Detection of genetically modified organisms in food: critical points for quality assurance

 The detection of genetically modified organisms (GMOs) by the polymerase chain reaction (PCR) is a complex multiparameter problem. Therefore, a number of critical issues in respect to quality control need to be considered. For practical purposes, the PCR process itself can be divided into three subprocesses: template isolation and reaction setup (pre-PCR), PCR reaction and detection of amplification products, and data evaluation (post-PCR). Crucial factors for the pre-PCR process are the following: homogeneity of the sample to be analysed, performance of template isolation and purification in terms of yield and purity, standardized process for the estimation of concentrations of genomic DNA and all reagents used in the reaction. For the PCR itself, crucial factors to be controlled are: setup of reactions, batch to batch variations of reagents, temperature-time programs used for the PCR amplification, and the performance of different types of hardware (e.g. different brands of thermocyclers). The crucial factor for the post-PCR process is the detection of the amplification products of the PCR. The tremendous sensitivity of PCR methods requires a careful and consequent separation of the three processes in terms of hardware, laboratory space and sample handling. The avoidance of contamination is one of the most critical factors. The goal of quality assurance measures must be to ensure appropriate results at maximum sensitivity. The complexity of any PCR system used for the detection of GMOs leads to the requirement of a careful validation process for any laboratory using such methods. For qualitative analyses crucial validation parameters are: specificity, selectivity, repeatability, intermediate precision, reproducibility, limit of detection and robustness. Received: 5 October 1998 / Accepted: 22 February 1999     

Detection methods and performance criteria for genetically modified organisms

Detection methods for genetically modified organisms (GMOs) are necessary for many applications, from seed purity assessment to compliance of food labeling in several countries. Numerous analytical methods are currently used or under development to support these needs. The currently used methods are bioassays and protein- and DNA-based detection protocols. To avoid discrepancy of results between such largely different methods and, for instance, the potential resulting legal actions, compatibility of the methods is urgently needed. Performance criteria of methods allow evaluation against a common standard. The more-common performance criteria for detection methods are precision, accuracy, sensitivity, and specificity, which together specifically address other terms used to describe the performance of a method, such as applicability, selectivity, calibration, trueness, precision, recovery, operating range, limit of quantitation, limit of detection, and ruggedness. Performance criteria should provide objective tools to accept or reject specific methods, to validate them, to ensure compatibility between validated methods, and be used on a routine basis to reject data outside an acceptable range of variability. When selecting a method of detection, it is also important to consider its applicability, its field of applications, and its limitations, by including factors such as its ability to detect the target analyte in a given matrix, the duration of the analyses, its cost effectiveness, and the necessary sample sizes for testing. Thus, the current GMO detection methods should be evaluated against a common set of performance criteria.     

Establishment of a system based on universal multiplex-PCR for screening genetically modified crops

The rapid development of many genetically modified (GM) crops in the past two decades makes it necessary to introduce an alternative strategy for routine screening and identification. In this study, we established a universal multiplex PCR detection system which will effectively reduce the number of reactions needed for sample identification. The PCR targets of this system include the six most frequently used transgenic elements: cauliflower mosaic virus (CaMV) 35S promoter, Agrobacterium tumefaciens nopaline synthase (nos) promoter, Agrobacterium tumefaciens nopaline synthase (nos) terminator, the neomycin phosphotransferase II (nptII) gene, the 5-enolpyruvylshikimate-3-phosphate synthase (CP4 epsps) gene of Agrobacterium tumefaciens strain CP4, and the phosphinothricin N-acetyltransferase (pat) gene. According to the AGBIOS database, the coverage of this detection system is 93% of commercial GM crops. This detection system could detect all certified reference materials (CRMs) at the 1.0% level. The correct combination of all the CRM amplicon patterns proved the specificity of this multiplex PCR system. Furthermore, the amplicon patterns of this multiplex PCR detection system could be used as an index of classification which will narrow the range of possible GM products. The simulation result of this multiplex PCR detection system on all commercialized 139 GM products in the AGBIOS database showed that the maximum number of PCR reactions needed to identify an unknown sample can be reduced to 13. In this study, we established a high-throughput multiplex PCR detection system with feasible sensitivity, specificity, and cost. By incorporating this detection system, the routine GM crop-detection process will meet the challenges resulting from a rapid increase in the number of GM crops in the future.     

Development of agribiotechnology and biosafety regulations used to assess safety of genetically modified crops in Bangladesh

Bangladesh is on the verge of adopting genetically modified (GM) crops for commercial cultivation and consumption as feed and food. Most of the laboratories are engaged in tissue culture and molecular characterization on plants, whereas some have started living modified organism research with shortages of trained manpower, infrastructure, and funding. Nutritionally improved Golden Rice, biotech brinjal, and late blight-resistant potato are in contained trials in a greenhouse, and potato ring spot virus-resistant papaya is in the process of approval for a field trial. The government has taken some initiative in support of GM organism research, which include the formation of a Biotechnology Department in all institutes and the formation of the apex body, the National Task Force Committee on Biotechnology of Bangladesh under the chairpersonship of the Prime Minister. Biosafety policy guidelines and related aspects of biotechnology issues have been approved, and the laws are in the process of being promulgated. Being a party to the Cartagena Protocol, proper biosafety measures are regulated by the appropriate authority as stated. Although there are no laws made yet directly for biosafety of GM crops/foods, the relevant laws on agriculture, medicine, food, import, trade, environment, etc. may suffice and explain the situation.     

Development of miniaturized sample preparation with fibrous extraction media

Introducing fine polymeric filaments as the extraction medium, a miniaturized sample preparation technique for micro-column liquid chromatography (micro-LC) has been developed along with the investigation of a reproducible preparation scheme of the extraction capillary. The polymeric filaments were packed longitudinally into either a fused-silica capillary or a polyether ether ketone (PEEK) capillary of appropriate dimensions, and the extraction capillary was installed to the injection valve in micro-LC system. The number of packed filaments should be precisely counted before the packing process to make sure the reproducible preparation of the extraction capillary. With conventional stationary phase materials for open-tubular gas chromatography, polymeric coating to the surface of the filaments was also studied in order to further enhance the extraction performance and selectivity. Coated with the polymeric material suitable for the extraction of particular analyte, a dramatic improvement on the extraction power was obtained. The results suggest that the future possibility of novel tailored fibrous extraction medium with an appropriate coating on it, especially for the analysis of complex sample matrices.     

Solventless sample preparation techniques based on solid- and vapour-phase extraction

The main objective of this review is to critically evaluate recent developments in solventless sample preparation techniques. The potential of a variety of sample preparation techniques based on solid- and vapour-phase extraction techniques is evaluated. Direct thermal extraction and derivatization processes to facilitate the extraction of analytes in different areas are included. The applicability, disadvantages and advantages of each sample preparation technique for the determination of environmental contaminants in different matrices are discussed.     

A critical comparison of solid sample preparation techniques in infrared spectroscopy

The growing capabilities of FTIR spectrometers and computers have opened the use of new sample preparation techniques in infrared spectroscopy. In addition to the established KBr pellet technique and ATR spectroscopy, diffuse reflectance and photoacoustic spectroscopy are increasing in importance. A systematic experimental comparison of these techniques has been made in order to make proper use of their mutual advantages.     

Phase separation and extraction with acetonitrile for sample preparation in HPLC analysis

Summary Acetonitrile can be salted-out from aqueous solution by adding tetrabutylammonium perchlorate. This phase separation method has been used for the extraction of the Fe(III)-4,7-diphenylphenanthroline complex into acetonitrile followed by direct injection onto an ODS column. The Fe complex is separated by using 9:1 acetonitrile/water as a mobile phase. The proposed reversed-phase high-performance liquid chromatography has been applied to the determination of Fe in serum.     

Detection of genetically modified organisms in foods by protein- and DNA-based techniques: bridging the methods

According to European Commission (EC) Regulation 1139/98, foods and food ingredients that are to be delivered to the final consumer in which either protein or DNA resulting from genetic modification is present, shall be subject to additional specific labeling requirements. Since 1994, genetically altered tomatoes, squash, potatoes, canola, cotton, and soy have been on the market. Recently, insect-resistant and herbicide-tolerant maize varieties have been introduced. Soy and maize are 2 of the most important vegetable crops in the world. During the past 4 years, both protein- and DNA-based methods have been developed and applied for detection of transgenic soy and maize, and their derivatives. For protein-based detection, specific monoclonal and polyclonal antibodies have been developed; for immunochemical detection, Western blot analysis and enzyme-linked immunosorbent assays are the most prominent examples. For detection of genetically modified organisms (GMOs) at the level of DNA, polymerase chain reaction-based methods are mainly used. For these reactions, highly specific primer sets are needed. This study compares the principally different methods. Specificity of methods and the possible risks of false-positive or false-negative results are considered in relation to sampling, matrix effects, and food processing procedures. In addition, quantitative aspects of protein- and DNA-based GM detection methods are presented and discussed. This is especially relevant as EC regulation 49/2000, which defines a threshold for an unintentional comingling of 1%, came into force on April 10, 2000.     

Detection and identification of multiple genetically modified events using DNA insert fingerprinting

Current screening and event-specific polymerase chain reaction (PCR) assays for the detection and identification of genetically modified organisms (GMOs) in samples of unknown composition or for the detection of non-regulated GMOs have limitations, and alternative approaches are required. A transgenic DNA fingerprinting methodology using restriction enzyme digestion, adaptor ligation, and nested PCR was developed where individual GMOs are distinguished by the characteristic fingerprint pattern of the fragments generated. The inter-laboratory reproducibility of the amplified fragment sizes using different capillary electrophoresis platforms was compared, and reproducible patterns were obtained with an average difference in fragment size of 2.4 bp. DNA insert fingerprints for 12 different maize events, including two maize hybrids and one soy event, were generated that reflected the composition of the transgenic DNA constructs. Once produced, the fingerprint profiles were added to a database which can be readily exchanged and shared between laboratories. This approach should facilitate the process of GMO identification and characterization.     

Development of agricultural biotechnology and biosafety regulations used to assess the safety of genetically modified crops in Iran

Rapid progress in the application of biotechnological methodologies and development of genetically modified crops in Iran necessitated intensive efforts to establish proper organizations and prepare required rules and regulations at the national level to ensure safe application of biotechnology in all pertinent aspects. Practically, preparation of a national biotechnology strategic plan in the country coincided with development of a national biosafety framework that was the basis for the drafted biosafety law. Although biosafety measures were observed by researchers voluntarily, the establishment of national biosafety organizations since the year 2000 built a great capacity to deal with biosafety issues in the present and future time, particularly with respect to food and agricultural biotechnology.     

Assessing the allergenicity of proteins introduced into genetically modified crops using specific human IgE assays

Global commercial production of genetically modified (GM) crops has grown to over 67 million hectares annually, primarily of herbicide-tolerant and insect protection crop varieties. GM crops are produced by the insertion of specific genes that either encode a protein, or a regulatory RNA sequence. A comprehensive safety evaluation is conducted for each new commercial GM crop, including an assessment of the potential allergenicity of any newly introduced protein. If the gene was derived from an allergenic organism, or the protein sequence is highly similar to a known allergen, immunoassays, e.g., Western blot assays and enzyme-linked immunosorbent assay tests, are performed to identify protein-specific IgE binding by sera of individuals allergic to the gene source, or the source of the sequence-matched allergen. Although such assays are commonly used to identify previously unknown allergens, criteria have not been established to demonstrate that a protein is unlikely to cause allergic reactions. This review discusses factors that affect the predictive value of these tests, including clinical selection criteria for serum donors, selection of blocking reagents to reduce nonspecific antibody binding, inhibition assays to verify specificity of binding, and scientifically justified limits of detection (sensitivity) in the absence of information regarding biological thresholds.     

A modified and convenient method for the preparation of N-phenylpyrazoline derivatives

Ten new N-phenylpyrazoline derivatives have been synthesized in high yields by condensation of chalcones with phenylhydrazine in the presence of potassium carbonate in reflux conditions. The workup is simple and involves treatment with ice-cold water. As compared with the previous method a considerable increase in the reaction rate with better yields has been observed. Published in Khimiya Geterotsiklicheskikh Soedinenii, No. 7, pp. 1032–1036, July, 2006.     

Solid-phase extraction of prostanoids using an automatic sample preparation system.

A commercial automated solid-phase extraction system for cyclooxygenase arachidonic acid metabolites in urine samples has been evaluated. Comparison of manual and automatic batch (36 samples) extraction procedures for tritium labelled prostanoids added as tracers to urine samples has shown equivalent results with recoveries greater than 90% for prostaglandins E2, F2alpha and 6-keto prostaglandin F1alpha as well as thromboxane B2. Analyte stability is not affected by the automated procedure, which uses less solvents and has a faster overall processing time than the manual method. The automated system has been applied to the extraction of prostanoids in urine samples from workers exposed to dichloroethane.     

含羟基中环二胺及其衍生物的合成

合成了一类含羟基中环二胺及其羧酸、磷酸衍生物,且利用强酸型阳离子交换树脂分离得到了游离的含羟基中环二胺羧酸衍生物。     

The preparation of ferrocenedithiocarboxylic acid derivatives and their spectral properties

Ferrocenedithiocarboxylic acid and various derivatives have been prepared and characterized. The molecular extinction coefficients for the n → π transition of the thiocarbonyl group in the visible spectra of these derivatives are 10–15 fold greater than expected for aromatic dithio acids.     

Development and use of extraction sample preparation in the chromatographic-mass spectrometric studies of cognac products

The distribution of ethanol and butanol between n-hexane and aqueous solutions of ammonium sulfate at 20 ± 1°C was studied over an ideal concentration region of the substances in the organic phase. The distribution constants of the substances and the increments of the methylene and hydroxyl groups of the alcohols in the logarithm of the distribution constant were calculated. It was found that an increase in the salt concentration in the aqueous phase resulted in a considerable increase in the increment of the methylene group and significantly improved the alcohol separation efficiency. The dependence of the distribution coefficients of ethanol and butanol on the concentration of ethanol in the aqueous phase was studied. A dramatic decrease in the increment of the methylene group was found as the ethanol concentration in the salt phase was increased above 4.5 vol %. A procedure was developed for extraction sample preparation for the subsequent determination of the characteristic components of cognac products and for the authentication of these products by gas chromatography. The essence of this procedure consists in the hexane extraction of butanol and other hydrophobic substances from cognac product samples prediluted with an aqueous solution of ammonium sulfate. In this case, the major portion of ethanol, as well as hydrophilic and thermally unstable impurities, which complicate analysis with direct sample injection, remained in the salt solution. The procedure was tested with 16 samples of cognac and cognac spirits from Georgia, including both authentic and adulterated products.     

Dynamic extraction in microcolumn as a method for the sample preparation of oil-contaminated soils

A method is proposed for the sample preparation of oil-contaminated soils based on the dynamic extraction of petroleum products in a microcolumn of special design. By an example of the analysis of GSO (State Standard Sample) 8673-2005 of an oil-contaminated soil and model soil samples, a comparative evaluation of the efficiency of dynamic and batch (shaking in a shaker) extraction for the sample preparation of oil-polluted soils is carried out. The concentration of petroleum products in the extracts was determined by IR spectrometry. It was shown that the recovery of petroleum products into carbon tetrachloride in extraction in a microcolumn is, on the average, 50% higher than that in mixing the sample and reagent in a shaker. The rapid and efficient extraction of petroleum products in a microcolumn is possible because of dynamic extraction occurring at a constant renewal of the reagent.     

QuEChERS sample preparation for the determination of pesticides and other organic residues in environmental matrices: a critical review

Quick, Easy, Cheap, Effective, Rugged, and Safe (QuEChERS) is an extraction and clean-up technique originally developed for recovering pesticide residues from fruits and vegetables. Since its introduction, and until December 2013, about 700 papers have been published using the QuEChERS technique, according to a literature overview carried out using SciFinder, Elsevier SciVerse, and Google search engines. Most of these papers were dedicated to pesticide multiresidue analysis in food matrices, and this topic has been thoroughly reviewed over recent years. The QuEChERS approach is now rapidly developing beyond its original field of application to analytes other than pesticides, and matrices other than food, such as biological fluids and non-edible plants, including Chinese medicinal plants. Recently, the QuEChERS concept has spread to environmental applications by analyzing not only pesticides but also other compounds of environmental concern in soil, sediments, and water. To the best of our knowledge, QuEChERS environmental applications have not been reviewed so far; therefore, in this contribution, after a general discussion on the evolution and changes of the original QuEChERS method, a critical survey of the literature regarding environmental applications of conventional and modified QuEChERS methodology is provided. The overall recoveries obtained with QuEChERS and other extraction approaches (e.g., accelerated solvent extraction, ultrasonic solvent extraction, liquid/solid extraction, and soxhlet extraction) were compared, providing evidence for QuEChERS higher recoveries for various classes of compounds, such as biopesticides, chloroalkanes, phenols, and perfluoroalkyl substances. The role of physicochemical properties of soil (i.e., clay and organic carbon content, as well as cation exchange capacity) and target analytes (i.e., log K_OW, water solubility, and vapor pressure) were also evaluated in order to interpret recovery and matrix effect data.     

Comparison of commercial solid-phase extraction sorbents for the sample preparation of potato glycoalkaloids

In this study five different commercial sorbents C18, SCX, CN, Certify and Oasis HLB were compared for the solid-phase extraction of potato glycoalkaloids. The recoveries were determined using alpha-solanine, alpha-chaconine and alpha-tomatine, which contained dehydrotomatine as an impurity, as standard compounds. The samples were analysed by reversed-phase liquid chromatography under gradient elution conditions using a Zorbax Rx-C18 column and acetonitrile-25 mM triethylammonium phosphate buffer (pH 3.0) as the mobile phase. The highest recovery (approximately 100%) was achieved with Oasis HLB (60 mg) cartridges. An acetic acid extract of wild Solanum brevidens leaf material was used for the testing of a clean-up procedure. The SCX proved to be the most selective and efficient for removing the undesired components from the leaf extract.