Spatiotemporal Kinetics in Solution Studied by Time‐Resolved X‐Ray Liquidography (Solution Scattering)

Information about temporally varying molecular structure during chemical processes is crucial for understanding the mechanism and function of a chemical reaction. Using ultrashort optical pulses to trigger a reaction in solution and using time‐resolved X‐ray diffraction (scattering) to interrogate the structural changes in the molecules, time‐resolved X‐ray liquidography (TRXL) is a direct tool for probing structural dynamics for chemical reactions in solution. TRXL can provide direct structural information that is difficult to extract from ultrafast optical spectroscopy, such as the time dependence of bond lengths and angles of all molecular species including short‐lived intermediates over a wide range of times, from picoseconds to milliseconds. TRXL elegantly complements ultrafast optical spectroscopy because the diffraction signals are sensitive to all chemical species simultaneously and the diffraction signal from each chemical species can be quantitatively calculated from its three‐dimensional atomic coordinates and compared with experimental TRXL data. Since X‐rays scatter from all the atoms in the solution sample, solutes as well as the solvent, the analysis of TRXL data can provide the temporal behavior of the solvent as well as the structural progression of all the solute molecules in all the reaction pathways, thus providing a global picture of the reactions and accurate branching ratios between multiple reaction pathways. The arrangement of the solvent around the solute molecule can also be extracted. This review summarizes recent developments in TRXL, including technical innovations in synchrotron beamlines and theoretical analysis of TRXL data, as well as several examples from simple molecules to an organometallic complex, nanoparticles, and proteins in solution. Future potential applications of TRXL in femtosecond studies and biologically relevant molecules are also briefly mentioned.     

Hollow and Yolk‐Shell Iron Oxide Nanostructures on Few‐Layer Graphene in Li‐Ion Batteries

We report a simple and template‐free strategy for the synthesis of hollow and yolk‐shell iron oxide (FeO_x) nanostructures sandwiched between few‐layer graphene (FLG) sheets. The morphology and microstructure of this material are characterized in detail by X‐ray diffraction, X‐ray absorption near‐edge structure, X‐ray photoelectron spectroscopy, Raman spectroscopy, scanning and transmission electron microscopy. Its properties are evaluated as negative electrode material for Li‐ion batteries and compared with those of solid FeO_x/FLG and two commercial iron oxides. In all cases, the content of carbon in the electrode has a great influence on the performance. The use of pristine FLG improves the capacity retention and further enhancement is achieved with the hollow structure. For a low carbon loading of 18 wt. %, the presence of metallic iron in the hollow and yolk‐shell FeO_x/FLG composite significantly enhances the capacity retention, albeit with a relatively lower initial reversible capacity, retaining above 97 % after 120 cycles at 1000 mA g^?1 in the voltage range of 0.1–3.0 V.     

Molecular Suction Pads: Self‐Assembled Monolayers of Subphthalocyaninatoboron Complexes on Gold

Subphthalocyaninatoboron complexes with six long‐chain alkylthio substituents in their periphery are applicable for the formation of self‐assembled monolayers (SAMs) on gold. Such films are prepared from solution with the axially chlorido‐substituted derivatives and characterised by near‐edge X‐ray absorption fine structure (NEXAFS) spectroscopy, X‐ray photoelectron spectroscopy (XPS) and time‐of‐flight secondary ion mass spectrometry (ToF‐SIMS). The results are in accord with the formation of SAMs assembled by the chemisorption of both covalently bound thiolate‐type as well as coordinatively bound thioether units. The adsorbate molecules adopt an essentially flat adsorption geometry on the substrate, resembling a suction pad on a surface.     

In Situ Synchrotron Radiation X‐Ray Microspectroscopy of Polymer Microcontainers

Direct, real‐time analytical techniques that provide high‐resolution information on the chemical composition and submicrometer structure of various polymer micro‐ and nanoparticles are in high demand in a range of life science disciplines. Synchrotron‐based scanning transmission X‐ray microspectroscopy (STXM) combines both local‐spot chemical information (assessed via near‐edge X‐ray absorption fine structure spectroscopy) and imaging with resolution of several tens of nanometers, and thus can yield new insights into the nanoscale properties of these materials. Furthermore, this method allows in situ examination of soft‐matter samples in aqueous/gaseous environments and under external stimuli, such as temperature, pressure, ultrasound, and light irradiation. This Minireview highlights some recent progress in the application of the STXM technique to study the temperature‐dependent behavior of polymer core–shell microcapsules and to characterize the physicochemical properties of the supporting shells of gas‐filled microbubbles in their natural hydrated state.     

Layer structure estimation of three‐dimensional crystal and two‐dimensional molecular film for fluorinated comb copolymers

Comb copolymers containing both hydrogenated and fluorinated side‐chains were prepared by copolymerization using acrylic or methacrylic monomers in several ratios. The crystal structures of these copolymers and layer structures of their organized molecular films were investigated by wide‐angle X‐ray diffraction (WAXD), small‐angle X‐ray scattering (SAXS), and out‐of plane X‐ray diffraction. Further, to selectively estimate the regularity of shorter fluorocarbon side‐chains, organized molecular films of copolymers were investigated by polarized near‐edge X‐ray adsorption fine structure (NEXAFS) spectroscopy. From the results of these measurements, it was inferred that these copolymers formed highly ordered layer structures, and a long spacing was predominantly determined by the arrangement of hydrogenated side‐chains, except in copolymers having extremely high fluorocarbon contents. In the case of the organized molecular films, the fluorinated side‐chains of methacrylate copolymers cannot form a highly ordered arrangement, whereas those of acrylate copolymers were oriented on monolayers. However, in both cases, the hydrogenated side‐chains predominantly formed layer structures in the organized films, and the fluorinated side‐chains did not contribute to the formation of the layer structures. © 2008 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 46: 534–546, 2008     

Microsecond X‐ray Absorption Spectroscopy Identification of CoI Intermediates in Cobaloxime‐Catalyzed Hydrogen Evolution

Rational development of efficient photocatalytic systems for hydrogen production requires understanding the catalytic mechanism and detailed information about the structure of intermediates in the catalytic cycle. We demonstrate how time‐resolved X‐ray absorption spectroscopy in the microsecond time range can be used to identify such intermediates and to determine their local geometric structure. This method was used to obtain the solution structure of the Co^I intermediate of cobaloxime, which is a non‐noble metal catalyst for solar hydrogen production from water. Distances between cobalt and the nearest ligands including two solvent molecules and displacement of the cobalt atom out of plane formed by the planar ligands have been determined. Combining in situ X‐ray absorption and UV/Vis data, we demonstrate how slight modification of the catalyst structure can lead to the formation of a catalytically inactive Co^I state under similar conditions. Possible deactivation mechanisms are discussed.     

Spectroscopic Characteristics of Differently Produced Single‐Walled Carbon Nanotubes

Single‐walled carbon nanotubes (SWNTs) synthesized with different methods are investigated by using multiple characterization techniques, including Raman scattering, optical absorption, and X‐ray absorption near edge structure, along with X‐ray photoemission by following the total valence bands and C 1s core‐level spectra. Four different SWNT materials (produced by arc discharge, HiPco, laser ablation, and CoMoCat methods) contain nanotubes with diameters ranging from 0.7 to 2.8 nm. The diameter distribution and the composition of metallic and semiconducting tubes of the SWNT materials are strongly affected by the synthesis method. Similar sp² hybridization of carbon in the oxygenated SWNT structure can be found, but different surface functionalities are introduced while the tubes are processed. All the SWNTs demonstrate stronger plasmon resonance excitations and lower electron binding energy than graphite and multiwalled carbon nanotubes. These SWNT materials also exhibit different valence‐band X‐ray photoemission features, which are considerably affected by the nanotube diameter distribution and metallic/semiconducting composition.     

Molecular orientation and composition at the surface of spin‐coated polyfluorene:Fullerene blend films

The surface composition in spin‐coated films of polyfluorene:fullerene blends was determined quantitatively by near‐edge X‐ray absorption fine structure (NEXAFS) spectroscopy. By comparing partial and total electron yield spectra, we found vertical compositional differences in the surface region. Furthermore, the orientation of the polymer chains was investigated by variable‐angle NEXAFS. Blend films of poly[(9,9‐dioctylfluorenyl‐2,7‐diyl)‐co‐5,5‐(4′,7′‐di‐2‐thienyl‐2′,1′,3′‐benzothiadiazole] with [6,6]‐phenyl‐C61‐butyric acid methyl ester in two different blend ratios were studied. Results showed polymer enrichment of the surfaces for films with a polymer:fullerene weight ratio of 20:80 and of 50:50, spin‐coated from both chlorobenzene and chloroform solutions. The angular dependence of the NEXAFS spectra of the pure polymer films showed a preferential plane‐on orientation, which was slightly stronger in the subsurface region than at the surface. In blend films, this orientational preference was less pronounced and the difference between surface and subsurface vanished. © 2012 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2013     

Small‐angle X‐ray scattering from poly(methylmethacrylate) in aqueous solutions of t‐butyl alcohol

Segment‐segment interaction of poly(methylmethacrylate) in t‐butyl alcohol‐water mixtures in poor solvent regime was studied. From the small‐angle X‐ray scattering measurements of semidilute solution range, the binary and ternary cluster integrals of polymer segments were determined from concentration dependence of the correlation length at various temperatures just above the upper critical solution temperature. We have calculated the contributions of the segment–segment interaction to the entropy and enthalpy from the measured temperature dependence of these interaction parameters and found that both quantities are negative and decrease with decreasing t‐butyl alcohol content. FT‐IR absorption peak of carbonyl group of poly(methylmethacrylate) shifts to the lower frequency with increasing water content. The implications of these findings are discussed. © 1999 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 37: 2195–2199, 1999     

Synthesis,solid‐state,and charge‐transport properties of conjugated polythiophene‐S,S‐dioxides

An alkylated semiconducting polymer comprising alternating bithiophene‐[all]‐S,S‐dioxide and aromatic monothiophene units in the polymer backbone was synthesized with the intent of modifying the energy gap and lowest unoccupied molecular orbital for use as a stable n‐type semiconductor. Films spun from this semiconducting polymer were characterized utilizing X‐ray scattering, near edge X‐ray absorption fine structure spectroscopy, ultraviolet photoelectron spectroscopy, and thin‐film field effect transistors to determine how oxidation of the thiophene ring systems impacts the structural and electronic properties of the polymer. The thiophene‐S,S‐dioxide polymers have lower optical and electrical band gaps than corresponding thiophene polymers. X‐ray scattering results indicate that the polymers are well ordered with the π–π stacking distances increased by 0.4 Å relative to analogous thiophene polymers. The electrical stability of these polymers is poor in transistors with a drop in the field effect mobility by approximately one order of magnitude upon addition of just 5% of the thiophene‐S,S‐dioxide unit in a copolymer with thiophene. © 2012 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2013     

Visualization of the Heterogeneity of Cerium Oxidation States in Single Pt/Ce2Zr2Ox Catalyst Particles by Nano‐XAFS

The cerium oxidation states in single catalyst particles of Pt/Ce₂Zr₂O_x (x=7 to 8) were investigated by spatially resolved nano X‐ray absorption fine structure (nano‐XAFS) using an X‐ray nanobeam. Differences in the distribution of the Ce oxidation states between Pt/Ce₂Zr₂O_x single particles of different oxygen compositions x were visualized in the obtained two‐dimensional X‐ray fluorescent (XRF) mapping images and the Ce L_III‐edge nano X‐ray absorption near‐edge structure (nano‐XANES) spectra.     

Spin‐Crossover Complex on Au(111): Structural and Electronic Differences Between Mono‐ and Multilayers

Submono‐, mono‐ and multilayers of the Fe(II) spin‐crossover (SCO) complex [Fe(bpz)₂(phen)] (bpz=dihydrobis(pyrazolyl)borate, phen=1,10‐phenanthroline) have beenprepared by vacuum deposition on Au(111) substrates and investigated with near edge X‐ray absorption fine structure (NEXAFS) spectroscopy and scanning tunneling microscopy (STM). As evidenced by NEXAFS, molecules of the second layer exhibit a thermal spin crossover transition, although with a more gradual characteristics than in the bulk. For mono‐ and submonolayers of [Fe(bpz)₂(phen)] deposited on Au(111) substrates at room temperature both NEXAFS and STM indicate a dissociation of [Fe(bpz)₂(phen)] on Au(111) into four‐coordinate complexes, [Fe(bpz)₂], and phen molecules. Keeping the gold substrate at elevated temperatures ordered monolayers of intact molecules of [Fe(bpz)₂(phen)] are formed which can be spin‐switched by electron‐induced excited spin‐state trapping (ELIESST).     

Fe K‐Edge X‐ray Absorption Fine Structure Determination of γ‐Al2O3‐Supported Iron‐Oxide Species

The structure of FeO_x species supported on γ‐Al₂O₃ was investigated by using Fe K‐edge X‐ray absorption fine structure (XAFS) and X‐ray diffraction (XRD) measurements. The samples were prepared through the impregnation of iron nitrate on Al₂O₃ and co‐gelation of aluminum and iron sulfates. The dependence of the XRD patterns on Fe loading revealed the formation of α‐Fe₂O₃ particles at an Fe loading of above 10 wt %, whereas the formation of iron‐oxide crystals was not observed at Fe loadings of less than 9.0 wt %. The Fe K‐edge XAFS was characterized by a clear pre‐edge peak, which indicated that the Fe?O coordination structure deviates from central symmetry and that the degree of Fe?O?Fe bond formation is significantly lower than that in bulk samples at low Fe loading (<9.0 wt %). Fe K‐edge extended XAFS oscillations of the samples with low Fe loadings were explained by assuming an isolated iron‐oxide monomer on the γ‐Al₂O₃ surface.     

The Molecular Pathway to ZIF‐7 Microrods Revealed by In Situ Time‐Resolved Small‐ and Wide‐Angle X‐Ray Scattering,Quick‐Scanning Extended X‐Ray Absorption Spectroscopy,and DFT Calculations

We present an in situ small‐ and wide‐angle X‐ray scattering (SAXS/WAXS) and quick‐scanning extended X‐ray absorption fine‐structure (QEXAFS) spectroscopy study on the crystallization of the metal–organic framework ZIF‐7. In combination with DFT calculations, the self‐assembly and growth of ZIF‐7 microrods together with the chemical function of the crystal growth modulator (diethylamine) are revealed at all relevant length scales, from the atomic to the full crystal size.     

Structures of X 34‐nylons in chain‐folded lamellae and gel‐spun fibers

Structural studies and morphological features of a new family of linear, aliphatic even–even, X 34‐nylons, with X = 2, 4, 6, 8, 10, and 12, are investigated with X‐ray diffraction and electron microscopy. Solution‐grown crystals were obtained by isothermal crystallization from N,N‐dimethylformamide solutions. The thickness of lamellar‐like crystals was orders of magnitude less than the chain lengths of the polymer samples used, implying that the chains fold to form chain‐folded lamellae. The results bear a close resemblance, with the noticeable exception of 2 34‐nylon, to those reported for nylon 6 6 and other even–even nylon chain‐folded lamellar crystals. The basic structure of the straight‐stem lamellar core is similar to that of the classic nylon 6 6 triclinic α structure, and the chains tilt ≈42° relative to the lamellar normal. In the case of 2 34‐nylon, the structure resembles the 2 Y nylon series, and the chain tilt angle reduces to 36.6°. These combined results suggest that, even with a relatively low frequency of amide units along the backbone of these molecules, hydrogen bonding is still the dominant element in controlling the behavior, structure, and properties of these polymers. In addition, gels were prepared in concentrated sulfuric acid, and gel‐spun fibers were studied using X‐ray diffraction. The data are interpreted in terms of a modified nylon triclinic α structure that bears a resemblance to the structure of even–even nylons at elevated temperatures. © 2002 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 40: 2685–2692, 2002     

Catching an Entatic State—A Pair of Copper Complexes

The structures of two types of guanidine–quinoline copper complexes have been investigated by single‐crystal X‐ray crystallography, K‐edge X‐ray absorption spectroscopy (XAS), resonance Raman and UV/Vis spectroscopy, cyclic voltammetry, and density functional theory (DFT). Independent of the oxidation state, the two structures, which are virtually identical for solids and complexes in solution, resemble each other strongly and are connected by a reversible electron transfer at 0.33 V. By resonant excitation of the two entatic copper complexes, the transition state of the electron transfer is accessible through vibrational modes, which are coupled to metal–ligand charge transfer (MLCT) and ligand–metal charge transfer (LMCT) states.     

In Situ Solid‐State Reactions Monitored by X‐ray Absorption Spectroscopy: Temperature‐Induced Proton Transfer Leads to Chemical Shifts

The dramatic colour and phase alteration with the solid‐state, temperature‐dependent reaction between squaric acid and 4,4′‐bipyridine has been probed in situ with X‐ray absorption spectroscopy. The electronic and chemical sensitivity to the local atomic environment through chemical shifts in the near‐edge X‐ray absorption fine structure (NEXAFS) revealed proton transfer from the acid to the bipyridine base through the change in nitrogen protonation state in the high‐temperature form. Direct detection of proton transfer coupled with structural analysis elucidates the nature of the solid‐state process, with intermolecular proton transfer occurring along an acid‐base chain followed by a domino effect to the subsequent acid‐base chains, leading to the rapid migration along the length of the crystal. NEXAFS thereby conveys the ability to monitor the nature of solid‐state chemical reactions in situ, without the need for a priori information or long‐range order.     

Resonant soft x‐ray scattering and reflectivity study of the phase‐separated structure of thin poly(styrene‐b‐methyl methacrylate) films

Combined soft X‐ray scattering and reflectometry techniques promise analysis of polymer thin film domain structure and composition without resorting to chemical modification or isotopic labeling. This work explores the capabilities of these techniques in polymer films of poly(styrene‐b‐methyl methacrylate) (P(S‐b‐MMA)). The results demonstrate that the techniques give detailed information on the domain structure of thin films using well‐known modeling procedures. Discrepancies were noted between the X‐ray optical parameters that are needed to best fit the reflectivity data to the model and the expected parameters. The sources of these discrepancies are discussed in terms of instrument configuration parameters, sample attributes, and, particularly, anisotropy of the chromophore parameters. The results show that fitting the soft X‐ray reflectivity data is much more sensitive to these X‐ray optical parameters than the soft X‐ray scattering data. Nevertheless, fits to both types of data yield quantitative measures of the polymer film's lamellar morphology that are consistent with each other and with literature values. © 2012 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2013     

Receptor‐Bound Conformation of Cilengitide Better Represented by Its Solution‐State Structure than the Solid‐State Structure

The X‐ray crystal and NMR spectroscopic structures of the peptide drug candidate Cilengitide (cyclo(RGDf(NMe)Val)) in various solvents are obtained and compared in addition to the integrin receptor bound conformation. The NMR‐based solution structures exhibit conformations closely resembling the X‐ray structure of Cilengitide bound to the head group of integrin αvβ3. In contrast, the structure of pure Cilengitide recrystallized from methanol reveals a different conformation controlled by the lattice forces of the crystal packing. Molecular modeling studies of the various ligand structures docked to the αvβ3 integrin revealed that utilization of the solid‐state conformation of Cilengitide leads—unlike the solution‐based structures—to a mismatch of the ligand–receptor interactions compared with the experimentally determined structure of the protein–ligand complex. Such discrepancies between solution and crystal conformations of ligands can be misleading during the structure‐based lead optimization process and should thus be taken carefully into account in ligand orientated drug design.     

Time‐Resolved Synchrotron Radiation Excited Optical Luminescence: Light‐Emission Properties of Silicon‐Based Nanostructures

The recent advances in the study of light emission from matter induced by synchrotron radiation: X‐ray excited optical luminescence (XEOL) in the energy domain and time‐resolved X‐ray excited optical luminescence (TRXEOL) are described. The development of these element (absorption edge) selective, synchrotron X‐ray photons in, optical photons out techniques with time gating coincide with advances in third‐generation, insertion device based, synchrotron light sources. Electron bunches circulating in a storage ring emit very bright, widely energy tunable, short light pulses (<100 ps), which are used as the excitation source for investigation of light‐emitting materials. Luminescence from silicon nanostructures (porous silicon, silicon nanowires, and Si–CdSe heterostructures) is used to illustrate the applicability of these techniques and their great potential in future applications.