelles with a major axial radius of 112 ± 4.5 ? and minor axial radius of 40.4 ± 0.18 ?. These protein micelles were formed by the spontaneous self-assembly of 38 Pin-a molecules in solution and were stable over a wide pH range (3.5-11) and at elevated temperatures (20-65 °C). Pin-a micelles could be disrupted upon addition of the non-ionic surfactant dodecyl-β-maltoside, suggesting that the protein self-assembly is driven by hydrophobic forces, consisting of intermolecular interactions between Trp residues located within a well-defined Trp-rich domain of Pin-a.     

Water clusters on Cu(110): chain versus cyclic structures

Water clusters are assembled and imaged on Cu(110) by using a scanning tunneling microscope. Water molecules are arranged along the Cu row to form "ferroelectric" zigzag chains of trimer to hexamer. The trimer prefers the chain form to a cyclic one in spite of the reduced number of hydrogen bonds, highlighting the crucial role of the water-substrate interaction in the clustering of adsorbed water molecules. On the other hand, the cyclic form with maximal hydrogen bonds becomes more favorable for the tetramer, indicating the crossover from chain to cyclic configurations as the constituent number increases.     

Supramolecular polymer chemistry: self-assembling dendrimers using the DDA.AAD (GC-like) hydrogen bonding motif

Heterocyclic unit 2 containing complementary donor-donor-acceptor (DDA) and acceptor-acceptor-donor (AAD) hydrogen bonding arrays at an angle of about 60 degrees was designed to self-assemble into a hexamer. To investigate whether this unit could self-assemble dendrimers, the 2,8-diamino-2-N-ethylpyrimido-(4,5-b)(1,8)naphthyridine-3H-4-one subunit was synthesized with a first (2a), second (2b), and third generation (2c) Fréchet-type dendron attached to the 8-amino group. The synthesis of 2a-c was accomplished in 11 steps beginning with 2,6-diaminopyridine and the corresponding dendron bromide. Studies using (1)H NMR, size exclusion chromatography (SEC), and dynamic light scattering (DLS) support the cooperative formation of cyclic hexamers in apolar solvents. The stability of the self-assembled dendrimers is dependent on the size of the attached dendron, and mixing studies with 2a-c indicate their usefulness in constructing dynamic combinatorial libraries.     

Behavior of thermosensitive graft copolymer with aromatic polyester backbone and poly-2-ethyl-2-oxazoline side chains in aqueous solutions

Thermoresponsive graft copolymers with alkylene-aromatic polyester main chain and poly-2-ethyl-2-oxazoline side chains were synthesized. Two copolymer samples which differed in grafting density (0.5 and 0.7) were studied using dynamic and static light scattering and turbidimetry in aqueous solutions at concentration 0.0053?g?cm^?3. Hydrodynamic radii of scattering objects and their contribution to light scattering were obtained as a function of temperature in a wide temperature interval. Temperatures of phase separation were found out. Effect of grafting density on the copolymer behavior in aqueous solutions upon heating was determined. In particular, the phase separation temperature reduces with the decreasing grafting density.     

Synthesis and Single Crystal Structure of RbEr_2Cu_3Se_5

1 INTRODUCTION Halide fluxes are excellent media for growing single crystals of chalcogenides[1~3]. It is well known that during the single crystal growth via flux methods, occasional inclusion of the flux elements in the structure leads to the formation of new phases[4~9]. Several rare earth chalcogenides have been prepared through such reactive halid flux methods[4~9]. Thus we used RbCl as reactive flux to explore a new quaternary selenide by the reaction of ErCuSe precursor with Rb…     

Self-assembly of l-tryptophan on Cu(111) studied by low-temperature scanning tunneling microscopy

The self-assembly of l-tryptophan on Cu(111) is investigated by an ultrahigh vacuum scanning tunneling microscope (STM) at 4.4 K. When deposited onto the substrate at around 120 K with a coverage of 0.1 monolayer, molecular trimers, tetramers, hexamers, and chains coexist on Cu(111). Then almost all molecules self-assemble into chiral hexamers after being annealed at room temperature. When increasing molecular coverage to the full layer, a new type of chain is observed on the surface. Based on the high-resolution STM images at sub-molecular level, we suggest that the l-tryptophan molecules are present in neutral, zwitterionic or anionic states in these structures.     

Self-assembly of L-tryptophan on Cu(111) studied by low-temperature scanning tunneling microscopy

The self-assembly of L-tryptophan on Cu(111) is investigated by an ultrahigh vacuum scanning tunneling microscope (STM) at 4.4 K. A series of novel supramolecular structures have been prepared with different annealing temperatures.     

Electrophoresis of an ellipsoid along the axis of a cylindrical pore: effect of a charged boundary

The influence of a charged boundary on the electrophoretic behavior of a particle is investigated by considering the electrophoresis of a nonconducting ellipsoid along the axis of a cylindrical pore at the level of the linear Poisson-Boltzmann equation ignoring the polarization effect. The problem considered simulates the electrophoresis conducted in a narrow space such as capillary electrophoresis and electrophoresis through a porous medium. Here, because the effect of electroosmotic flow can be important the electrophoretic behavior is much more complicated than that for the case where a boundary is uncharged. The influences of the thickness of double layer, the aspect ratio of an ellipsoid, the relative radius of a pore, and the charge conditions on the ellipsoid and pore surfaces on the mobility of the ellipsoid are discussed. Several interesting but nonintuitive electrophoretic behaviors are observed.     

Synthesis and Crystal Structure of Poly{diaqua[N-(2-hydroxybenzyl)-D,L- aspartate]cadmium(II)}

1 INTRODUCTION Coordination-driven supramolecular assembly hasattracted great interest in constructing beautiful mo-tifs and developing new materials[1～5]. It is crucial toselect or synthesize suitable bridging organic li-gands[6～10]. The reduced Schiff base N-(2-hydro-xybenzyl)-D,L-amino acid is an excellent ligand forself-assembly with metal ions, not only due to itsprolific coordination sites but also its strong abilityto afford hydrogen bonding from secondary aminegroup and carbox…     

Well-defined nanoparticles formed by hydrophobic assembly of a short and polydisperse random terpolymer, amphipol A8-35

Amphipols are short amphilic polymers designed for applications in membrane biochemistry and biophysics and used, in particular, to stabilize membrane proteins in aqueous solutions. Amphipol A8-35 was obtained by modification of a short-chain parent polymer (poly(acrylic acid); PAA) with octyl- and isopropylamine, to yield an amphiphilic product with an average molar mass of 9-10 kg x mol(-1) (sodium salt form) and a polydispersity index of 2.0 to 3.1, depending on the source of PAA. The behavior of A8-35 in aqueous buffers was studied by size exclusion chromatography, static and dynamic light scattering, equilibrium and sedimentation velocity analytical ultracentrifugation, and small angle neutron scattering. Despite the variable length of the chains and the random distribution of hydrophobic groups along them, A8-35 self-organizes into well-defined assemblies. The data are best compatible with most of the polymer forming compact assemblies (particles) with a molar mass of approximately 40 kg x mol(-1), a radius of gyration of approximately 2.4 nm, and a Stokes radius of approximately 3.15 nm. Each particle contains, on average, four A8-35 macromolecules and 75-80 octyl chains. Neutron scattering reveals a sharp interface between the particles and water. A minor (approximately 0.1%) mass fraction of the material forms much larger aggregates, whose proportion may increase under certain conditions of preparation or handling, such as low pH. They can be removed by gel filtration.     

Single walled carbon nanotube length determination by asymmetrical-flow field-flow fractionation hyphenated to multi-angle laser-light scattering

Asymmetrical flow field-flow fractionation (AFlFFF) hyphenated to multi-angle laser-light scattering (MALS) was evaluated in order to determine single walled carbon nanotube (SWCNT) length distribution. Fractionation conditions were investigated by examining mobile phase ionic strength and pH, channel components and cross-flow rate. Ammonium nitrate-based mobile phase with 10(-5)molL(-1) ionic strength and pH 6 allows the highest sample recovery (89±3%) to be obtained and the lowest loss of the longest SWCNT. A cross-flow rate of 0.9mLmin(-1) leads to avoid any significant membrane-sample interaction. Length was evaluated from gyration radius measured by MALS by comparing SWCNT to prolate ellipsoid. In order to validate the fractionation and the length determination obtained by AFlFFF-MALS, different SWCNT aliquots were collected after fractionation and measured by dynamic light scattering (DLS). AFlFFF is confirmed to operate in normal mode over 100-2000nm length. MALS length determination after fractionation is found to be accurate with 5% RSD. Additionally, a shape analysis was performed by combining gyration and hydrodynamic radii.