Comparative ESI FT-MS and MALDI-TOF structural analyses of representative human <Emphasis Type="Italic">N</Emphasis>-linked glycans

Modern glycan analysis is primarily based on mass spectrometry, where instruments based on electrospray or matrix-assisted laser desorption ionization are currently the most frequently used. In the present study, electrospray ionization (ESI) coupled with a high-resolution Fourier transform mass spectrometer (LTQ Orbitrap) and matrix-assisted laser desorption/ionization (MALDI) coupled with a time-of-flight (TOF/TOF) detector were used to analyze two N-glycan standards with intact free reducing ends (disialo biantennary and asialo triantennary) and representative PA-labeled human serum N-glycan structures isolated by hydrophilic interaction anion-exchange chromatography (HIAX), confirmed by ¹H NMR analysis and consequently compared with the ProteinScape Glycome database. Different combinations of ion sources with fragmentation devices results in various fragmentation patterns and adducts. Also, the effect of sample derivatization on the acquired signals is discussed. Compared to the MALDI technique, free glycans did not lose labile sialic acids easily in the ESI source. On the other hand, fluorescent PA-labeling leads to improved core fragmentation and signal intensities; linkage-specific ethyl esterification leads to reduced adduct and fragment formation and enhanced stability of sialic acids in the MALDI ion source. Thereby, both methods have their advantages and disadvantages in terms of detection, fragmentation and robustness.     

Kinetics of the reaction of <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>-dimethylaniline with 1-bromoalk-2-ynes

Quaternization of N,N-dimethylaniline with propargyl bromide, 1-bromobut-2-yne, and 1-bromooct-2-yne were studied. It was shown that, with the lengthening chain of the substituent at the triple bond, the quaternization rate tends to increase.     

Molecular properties of the copolymers of <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>-diallyl-<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>-dimethylammonium chloride and maleic acid

The hydrodynamic and conformational properties of molecules of poly(N,N-diallyl-N,N-dimethylammonium chloride) and N,N-diallyl-N,N-dimethylammonium chloride-maleic acid copolymers of different compositions in solutions with various ionic-strength and pH values, as well as of the polyelectrolyte complex based on the copolymer with dodecyl sulfate anions in chloroform, are studied. For poly(N,N-diallyl-N,N-dimethylammonium chloride) molecules in a 1 M NaCl solution, the Kuhn segment length and the hydrodynamic diameter of the chain are estimated as A = 3.9 nm and d = 0.48 nm, respectively. In acidic solutions with pH 3.5, the copolymers demonstrate behavior typical for polyelectrolytes. In an alkaline solution with pH 13, when 1 M NaCl is added to the solution of the copolymer containing 29 mol % maleic acid units, there is an antipolyelectrolyte effect that manifests itself as an increase in the intrinsic viscosity of the copolymer and in the hydrodynamic radius of its molecules. It is found that an increase in the fraction of maleic acid units in the copolymer from 12 to 42 mol % brings about a reduction in the equilibrium rigidity of its macromolecules from 4.1 to 2.2 nm. The equilibrium rigidity of polyelectrolyte-complex molecules is higher than that of initial copolymer molecules owing to steric interactions arising between the aliphatic chains of dodecyl sulfate anions. In an electric field, the molecules of the complex are oriented owing to the induced dipole moment resulting from the displacement of dodecyl sulfate anions along the chain contour.     

Copolymer of <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>-diallyl-<Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>-dimethylammonium chloride with maleic acid as drug carrier

A copolymer of N,N-diallyl-N,N-dimethylammonium chloride with maleic acid of constant composition was prepared under the conditions of radical initiation. The possibility of the functionalization of the copolymer with drugs containing amino groups by polymer-analogous transformations was examined. Conditions were found for preparing conjugates of the copolymer with isoniazid. The structures and the quantitative compositions of the conjugates were determined by ¹³С NMR spectroscopy, and the possibility of preparing conjugates with controlled drug content was demonstrated.     

New identification of proanthocyanidins in cinnamon (<Emphasis Type="Italic">Cinnamomum zeylanicum</Emphasis> L.) using MALDI-TOF/TOF mass spectrometry

The inner bark of Ceylon cinnamon (Cinnamomum zeylanicum L.) is commonly used as a spice and has also been widely employed in the treatment and prevention of disease. The positive health effects associated with the consumption of cinnamon could in part be due to its phenolic composition; proanthocyanidins (PA) are the major polyphenolic component in commercial cinnamon. We present a thorough study of the PA profile of cinnamon obtained using matrix-assisted laser desorption/ionization tandem time-of-flight (MALDI-TOF/TOF) mass spectrometry. In addition to the advantages of MALDI-TOF as a sensitive technique for the analysis of high-molecular-weight compounds, the tandem arrangement allows the identification of the compounds through their fragmentation patterns from MS/MS experiments. This is the first time that this technique has been used to analyze polymeric PA. The results show that cinnamon PA are more complex than was previously thought. We show here for the first time that they contain (epi)gallocatechin and (epi)catechingallate units. As gallates (galloyl moieties) and the pyrogallol group in gallocatechins have been related to the biological activity of grape and tea polyphenols, the presence of these substructures may explain some of the properties of cinnamon extracts. MALDI-TOF/TOF reveals that cinnamon bark PA include combinations of (epi)catechin, (epi)catechingallate, (epi)gallocatechin, and (epi)afzelechin, which results in a highly heterogeneous mixture of procyanidins, prodelphinidins, and propelargonidins.     

Prediction of electron-ionization mass spectra of <Emphasis Type="Italic">O</Emphasis>-Alkyl-<Emphasis Type="Italic">N,N</Emphasis>-dialkylphosphoramido cyanidates

A method is proposed for the prediction of electron-ionization mass spectra of highly toxic O-alkyl-N,N-dialkylphosphoramido cyanidates. The approach is based on the fact that the compounds can be divided into three groups by the type of fragmentation. The main group (O-alkyl, O-methyl, O-ethyl) containing almost all compounds of this class (61440 of 61460), in its turn, can be divided into ten subgroups characterized by different combinations of two N-alkyl radicals. Each subgroup possesses its specific generalized spectral image, i.e., a set of peaks characterized by mass numbers and relative intensities. A spectrum of an individual O-alkyl-N,N-dialkylphosphoramido cyanidate is considered as a sum of the generalized spectral image of a corresponding subgroup and a spectrum of an alkene with a carbon chain identical to the O-alkyl group of the molecule.     

Effect of molecular weight of poly-<Emphasis Type="Italic">N</Emphasis>-benzyl-<Emphasis Type="Italic">N,N</Emphasis>-dimethyl-<Emphasis Type="Italic">N</Emphasis>-methacryloyloxyethylammonium chloride on its complexation with sodium dodecyl sulfate

Complexation of a cationic polyelectrolyte, poly-N-benzyl-N,N-dimethyl-N-methacryloyloxyethylammonium chloride, with an ananionic surfactant, sodium dodecyl sulfate, in aqueous solutions is studied. The effect of the molecular weight of the polymer on phase separation in the system and on the stability, conformation, and surface activity of the polyelectrolyte-surfactant complexes is examined.     

Identification of<Emphasis Type="Italic"> N</Emphasis>-glycosylation sites of the murine neural cell adhesion molecule NCAM by MALDI-TOF and MALDI-FTICR mass spectrometry

Mass spectrometry has been shown in recent years to be a powerful tool to determine accurate molecular masses and sequences of peptides and proteins and post-translational modifications such as glycosylation, phosphorylation, and sulfation. For glycosylation, it has been increasingly recognized to be of pivotal importance to identify whether potential glycosylation sites are actually modified by glycans, because functions of proteins may be modulated or depend on the presence of glycans at specific sites. Several recent reports have established that mass spectrometric techniques such as matrix-assisted laser desorption/ionization or electrospray ionization mass spectrometry (MALDI-TOF or ESI-MS, respectively) with or without preceding HPLC and in combination with PNGase F treatment are suited to analyze whether consensus sequences for N-glycosylation are glycosylated or not. Here we report the mass spectrometric analysis of the six potential N-glycosylation sites of the neural cell adhesion molecule NCAM from adult mouse brain. Unmodified peptides and glycopeptides each carrying a single glycosylation site were generated from NCAM by AspN and trypsin treatment and submitted to reversed-phase HPLC with or without prior enzymatic release of N-glycans. The resulting peptides were analyzed by MALDI-TOF-MS. In addition, high-resolution Fourier transform–ion cyclotron resonance (MALDI-FTICR) mass spectrometry was performed after in-gel deglycosylation and subsequent trypsin digestion. By using these procedures all six consensus sequences were shown to be glycosylated; the observation of an unmodified peptide with the consensus sequence N-1 indicates only partial glycosylation at this site.Abbreviations amu atomic mass units - AspN endoproteinase AspN - CAM cell adhesion molecule - ESI electrospray ionization - FTICR Fourier transform–ion cyclotron resonance - IgSF immunoglobulin superfamily - MALDI-TOF matrix-assisted laser desorption ionization–time of flight - MS mass spectrometry - NCAM neural cell adhesion molecule - PNGase F peptide-N ⁴-(N-acetyl--glucosaminyl)asparagine amidase - PSA polysialic acid - TFA trifluoroacetic acid     

Grafting of poly-<Emphasis Type="Italic">N</Emphasis>-methacryloylaminodeoxyglucose on poly-<Emphasis Type="Italic">N</Emphasis>-vinylpyrrolidone

A graft copolymer simulating glycoprotein was prepared by reaction of poly-N-methacryloylaminodeoxyglucose containing terminal amino group with a copolymer of N-vinylpyrrolidone and acrylic acid N-hydroxysuccinimide ester.Translated from Zhurnal Prikladnoi Khimii, Vol. 77, No. 8, 2004, pp. 1356–1359.Original Russian Text Copyright © 2004 by Nazarova, Pavlov, Kever, Afanaseva, Panarin.     

Reaction of <Emphasis Type="Italic">N</Emphasis>-methyl-<Emphasis Type="Italic">N,N</Emphasis>-bis(silatranylmethyl)amine with trichlorosilane

N,N-Bis(silatranylmethyl)methylamine reacts with trichlorosilane to form the amine hydrochloride and perchloropolysilane, the product of polymerization of dichlorosilylene. In the presence of 1,3-butadiene the main products of the reaction are the amine hydrochloride and 1,1-dichlorosilacyclopentene-3, the product of 1,4-addition of dichlorosilylene to 1,3-butadiene.     

Homogeneous alkalization of cellulose in <Emphasis Type="Italic">N</Emphasis>-methylmorpholine-<Emphasis Type="Italic">N</Emphasis>-oxide/water solution

Alkali cellulose is an important intermediate in the production of cellulose derivatives. N-methylmorpholine-N-oxide (NMMO)/H₂O was used as a homogeneous reaction medium for the cellulose alkalization process to intensify the alkalization degree and improve the substitution uniformity. The morphology, specific surface area and crystalline structure of pristine cellulose, the as-synthesized alkali cellulose and dissolved-regenerated cellulose were characterized by SEM, BET, XRD and FT-IR, respectively. The results showed that the homogeneous reaction medium not only offered a low mass transfer resistance, but also facilitated a disruption of the hydrogen bond in cellulose, thus resulting in the transformation of the cellulose structure from complicated stacking chains to simple glucose chains. The interior hydroxyl groups in the cellulose became accessible to the alkaline reagent NaOH to enhance the alkalization process for the increase in bonding alkali content and the improvement in substitution uniformity. The bonding alkali content was calculated by the difference between total added alkali and free alkali and was achieved as 0.61 g/g cellulose at the optimized operation conditions: reaction temperature of 95 °C, reaction time of 90 min, NMMO dosage of 90.00 g, cellulose 1.0 g and NaOH concentration of 1.40 wt%. Meanwhile, in the conventional alkalization process, the bonding alkali content was just 0.41 g/g cellulose. The alkali cellulose prepared in NMMO/H₂O medium has a large specific surface area of 125 m² g^?1 and an extremely low crystallinity degree. The NMMO/H₂O system represents a potential homogeneous solvent for the cellulose alkalization process.     

Molecular structure and conformation of <Emphasis Type="Italic">N,N</Emphasis>-dimethylaniline by gas-phase electron diffraction and quantum-chemical calculations

Geometric parameters of N,N-dimethylaniline were determined by gas-phase electron diffraction using a dynamic model where rotation of the NMe₂ group is treated as a large-amplitude motion. Structural parameters were refined with accounting for geometry relaxation on the basis of DFT calculations at the B3LYP/cc-pVTZ level of theory. The torsion potential possesses a single minimum corresponding to a quasi-planar structure of the Ph-NC₂ fragment. A factor that is responsible for the molecular structure and conformation of N,N-dimethylaniline is p- interaction.Translated from Zhurnal Obshchei Khimii, Vol. 74, No. 8, 2004, pp. 1348–1354.Original Russian Text Copyright © 2004 by Novikov, Samdal, Vilkov.Deceased.This revised version was published online in April 2005 with a corrected cover date.     

Radical copolymerization of <Emphasis Type="Italic">N,N</Emphasis>-diallyl-<Emphasis Type="Italic">N,N</Emphasis>-dimethylammonium chloride and maleic acid in various solvents

Radical copolymerization of N,N-diallyl-N,N-dimethylammonium chloride with maleic acid in various solvents was studied. The solvent effect on the relative activity of the monomers and the possibility of preparing copolymers of preset composition were examined.     

Thiocyanation of <Emphasis Type="Italic">N</Emphasis>-arylsulfonyl-, <Emphasis Type="Italic">N</Emphasis>-aroyl-, and <Emphasis Type="Italic">N</Emphasis>-[(<Emphasis Type="Italic">N</Emphasis>-arylsulfonyl)benzimidoyl]-1,4-benzoquinone imines

Reactions of thiocyanate ion with N-aroyl-, N-arylsulfonyl-, and N-(N-arylsulfonylbenzimidoyl)-1,4-benzoquinone imines follow the 1,4-addition pattern, and the adducts undergo intramolecular cyclization to give the corresponding N-substituted 5-amino-1,3-benzoxathiol-2-ones as final products.     

Synthesis of amino acid conjugates of glycyrrhizic acid using <Emphasis Type="Italic">N</Emphasis>-hydroxyphthalimide and <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>'-dicyclohexylcarbodiimide

Synthesis of amino acid conjugates of glycyrrhizic acid with the use of N-hydroxyphthalimide, N,N'-dicyclohexylcarbodiimide, and tert-butyl esters of L-amino acids (valine, isoleucine, phenylalanine, and methionine) was performed followed by deprotection with trifluoroacetic acid. The target amino acid conjugates were isolated by column chromatography on silica gel in 40–45% yield. The structure of the prepared compounds was confirmed by IR and ¹³C NMR spectroscopy.     

Matrix-assisted laser desorption/ionization tandem mass spectrometry and post-source decay fragmentation study of phenylhydrazones of <Emphasis Type="Italic">N</Emphasis>-linked oligosaccharides from ovalbumin

N-linked oligosaccharides were released from hen ovalbumin by PNGase F and derivatized with phenylhydrazine. They were then examined by matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. Phenylhydrazones of N-glycans under MALDI-tandem mass spectrometry (MS/MS) and post-source decay (PSD) conditions produced relatively similar fragmentation patterns; however, more cross-ring cleavages and fragment ions corresponding to low abundance isomeric structures were detected by MS/MS and not in PSD. Most fragment ions corresponded to glycosidic cleavages with preferential loss of residues from the chitobiose core and the 3-antenna. Sialylated phenylhydrazone-N-glycans, characterized here for the first time in ovalbumin by tandem mass spectrometry, underwent losses of sialic acid residues followed the same fragmentation pathways observed with neutral derivatized glycans. The relative abundances of some fragment ions indicated the linkage position of sialic acid and provided information on the number of residues attached to the 6-antenna. Also, new structures of ovalbumin glycans were observed as part of this study and are reported here.     

<Emphasis Type="Italic">N</Emphasis>-halohexamethyldisilazanes

The review is devoted to N-halohexamethyldisilazanes, perspective but scantily studied halogenating agents. Methods of preparation, physiochemical characteristics, and synthetic potential are considered. Mechanisms of a number of reactions are presented.     

Reactions of <Emphasis Type="Italic">N</Emphasis>-Allyl- and <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>-Diallyltrifluoromethanesulfonamides with Carboxylic Acid Amides under Oxidizing Conditions

Reactions of acetamide and benzamide with N-allyltrifluoromethanesulfonamide in the presence of t-BuOCl–NaI afforded exclusively 2,5-bis(chloromethyl)-1,4-bis(trifluoromethanesulfonyl)piperazine. Analogous reaction with N,N-diallyltrifluoromethanesulfonamide gave mixed halogenation product at only one C=C double bond of the substrate.