Bioelectronic Interface Connecting Reversible Logic Gates Based on Enzyme and DNA Reactions

It is believed that connecting biomolecular computation elements in complex networks of communicating molecules may eventually lead to a biocomputer that can be used for diagnostics and/or the cure of physiological and genetic disorders. Here, a bioelectronic interface based on biomolecule‐modified electrodes has been designed to bridge reversible enzymatic logic gates with reversible DNA‐based logic gates. The enzyme‐based Fredkin gate with three input and three output signals was connected to the DNA‐based Feynman gate with two input and two output signals—both representing logically reversible computing elements. In the reversible Fredkin gate, the routing of two data signals between two output channels was controlled by the control signal (third channel). The two data output signals generated by the Fredkin gate were directed toward two electrochemical flow cells, responding to the output signals by releasing DNA molecules that serve as the input signals for the next Feynman logic gate based on the DNA reacting cascade, producing, in turn, two final output signals. The Feynman gate operated as the controlled NOT gate (CNOT), where one of the input channels controlled a NOT operation on another channel. Both logic gates represented a highly sophisticated combination of input‐controlled signal‐routing logic operations, resulting in redirecting chemical signals in different channels and performing orchestrated computing processes. The biomolecular reaction cascade responsible for the signal processing was realized by moving the solution from one reacting cell to another, including the reacting flow cells and electrochemical flow cells, which were organized in a specific network mimicking electronic computing circuitries. The designed system represents the first example of high complexity biocomputing processes integrating enzyme and DNA reactions and performing logically reversible signal processing.     

Chemiluminescent Logic Gates Based on Functionalized Gold Nanoparticles/Graphene Oxide Nanocomposites

Label‐free logic gates (AND, OR, and INHIBIT) based on chemiluminescence (CL) as new optical readout signal have been developed by taking advantage of the unique CL activity of luminol‐ and lucigenin‐functionalized gold nanoparticles/graphene oxide (luminol‐lucigenin/AuNPs/GO) nanocomposites. It was found that Fe²⁺ ions could induce the CL emission of luminol‐lucigenin/AuNPs/GO nanocomposites in alkaline solution. On this basis, by using Fe²⁺ ions and NaOH as the inputs and the CL signal as the output, an AND logic gate was fabricated. When the initial reaction system contained luminol‐lucigenin/AuNPs/GO nanocomposites and NaOH, either Fe²⁺ ions or Ag⁺ ions could react with the luminol‐lucigenin/AuNPs/GO nanocomposites to produce a strong CL emission. This result was used to design an OR logic gate using Fe²⁺ ions and Ag⁺ ions as the inputs and CL signal as the output. Moreover, two INHIBIT logic gates for Fe²⁺ and Ag⁺ were also developed using by NaClO and L ‐cysteine as their CL inhibitors, respectively. Furthermore, the proposed logic gates were successfully used to detect Fe²⁺, Ag⁺, and L ‐cysteine, respectively. The developed logic gates may find future applications in sensing, clinical diagnostics, and environmental monitoring.     

Reversible Logic Gates Based on Enzyme‐Biocatalyzed Reactions and Realized in Flow Cells: A Modular Approach

Reversible logic gates, such as the double Feynman gate, Toffoli gate and Peres gate, with 3‐input/3‐output channels are realized using reactions biocatalyzed with enzymes and performed in flow systems. The flow devices are constructed using a modular approach, where each flow cell is modified with one enzyme that biocatalyzes one chemical reaction. The multi‐step processes mimicking the reversible logic gates are organized by combining the biocatalytic cells in different networks. This work emphasizes logical but not physical reversibility of the constructed systems. Their advantages and disadvantages are discussed and potential use in biosensing systems, rather than in computing devices, is suggested.     

Rhodamine-Appended Bipyridine: XOR and OR Logic Operations Integrated in an Example of Controlled Metal Migration

A new bipyridyl derivative 1 bearing rhodamine B as visible fluorophore was designed, synthesized and characterized as a fluorescent and colorimetric sensor for metal ions. Interaction with Cu²⁺, Zn²⁺, Cd²⁺, Hg⁺, and Hg²⁺ ions was followed by UV/Vis and emission spectroscopy. Upon addition of these metal ions, different colorimetric and fluorescent responses were observed. “Off-on-off” (Cu²⁺, Zn²⁺, and Hg²⁺) and “off-on” (Hg⁺ and Cd²⁺) systems were obtained. Probe 1 was explored to mimic XOR and OR logic operations for the simultaneous detection of Hg⁺–Cu²⁺ and Hg⁺–Zn²⁺ pairs, respectively. DFT calculations were also performed to gain insight into the lowest-energy gas-phase conformation of free receptor 1 as well as the atomistic details of the coordination modes of the various metal ions.     

INHIBIT‐Inspired Two‐Output DNA Logic Gates Based on Surface‐Enhanced Raman Scattering

Herein, we presented a novel logic gate based on an INHIBITION gate that performs parallel readouts. Logic gates performing INHIBITION and YES/OR were constructed using surface‐enhanced Raman scattering as optical outputs for the first time. The strategy allowed for simultaneous reading of outputs in one tube. The applicability of this strategy has been successfully exemplified in the construction of half‐adder using the two‐output logic gates as reporting gates. This reporting strategy provides additional design flexibility for dynamic DNA devices.     

基于色胺酮衍生物的阴离子探针和分子逻辑门

通过色胺酮与苯肼反应生成一种新型的腙类化合物.在该化合物的DMF溶液中,用含有不同阴离子的四丁基铵盐测试了其对阴离子的识别能力.实验结果表明,加入F-,AcO-和H2PO-4后,溶液由黄色立即变为橙色,而加入Cl-,Br-,I-,ClO-4,NO-3和HSO-4离子则无变化.通过核磁共振波谱证实了探针的识别机制,并设计了一个四输入的分子逻辑门.     

Controlled Logic Gates—Switch Gate and Fredkin Gate Based on Enzyme‐Biocatalyzed Reactions Realized in Flow Cells

Controlled logic gates, where the logic operations on the Data inputs are performed in the way determined by the Control signal, were designed in a chemical fashion. Specifically, the systems where the Data output signals directed to various output channels depending on the logic value of the Control input signal have been designed based on enzyme biocatalyzed reactions performed in a multi‐cell flow system. In the Switch gate one Data signal was directed to one of two possible output channels depending on the logic value of the Control input signal. In the reversible Fredkin gate the routing of two Data signals between two output channels is controlled by the third Control signal. The flow devices were created using a network of flow cells, each modified with one enzyme that biocatalyzed one chemical reaction. The enzymatic cascade was realized by moving the solution from one reacting cell to another which were organized in a specific network. The modular design of the enzyme‐based systems realized in the flow device allowed easy reconfiguration of the logic system, thus allowing simple extension of the logic operation from the 2‐input/3‐output channels in the Switch gate to the 3‐input/3‐output channels in the Fredkin gate. Further increase of the system complexity for realization of various logic processes is feasible with the use of the flow cell modular design.     

Hetero‐oligophenylene‐Based AIEE Material as a Multiple Probe for Biomolecules and Metal Ions to Construct Logic Circuits: Application in Bioelectronics and Chemionics

New hetero‐oligophenylene derivative ( 2 ) was synthesized which exhibits aggregation‐induced emission enhancement (AIEE) in H₂O/THF (80:20). The aggregates serve as a biological probe for three different proteins, that is bovine serum albumin (BSA), cytochrome c, and lysozyme, and DNA in contrasting modes. Further, among 29 metal ions tested, the contrasting fluorescence behavior of aggregates of 2 is observed with only Pb²⁺ and Pd²⁺ ions. Multiple output logic circuits based upon the fluorescence behavior between BSA and cytochrome c and between Pb²⁺ and Pd²⁺ ions are constructed.     

Acid/Base Switching of the Tautomerism and Conformation of a Dioxoporphyrin for Integrated Binary Subtraction

Compared with most of the reported logic devices based on the supramolecular approach, systems based on individual molecules can avoid challenging construction requirements. Herein, a novel dioxoporphyrin DPH₂₂ was synthesized and two of its tautomers were characterized by single‐crystal X‐ray diffraction studies. Compound DPH₂₂ exhibits multichannel controllable stepwise tautomerization, protonation, and deprotonation processes through interactions with H⁺ and F^? ions. By using the addition of H⁺ and F^? ions as inputs and UV/Vis absorption values at λ=412, 510, 562, and 603 nm as outputs, the controlled tautomerism of DPH₂₂ has been successfully used for the construction of an integrated molecular level half‐subtractor and comparator. In addition, this acid/base‐switched tautomerism is reversible, thus endowing the system with ease of reset and recycling; consequently, there is no need to modulate complicated intermolecular interactions and electron‐/charge‐transfer processes.     

Switching of Single‐Molecule Magnetic Properties of TbIII–Porphyrin Double‐Decker Complexes and Observation of Their Supramolecular Structures on a Carbon Surface

Double‐decker complexes based on single‐molecule magnets (SMMs) are a class of highly promising molecules for applications in molecular spintronics, wherein control of both the ligand oxidative states and the 2D supramolecular structure on carbon materials is of great importance. This study focuses on the synthesis and study of 2,3,7,8,12,13,17,18‐octaethylporphyrin (OEP)–Tb^III double‐decker complexes with different electronic structures comprising protonated, anionic, and radical forms. Magnetic susceptibility measurements revealed that only the anionic and radical forms of the OEP–Tb^III double‐decker complexes exhibited SMM properties. The barrier heights for magnetic moment reversal were estimated to be 207 and 215 cm^?1 for the anionic and radical forms, respectively. Scanning tunneling microscopy (STM) investigations revealed that these OEP–Tb^III complexes form well‐ordered monolayers upon simple dropcasting from dilute dichloromethane solutions. All three complexes form an isomorphic pseudo‐hexagonal 2D pattern, regardless of the differences in the electronic structures of their porphyrin–Tb cores. This finding is of interest for SMM technology as ultrathin films of these materials undergoing chemical transformations will not require any detrimental reorganization. Finally, we demonstrate self‐assembly of the protonated 5,15‐bisdodecylporphyrin (BDP)–Tb^III double‐decker complex as an example of successful supramolecular design to achieve controlled alignment of SMM‐active sites.     

Rational design of a colorimetric and ratiometric fluorescent chemosensor based on intramolecular charge transfer (ICT)

A simple colorimetric and ratiometric fluorescent anion sensor 1, 3,6-dichloro-1,8-dinitrocarbazole, was rationally designed and synthesized on basis of the mechanism of intramolecular charge transfer (ICT). In DMSO solutions of 1, the presence of AcO⁻, F⁻ and H₂PO₄⁻ gave birth to the formation of a 2:1 host-to-guest complex, which was synchronously accompanied by a ‘naked-eye’ color change from light yellow to purple, a red-shift of the absorption spectrum and a blue-shift of the emission spectrum.     

Two‐Photon Absorption and Time‐Resolved Stimulated Emission Depletion Spectroscopy of a New Fluorenyl Derivative

The synthesis, comprehensive linear photophysical characterization, two‐photon absorption (2PA), steady‐state and time‐resolved stimulated emission depletion properties of a new fluorene derivative, (E)‐1‐(2‐(di‐p‐tolylamino)‐9,9‐diethyl‐9H‐fluoren‐7‐yl)‐3‐(thiophen‐2‐yl)prop‐2‐en‐1‐one ( 1 ), are reported. The primary linear spectral properties, including excitation anisotropy, fluorescence lifetimes, and photostability, were investigated in a number of aprotic solvents at room temperature. The degenerate 2PA spectra of 1 were obtained with open‐aperture Z‐scan and two‐photon induced fluorescence methods, using a 1 kHz femtosecond laser system, and maximum 2PA cross‐sections of ～400–600 GM were obtained. The nature of the electronic absorption processes in 1 was investigated by DFT‐based quantum chemical methods implemented in the Gaussian 09 program. The one‐ and two‐photon stimulated emission spectra of 1 were measured over a broad spectral range using a femtosecond pump–probe‐based fluorescence quenching technique, while a new methodology for time‐resolved fluorescence emission spectroscopy is proposed. An effective application of 1 in fluorescence bioimaging was demonstrated by means of one‐ and two‐photon fluorescence microscopy images of HCT 116 cells containing dye encapsulated micelles.     

以热力学和动力学性质差异连续高敏测定磷和砷及其比较研究

提出以非离子表面活性剂使磷钼酸、砷钼酸－孔雀绿缔合物在水相增敏、增溶、增稳并根据磷（Ⅴ）、砷（Ⅴ）的氧化性差异及形成上述缔合物速率差异，分别建立了以热力学和动力学性质差异在水相不经分离、连续、简便、高敏测两组分的光度法，并对此两法进行了比较研究。摩尔吸光系数ε６５０分别为１．１１×１０５（磷）和１．２２×１０５（砷）Ｌ·ｍｏｌ－１·ｃｍ－１；服从比尔定律的浓度范围相应为０～０．２４和０～０．４８μｇ／ｍＬ。已成功地用于测定四种钢样（相对误差：热力学法皆不大于±５％，动力学法通常皆不大于±１０％）和两种茶样（回收率：热力学法为９８～１０２％，动力学法为９３～１１１％）。     

Highly Sensitive Membrane Electrode Based on a Copper(II)-bis(N-4-Methylphenyl-Salicyldenaminato) Complex for the Determination of Chromate

A highly sensitive polyvinyl chloride (PVC) membrane electrode, based on copper(II)-bis(N-4-methylphenyl-salicyldenaminato) complex, (CuL₂), as a carrier was reported for the determination of chromate ion. The influence of membrane composition, pH, and possible interfering anions on the response of the ion selective electrode was investigated. The sensor exhibited a Nernstian slope of 29.7 mV per decade when the chromate concentration was varied between 2.0 × 10^?7–1.50 × 10^?2 M in a wide pH range (6.0 to 9.0). The detection limit of the ion selective electrode was 9.2 × 10^?8 M. The proposed sensor was used for at least 4 months without any considerable divergence in potential. It was applied as indicator electrode in potentiometric titration of chromate ion with Pb²⁺ and Tl⁺.     

PPb Level Monitoring of Dy(III) Ions by a Highly Sensitive and Selective Dy(III) Sensor Based on a New Asymmetrical Schiff's Base

Abstract

A Dy(III) ion‐selective membrane sensor has been fabricated from polyvinyl chloride (PVC) matrix membrane containing a new asymmetrical Schiff's base [(E)‐N‐(2‐hydroxybenzylidene)benzohydraide] or BBH as a neutral carrier, sodium tetraphenyl borate (NaTPB) as an anionic excluder and nitrobenzene (NB) as a plasticizing solvent mediator. The membrane sensor displays linear potential response in the concentration range of 1.0×10^?2–1.0×10^?6 M of Dy(III). The electrode exhibits a nice Nernstian slope of 20.1±0.8 mV/decade in the pH range of 3.0–8.0. The sensor has a relatively short response time in whole concentration ranges (<20 s). The detection limit of the proposed sensor is 8.0×10^?7 M (～128 ng/mL), and it can be used over a period of six weeks. The selectivity of the proposed sensor with respect to other cations, (alkali, alkaline earth, transition and heavy metal ions) and especially lanthanid ions, is excellent. The practical utility of the sensor has been demonstrated by using it as an indicator electrode in the potentiometric titration of Dy(III) with EDTA.     

Design,Synthesis and Recognition Properties of a New Acetate Ion Receptor Based on Shiff-base Derivative

A simple colorimetric acetate ion receptor based on 3-methoxysalicylaldehyde-4'-nitrophenyl-hydrazone was synthesized in an ethanol solution through one step,and characterized by 1H NMR and elemental analyses.Its anion-binding ability was examined by UV-Vis absorption spectroscopy in DMSO(dimethyl sulfoxide).The result shows that the compound has a high affinity for and a high selectivity toward acetate ions,and also an advantage of 'naked-eye' recognition of color changing from yellow to purple.