Computer program for neutron activation analysis with the SLOWPOKE reactor

A FORTRAN computer program for automatic neutron activation analysis is presented. The program locates and identifies peaks in a gamma-ray spectrum, calculates peak areas and the concentrations of the elements of interest in the sample. This program was specifically designed for the SLOWPOKE reactor, it uses a semi-absolute method and does not need standards or flux monitors. The program was written so as to minimize the computation time, and a typical 4096-channel spectrum is processed in five seconds by an IBM 360/75 computer.     

CONSEL, a least-squares program for estimating stability constants from polarographic data

This article describes CONSEL, a least-squares linear-regression program which, when applied to polarographic data, provides estimates of stability constants suitable for priming non-linear optimization programs. The use of CONSEL avoids the need for recourse to traditional graphical methods. The results of its application to three systems are presented.     

New possibilities for least-squares fitting of mössbauer spectra

A non-linear least-squares program for the analysis of Mössbauer spectra is presented. The program is capable of resolving very complex spectra and can be used on a minicomputer system, with regard to both calculation time and memory requirements. The commonly used x²-minimization algorithm was slightly adapted, so as to broaden its working range. All possibilities for fixing or changing parameters are provided. Two new parameter limitation techniques, which greatly reduce the need for manual intervention during the fitting process, are discussed extensively.     

Pre-fractionated microbial samples--the second generation natural products library at Wyeth

From the beginning of the antibiotic era in the 1940s to the present, Wyeth has sustained an active research program in the area of natural products discovery. This program has continually evolved through the years in order to best align with the "current" drug discovery paradigm in the pharmaceutical industry. The introduction of high-throughput screening and the miniaturization of assays have created a need to optimize natural product samples to better suit these new technologies. Furthermore, natural product programs are faced with an ever shortening time period from hit detection to lead characterization. To address these issues, Wyeth has created a pre-fractionated natural products library using reversed-phase HPLC to complement their existing library of crude extracts. The details of the pre-fractionated library and a cost-benefit analysis will be presented in this review.     

A heuristic computer program for automatic spectrum assignment in microwave spectroscopy

A heuristic computer program has been written in fortran IV to do the automatic assignment of the microwave spectrum of a rigid, asymmetric rotor with no centrifugal or hyperfine effects. Given certain guidelines, the program needs only the observed lines and the transitions for which frequencies are to be assigned. It does not need any other physically observed effect (e.g. the Stark effect).     

Methods for preparing comparative standards and field samples for neutron activation analysis of soil

One of the more difficult problems associated with comparative neutron activation analysis (CNAA) is the preparation of standards which are tailor-made to the desired irradiation and counting conditions. Frequently, there simply is not a suitable standard available commercially, or the resulting gamma spectrum is convoluted with interferences. In a recent soil analysis project, the need arose for standards which contained about 35 elements. In response, a computer spreadsheet was developed to calculate the appropriate amount of each element so that the resulting gamma spectrum is relatively free of interferences. Incorporated in the program are options for calculating all of the irradiation and counting parameters including activity produced, necessary flux/bombardment time, counting time, and appropriate source-to-detector distance. The result is multi-element standards for CNAA which have optimal concentrations. The program retains ease of use without sacrificing capability. In addition to optimized standard production, a novel soil homogenization technique was developed which is a low cost, highly efficient alternative to commercially available homogenization systems. Comparative neutron activation analysis for large scale projects has been made easier through these advancements. This paper contains details of the design and function of the NAA spreadsheet and innovative sample handling techniques.     

A computational algorithm for the Green's function method of sensitivity analysis in chemical kinetics

The recent interest in numerical modeling of chemical kinetics has generated the need for proper analysis of the system sensitivities in such models. This paper describes the logic for a program developed by the authors to implement the Green's function method of sensitivity analysis in complex kinetic schemes. The relevant equations and numerical details of the algorithm are outlined, two flow charts are provided, and some special programming considerations are discussed in some detail. Computer storage and computational time considerations are also treated. Finally, applications of sensitivity information to understanding complex kinetic system behavior and analyzing experimental results are suggested.     

Proficiency testing as a tool to assess the performance of visual TLC quantitation estimates

The use of rapid and inexpensive nonlaboratory-based screening tests for drug quality assessments is recommended as a component of a drug quality assurance program in poor resource settings. We have established routine Minilab test procedures to screen product quality and a proficiency testing program to determine the competency of the inspectors and reliability of results. Samples for the proficiency testing were prepared by pulverizing a standard reference tablet of the appropriate drug and making serial dilutions with starch to obtain concentrations of 0, 40, and 100%. The samples, which were labeled only with the drug name and an identifying letter, were given to inspectors for quality screening using Minilab procedures. In round 1 of the proficiency test, only 3 of 28 substandard samples were correctly identified. Round 2 of the proficiency test, which was administered after a performance qualification test for the analytical method, showed much improvement: 19 of 27 substandard drugs were correctly identified, while 5 out of 9 inspectors made the correct inference on the quality of 45 samples. However, in both rounds, 2 inspectors failed to identify substandard samples, indicating that their technical competencies need to be improved for the reliability of the results. Although the thin-layer chromatography screening methods provide a rapid means for drug quality assessment, they need to be put in the hands of competent users. The inclusion of a proficiency test in the screening program provides a measure of determining competency of the personnel and reliability of the results.     

Assessment of the sorption capacity and regeneration of carbon dioxide sorbents using thermogravimetric methods

Adsorption methods using solid sorbents are an alternative to the absorption technology in the processes of purification gases from carbon dioxide. There is a need to rapidly assess the suitability of sorbents for use it in PSA, TSA, or VPSA installations. Important parameters which determine the quality of the sorbent are the sorption capacity of sorbent, selectivity to CO₂ and the possibility of regeneration. This paper presents the results of sorption/desorption of CO₂ study on the impregnated porous materials using thermogravimetric methods. Thermogravimetry allows for rapid assessment of sorption capacity and regeneration of the sorbents. Specially selected temperature program allowed to determine the sorption capacity of sorbents depending on the concentration of CO₂ in the gas mixture and temperature. Degree of sorbent purification was determined in desorption process.     

Capability of laboratories to determine core nutrients in foods: results of an international proficiency test

A proficiency test (PT) to assess the capabilities of laboratories to determine nutrients in a biscuit sample was carried out in September 2009. The need for such interlaboratory comparison arose from an increasing nutrition labeling requirements of different countries around the world. Forty-eight laboratories worldwide participated in this PT program for the determination of total lipids, saturated fat, trans-fat, protein, sugars, total dietary fiber (TDF), ash and sodium in food. This program was organized under the auspices of the Asia-Pacific Laboratory Accreditation Cooperation (APLAC). APLAC considers PT programs as one of the objective means of assessing the performance of the accredited laboratories. The program is one of the APLAC PT series whose primary purposes are to establish mutual agreement on the equivalence of the operation of APLAC member laboratories and to provide an opportunity to identify testing deficiency so that corrective actions can be taken, if necessary. The results of this program indicated that the consensus mean values estimated by robust statistics were in good agreement with the corresponding values obtained in the homogeneity tests except for trans-fat and TDF. The relative standard deviations of participant results for trans-fat and TDF were also found to be higher (19 and 24%, respectively) than the other test parameters. The relative standard deviations for other test parameters were less than 10%. One-half of the laboratories obtained satisfactory z-scores (| z | < 3) (\left| z \right| < 3) for all their reported results. Although participants were instructed to provide the measurement uncertainties of their reported results, only 27.5% of them had done so. Albeit many of the measurement uncertainties appear to be reasonable, some of them were found to vary widely, indicating that some laboratories still have difficulties in estimating measurement uncertainties. Although the overall measurement capability can be considered to be satisfactory, there is still room for improvement of analytical procedures.     

GenLocDip: A Generalized Program to Calculate and Visualize Local Electric Dipole Moments

Local dipole moments (i.e., dipole moments of atomic or molecular subsystems) are essential for understanding various phenomena in nanoscience, such as solvent effects on the conductance of single molecules in break junctions or the interaction between the tip and the adsorbate in atomic force microscopy. We introduce Gen Loc Dip , a program for calculating and visualizing local dipole moments of molecular subsystems. Gen Loc Dip currently uses the Atoms‐In‐Molecules (AIM) partitioning scheme and is interfaced to various AIM programs. This enables postprocessing of a variety of electronic structure output formats including cube and wavefunction files, and, in general, output from any other code capable of writing the electron density on a three‐dimensional grid. It uses a modified version of Bader's and Laidig's approach for achieving origin‐independence of local dipoles by referring to internal reference points which can (but do not need to be) bond critical points (BCPs). Furthermore, the code allows the export of critical points and local dipole moments into a POVray readable input format. It is particularly designed for fragments of large systems, for which no BCPs have been calculated for computational efficiency reasons, because large interfragment distances prevent their identification, or because a local partitioning scheme different from AIM was used. The program requires only minimal user input and is written in the Fortran 90 programming language. To demonstrate the capabilities of the program, examples are given for covalently and non‐covalently bound systems, in particular molecular adsorbates. © 2016 Wiley Periodicals, Inc.     

Ultra-large Scale Molecular Dynamics Simulation for Nano-engineering

In light of the special need of nano-engineering, an ultra-large scale and high-performance molecular dynamics（MD） simulation program was implemented. In many nano-engineering processes, the free boundary condition should be adopted. To meet this particular requirement, a pointer link and dynamic array data structures were employed so that both reliability and accuracy of simulation could be ensured. Using this method, one could realize the MD simulation of the nano-engineering system consisting of several million atoms per single CPU.     

A computer program for the collection,reduction and analysis of echelle spectra

This article is an electronic publication in Spectrochimica Acta Electronica (SAE), the electronic section of Spectrochimica Acta Part B (SAB). The hardcopy text, comprising the main article and an appendix, is accompanied by a disk containing the compiled program, a manual, the source code and tutorial in ASCII format, and data files. The work presented is a result of the need to facilitate collection, calibration, and extraction of data from an echelle spectrometer employing charge coupled array detection (CCD). A computer program, written using Microsoft's BASIC Professional Development System version 7.1 under MS DOS, is explained and demonstrated. Wavelength calibration requires critical spectrometer dimensions, grating counter settings, and the identification of a single spectral line. Calibration accuracies are better than ± 1 pixel across a 576 × 384 pixel array. Extraction of intensity-normalized spectra for all detected orders requires less than 3 min on a 33 MHz 80386 personal computer with an 80387 math coprocessor.     

A data-oriented CI program system

A program system has been developed for calculation of molecular electronic structure using the configuration interaction (CI) method. Emphasis is placed on the inherent genealogical data structure of the files which a program system produces. Based on this genealogy, a language is provided for users which allows easy and consistent manipulation of files in the new system. Users need only specify a file which contains the desired data, using this file manipulation language. If the desired file does not exist, the new system creates it automatically by calling appropriate modules. The new system may be regarded as a data base equipped with computational ability.     

Voltammetric instrumentation controlled by two microcomputers

A voltammetric instrument with two microcomputers is described. An INTEL SYS 80/10A microcomputer, interfaced to the electrochemical cell, is provided with general machine-code routines in PROM for control and measurement. A personal computer (Luxor/Scandia Metric ABC 80) is used for control of the microcomputer and for evaluation of results. A list of machine-code routine addresses with parameters comprises a program. The parameters are selected at the personal computer which also loads the program into the SYS 80/10A and initiates the experiment. The use of two low-cost computers eliminates the need for a complex multi-task system or a remote host computer.     

Application of instrumental radioanalytical techniques to nuclear waste testing and characterization

This paper describes the validation of a multi-technique analytical methodology that uses inductively coupled plasma-mass spectrometry, α-spectrometry, and γ-spectrometry for the routine analysis of samples containing transuranic radionuclides. This methodology is capable of the determination of concentrations of both²³⁸Pu and²⁴¹Pu in the presence of²³⁸U and²⁴¹Am without the need for chemical separations. The relative merits of these three techniques were evaluated as they are applied in a nuclear waste material and spent nuclear fuel testing program by analytical (1) standards and (2) solutions prepared from the dissolution of glasses doped with²³⁷Np,²³⁹Pu, and²⁴¹Am. The uncertainty associated with technique was within ±4% for standards and ±10% for doped nuclear waste glasses. The methodology was then used to analyze three fully radioactive waste glasses.     

An electronic aid for line selection for scanning inductively coupled plasma atomic emission spectrometers

This article is an electronic publication in Spectrochimica Acta Electronica (SAE), the electronic section of Spectrochimica Acta Part B (SAB). Accompanying this hard copy text is a disk containing the program, source flies, data files and a brief manual along with a few programming notes. The main article discusses the purpose of this work, and the Appendix provides brief instruction on the use of the program, manipulation of the data, and source code. An automatic file selection system for the control of a rapid scanning spectrometer performing atomic emission spectrometry has been developed using the PROLOG language. The system can be “taught” the elemental composition of a given sample type. It uses this information (when available) to generate a linear search strategy which minimizes the number of lines that need to be measured. The rules used by the system can be observed during system operation to allow a trace of the logic. Reading of the initial data base takes no more than 6 s and then decisions are made in less than 1 s per line.     

Parallel internally contracted multireference configuration interaction

A parallel implementation of the internally contracted (IC) multireference configuration (MRCI) module of the MOLPRO quantum chemistry program is described. The global array (GA) toolkit has been used in order to map an existing disk-paging small-memory algorithm onto a massively parallel supercomputer, where disk storage is replaced by the combined memory of all processors. This model has enabled a rather complicated code to be ported to the parallel environment without the need for the wholesale redesign of algorithms and data structures. Examples show that the parallel ICMRCI program can deliver results in a fraction of the time needed for equivalent uncontracted MRCI computations. Further examples demonstrate that ICMRCI computations with up to 10⁷ variational parameters, and equivalent to uncontracted MRCI with 10⁹ configurations, are feasible. The largest calculation demonstrates a parallel efficiency of about 80% on 128 nodes of a Cray T3E-300. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 1215–1228, 1998     

Towards the development of synthetic routes using theoretical calculations: an application of in silico screening to 2,6-dimethylchroman-4-one

This study describes an attempt to develop a synthetic route using theoretical calculations, i.e., in silico synthesis route development. The KOSP program created four potential synthetic routes for generating 2,6-dimethylchroman-4-one. In silico screening of these four synthetic routes was then performed. In silico screening involves theoretical analysis of synthetic routes prior to actual experimental work. A synthetic route using the Mitsunobu reaction had already been reported by Hoddgets et al. Theoretical investigations were also conducted on two S(N)Ar reactions as well as a Michael reaction before they were examined experimentally. In silico screening using DFT calculations indicated that only the Michael reaction was likely to produce the target. Experimental work confirmed that the target was obtained in a yield of 76.4% using the Michael reaction. The other two routes, except for the Mitsunobu reaction, failed to generate the target. Our results demonstrate that theoretical calculations can be used to narrow down the number of experiments that need to be conducted when developing novel synthetic routes.     

One-bead-one-compound library of end-capped dipeptides and deconvolution by microflow NMR

As part of our program to identify novel small molecules with interesting biological activity, we have designed and synthesized a library of end-capped dipeptides with an emphasis on compound diversity, complexity, and membrane permeability. An approximately 1500-member library was synthesized manually on large polystyrene beads using the mix-and-split method. The final compounds were cleaved into 384-well plates to generate individual stock solutions for input into high-throughput biological screens. Individual compounds were decoded using a combination of mass spectrometry and microflow NMR spectroscopy. In principle, this approach to deconvolution obviates the need for complicated binary encoding-decoding strategies for one-bead-one-compound libraries.