Elsewhere in biology

A selection of interesting papers published last month in Chemistry & Biology’s sister journals, Current Biology and Structure with Folding & Design, chosen and summarized by the staff of Chemistry & Biology.     

Packing in honeycomb networks

Molecules arranging themselves into predictable patterns on silicon chips could lead to microprocessors with much smaller circuit elements. Mathematically, assembling in predictable patterns is equivalent to packing in graphs. An H-packing of a graph G is a set of vertex disjoint subgraphs of G, each of which is isomorphic to a fixed graph H. If H is the complete graph K ₂, the maximum H-packing problem becomes the familiar maximum matching problem. In this paper we give algorithms to find a perfect packing of HC(n) with P ₆ and K _1,3 when n is even and thus determines their packing numbers. Further we also study the packing of HC(n) with 1, 3-dimethyl cyclohexane.     

Elsewhere in biology

A selection of interesting papers published last month in Chemistry & Biology’s sister journals, Current Biology and Structure with Folding & Design, chosen and summarized by the staff of Chemistry & Biology.     

Elsewhere in biology

A selection of interesting papers published last month in Chemistry & Biology’s sister journals, Current Biology and Structure with Folding & Design, chosen and summarized by the staff of Chemistry & Biology.     

Elsewhere in biology

A selection of interesting papers published last month in Chemistry & Biology’s sister journals, Current Biology and Structure with Folding & Design, chosen and summarized by the staff of Chemistry & Biology.     

Effect of Soil Type: Qualitative and Quantitative Analysis of Phytochemicals in Some Browse Species Leaves Found in Savannah Biome of South Africa

In semi-arid regions, browse plant species are used as feed and for medicinal purposes for both animals and humans. The limitation of the utilization of these species to medicinal purposes or as feed for livestock is a lack of knowledge on the concentration level of phytochemicals and other bioactive compounds found in these plants. The study sought to assay the qualitative and quantitative bioactive constituents of some browse species found in the savannah biome of South Africa, viz. Adansonia digitate, Androstachys johnsonii, Balanites maughamii, Berchemia discolor, Berchemia zeyheri, Bridelia mollis hutch, Carissa edulis, Catha edulis, Colophospermum mopane, Combretum Imberbe, Combretum molle, Combretum collinum, Dalbergia melanoxylon, Dichrostachys cinerea, Diospros lycioides, Diospyros mespiliformis, Euclea divinorum, Flueggea virosa, Grewia flava, Grewia flavescens, Grewia monticola, Grewia occidentalis, Melia azedarach, Peltophorum africanum, Prosopis velutina, Pseudolachnostylis maprouneifolia, Pterocarpus rotundifolius, Schinus molle, Schotia brachypetala, Sclerocarya birrea, Searsia lancea, Searsia leptodictya, Searsia pyroides, Senegalia caffra, Senegalia galpinii, Senegalia mellifera, Senegalia nigrescens, Senegalia polyacantha, Strychnos madagascariensis, Terminalia sericea, Trichilia emetic, Vachellia erioloba, Vachellia hebeclada, Vachellia karroo, Vachellia nilotica, Vachellia nilotica subsp. Kraussiana, Vachellia rechmanniana, Vachellia robusta, Vachellia tortilis, Vachellia tortilis subsp. raddiana, Vangueria infausta, and Ziziphus mucronata. These browse species’ leaf samples were harvested from two provinces (Limpopo and North-West) of South Africa. The Limpopo province soil type was Glenrosa, Mispah, and Lithosols (GM-L), and the soil types in the North-West Province were Aeolian Kalahari Sand, Clovelly, and Hutton (AKS-CH). The harvested browse samples were air dried at room temperature for about seven days and ground for analysis. The methanol and distilled water extracts of the browse species leaves showed the presence of common phytoconstituents, including saponins, flavonoids, tannins, phenols, cardio glycosides, terpenoids, and phlobatannins, as major active compounds in browse species leaves. In the quantitative analysis, phytochemical compounds, such as soluble phenols, insoluble tannins, and condensed tannins, were quantified for common species found in both sites. Two-way ANOVA and multivariate analysis were used to test soil type and species effect on soluble phenols, insoluble tannins, and condensed tannins of woody species. Dichrostachys cinerea (0.1011% DM) in GM-L soil type and Z. mucronata (0.1009% DM) in AKS-CH soil type showed the highest (p < 0.05) concentration of soluble phenols. In AKS-CH soil type, D. cinerea (0.0453% DM) had the highest insoluble tannins concentration, while V. hebeclada had the lowest (0.0064% DM) insoluble tannins content. Vacchelia hebeclada had lower (p < 0.05) condensed tannins concentration levels than all other browse plants in both soil types. Under multivariate analysis tests, there was a significant effect (p < 0.001) of soil type, species, and soil type x species interaction on soluble phenols, insoluble tannins, and condensed tannins of woody species. In this study, most of the woody species found in GM-L soil type showed a lower amount of tannins than those harvested in AKS-CH soil type. There is a need to identify the amount of unquantified phytochemicals contained in these browse species and valorize the high-bioactive-compound browse species to enhance and maximize browsing of these browse species for animal production.     

Determination of potentially toxic heavy metals in traditionally used medicinal plants for HIV/AIDS opportunistic infections in Ngamiland District in Northern Botswana

The determination of four potentially toxic heavy metals, arsenic, chromium, lead and nickel in twelve plant species used for the treatment of perceived HIV and AIDS-associated opportunistic infections by traditional healers in Ngamiland District in Northern Botswana, a metal mining area, was carried out using atomic absorption spectrometry. The medicinal plants; Dichrostachys cinerea, Maerua angolensis, Mimusops zeyheri, Albizia anthelmintica, Plumbago zeylanica, Combretum imberbe, Indigofera flavicans, Clerodendrum ternatum, Solanum panduriforme, Capparis tomentosa, Terminalia sericea and Maytenus senegalensis contained heavy metals in varying quantities: arsenic 0.19–0.54 μg g⁻¹, chromium 0.15–1.27 μg g⁻¹, lead 0.12–0.23 μg g⁻¹ and nickel 0.09–0.21 μg g⁻¹ of dry weight. Chromium was found to be the most abundant followed by arsenic and lead. Nickel was undetectable in nine plant species. M. senegalensis contained the largest amounts of arsenic, chromium and lead. All metals determined were below the WHO permissive maximum levels. The possible maximum weekly intakes of the heavy metals following treatment regimes were insignificant compared to the provisional tolerable weekly intake levels recommended by WHO and the Joint FAO/WHO Expert Committee on Food Additives. This suggests that heavy metal exposure to patients originating from consumption of traditional medicinal plant preparations is within non health-compromising limits.     

Recent topics in the desymmetrization of meso-diols

The desymmetrization of meso compounds is one of the most effective strategies for asymmetric synthesis. This digest focuses on recent progress in the desymmetrization of meso-diols and their derivatives. The topics discussed here include methods for the enzymatic acylation of meso-diols and the hydrolysis of meso-diesters, acylation, related reactions of meso-diols with organocatalysts and metal catalysts, the oxidation of meso-diols by enzymes, organocatalysts, and metal catalysts, and the desymmetrization of meso-dicarbamates with metal catalysts. The desymmetrization of meso-diols using tandem reactions is also discussed.     

Elsewhere in biology

A selection of interesting papers published last month in Chemistry & Biology’s sister journals, Current Biology and Structure with Folding & Design, chosen and summarized by the staff of Chemistry & Biology.     

Elsewhere in biology

A selection of interesting papers published last month in Chemistry & Biology’s sister journals, Current Biology and Structure with Folding & Design, chosen and summarized by the staff of Chemistry & Biology.     

Avoided level crossings in bound Rydberg states of barium in an electric field

In a CW laser experiment on bound Rydberg states of barium electric-field-induced level crossings were studied. A regular type of avoided crossing of 6snf ³ F ₂ and 6s (n+4)s ³ S ₁ levels (n≈60,M=0) was observed under circumstances where the minimum separation was larger than the linewidth involved. This type of crossing could be reproduced using a diagonalisation procedure of the total energy matrix in the presence of the field. However, in the case of avoided crossings of the 6snf ³ F ₂ and 6s(n+4)p ¹ P ₁ sublevels, where the minimum separation was smaller than the linewidth of the³ F ₂ level, an interference-like profile was recorded. An important feature in the explanation of this interference-like profile turned out to be the broadening of the³ F ₂ level by small field inhomogeneities.     

Polypeptide N-acetylgalactosaminyltransferase-Associated Phenotypes in Mammals

Mucin-type O-glycosylation involves the attachment of glycans to an initial O-linked N-acetylgalactosamine (GalNAc) on serine and threonine residues on proteins. This process in mammals is initiated and regulated by a large family of 20 UDP-GalNAc: polypeptide N-acetylgalactosaminyltransferases (GalNAc-Ts) (EC 2.4.1.41). The enzymes are encoded by a large gene family (GALNTs). Two of these genes, GALNT2 and GALNT3, are known as monogenic autosomal recessive inherited disease genes with well characterized phenotypes, whereas a broad spectrum of phenotypes is associated with the remaining 18 genes. Until recently, the overlapping functionality of the 20 members of the enzyme family has hindered characterizing the specific biological roles of individual enzymes. However, recent evidence suggests that these enzymes do not have full functional redundancy and may serve specific purposes that are found in the different phenotypes described. Here, we summarize the current knowledge of GALNT and associated phenotypes.     

Efficacy of Probiotic Compounds in Relieving Constipation and Their Colonization in Gut Microbiota

A number of studies have confirmed the relationship between constipation and gut microbiota. Additionally, many human and animal experiments have identified probiotics as effectors for the relief of constipation symptoms. In this study, probiotic compounds, including Lactobacillus acidophilus LA11-Onlly, Lacticaseibacillus rhamnosus LR22, Limosilactobacillus reuteri LE16, Lactiplantibacillus plantarum LP-Onlly, and Bifidobacterium animalis subsp. lactis BI516, were administered to mice with loperamide-induced constipation, and the impacts of these strains on constipation-related indicators and gut microbiota were evaluated. The effects of probiotic compounds on constipation relief were associated with various aspects, including gastrointestinal transit rate, number and weight of stools, serum and intestinal gastrointestinal regulatory hormones, and serum cytokines. Some of the probiotic compounds, including Limosilactobacillus reuteri, Lactiplantibacillus plantarum, and Lacticaseibacillus rhamnosus, were found to colonize the intestinal tract. Furthermore, higher dosages promoted the colonization of specific strains. This study yields a new perspective for the clinical use of probiotics to improve constipation symptoms by combining strains with different mechanisms for the alleviation of constipation.     

Porphyrin N-Pincer Pd(II)-Complexes in Water: A Base-Free and Nature-Inspired Protocol for the Oxidative Self-Coupling of Potassium Aryltrifluoroborates in Open-Air

Metalloporphyrins (and porphyrins) are well known as pigments of life in nature, since representatives of this group include chlorophylls (Mg-porphyrins) and heme (Fe-porphyrins). Hence, the construction of chemistry based on these substances can be based on the imitation of biological systems. Inspired by nature, in this article we present the preparation of five different porphyrin, meso-tetraphenylporphyrin (TPP), meso-tetra(p-anisyl)porphyrin (TpAP), tetrasodium meso-tetra(p-sulfonatophenyl)porphyrin (TSTpSPP), meso-tetra(m-hydroxyphenyl)porphyrin (TmHPP), and meso-tetra(m-carboxyphenyl)porphyrin (TmCPP) as well as their N-pincer Pd(II)-complexes such as Pd(II)-meso-tetraphenylporphyrin (PdTPP), Pd(II)-meso-tetra(p-anisyl)porphyrin (PdTpAP), Pd(II)-tetrasodium meso-tetra(p-sulfonatophenyl)porphyrin (PdTSTpSPP), Pd(II)-meso-tetra(m-hydroxyphenyl)porphyrin (PdTmHPP), and Pd(II)-meso-tetra(m-carboxyphenyl)porphyrin (PdTmCPP). These porphyrin N-pincer Pd(II)-complexes were studied and found to be effective in the base-free self-coupling reactions of potassium aryltrifluoroborates (PATFBs) in water at ambient conditions. The catalysts and the products (symmetrical biaryls) were characterized using their spectral data. The high yields of the biaryls, the bio-mimicking conditions, good substrate feasibility, evading the use of base, easy preparation and handling of catalysts, and the application of aqueous media, all make this protocol very attractive from a sustainability and cost-effective standpoint.     

Hyperfine structure measurements in tantalum I using laser saturation spectroscopy in a sputtered vapour

Magnetic hyperfine interaction constants (A factors) and electric quadrupole interaction constants (B factors) have been determined for sixteen levels in tantalum I using the method of saturated absorption spectroscopy in a sputtered vapour. Five of these levels belong to the lowest configuration 5d ³ 6s ² which has been studied previously by other workers, and for one of these levels, thea ⁴ P _5/2 at 9253 cm^?1, our results are new. For the eleven levels belonging to the excited configurations 5d ³ 6s 6p and 5d ² 6s ² 6p our values are the first data reported in the literature.     

Novel method for determining DDT in vapour and particulate phases within contaminated indoor air in a malaria area of South Africa

The organochlorine insecticide DDT (1,1,1-trichloro-2,2-bis(p-chlorophenyl)ethane) is still used for malaria vector control in certain areas of South Africa. The strict Stockholm Convention on Persistent Organic Pollutants (POPs) allows spraying on the inside of traditional dwellings with DDT. In rural villages contaminated dust presents an additional pathway for exposure to DDT. We present a new method for the determination of DDT in indoor air where separate vapour and particulate samples are collected in a single step with a denuder configuration of a multi-channel open tubular silicone rubber (polydimethylsiloxane (PDMS)) trap combined with a micro quartz fibre filter. The multi-channel PDMS trap section of the denuder concentrates vapour phase insecticide whereas particle associated insecticide is transferred downstream where it is collected on a micro-fibre filter followed by a second multi-channel PDMS trap to capture the blow-off from the filter. The multi-channel PDMS trap and filter combination are designed to fit a commercial thermal desorber for direct introduction of samples into a GC–MS. The technique is solvent-free. Analyte extraction and sample clean-up is not required. Two fractions, vapour phase and particulate phase p,p′-DDT, o,p′-DDT; p,p′-DDD, o,p′-DDD; p,p′-DDE and o,p′-DDE in 4 L contaminated indoor air, were each quantitatively analysed by GC–MS using isotopically labelled ring substituted ¹³C₁₂ – p,p′-DDT as an internal standard. Limits of detection were 0.07–0.35 ng m⁻³ for p,p′-DDT, o,p′-DDT, p,p′-DDD, o,p′-DDD, p,p′-DDE and o,p′-DDE. Ratios of airborne p,p′-DDD/p,p′-DDT and of o,p′-DDT/p,p′-DDT are unusual and do not match the ideal certified ingredient composition required of commercial DDT. Results suggest that the DDT products used for indoor residual spraying (IRS) prior to, and during 2007, may have been compromised with regards to insecticidal efficacy, demonstrating the power of this new environmental forensics tool.     

Dipolar relaxations in an epoxy-amine system

Dipolar relaxations in a reactive epoxy-amine system based on diglycidyl ether of bisphenol A with 4,4^′-diaminodiphenylsulfone were studied with the Havriliak-Negami function. The system was cured isothermally at 140 °C using simultaneous kinetic and microdielectric studies.The relaxation time was calculated from the frequency f_max of the peak of the loss factor ε^′′ versus frequency f. A linear relation exists between the logarithm of the relaxation time τ and the glass transition temperature T_g. Then, logτ follows the Di Benedetto equation revisited by Pascault and Williams allowing the prediction of the relaxation time τ during cure.The unrelaxed permittivity at high frequency ε_u, the relaxed or static permittivity ε_s and the skewness parameter β were found independent on the conversion or the curing time. The distribution parameter α decreases as curing time t increases. The difficulty of orientation of dipoles in the electric field due to vitrification is responsible of these behaviours.     

Calorimetric effects of short-range orientational order in solutions of benzene or n-alkylbenzenes in n-alkanes

A Picker flow microcalorimeter was used to determine molar excess heat capacities, C^E_p, at 298.15 K, as function of concentration, for the eleven liquid mixtures: benzene+n-tetradecane; toluene+n-heptane, and +n-tetradecane; ethylbenzene+n-heptane, +n-decane, +n-dodecane; and +n-tetradecane; n-propylbenzene +n-heptane, and +n-tetradecane; n-butylbenzene+n-heptane, and +n-tetradecane. In addition, molar excess volumes, V^E, at 298.15 K, were obtained for each of these systems (except benzene+n-tetradecane) and for toluene+n-hexane. The excess volumes which are generally negative with a short alkane, increase and become positive with increasing chain length of the alkane. The excess heat capacities are negative in all cases. The absolute ¦C^E_p¦ increased with increasing chain length of the n-alkane. A formal interchange parameter, C_p12, is calculated and its dependence on n-alkane chain length is discussed in terms of molecular orientations.