Self-assembly of small polycyclic aromatic hydrocarbons on graphite: a combined scanning tunneling microscopy and theoretical approach

Self-assembled monolayers of chrysene and indene on graphite have been observed and characterized individually with scanning tunneling microscopy (STM) at 80 K under low-temperature, ultrahigh vacuum conditions. These molecules are small, polycyclic aromatic hydrocarbons (PAHs) containing no alkyl chains or functional groups that are known to promote two-dimensional self-assembly. Energy minimization and molecular dynamics simulations performed for small groups of the molecules physisorbed on graphite provide insight into the monolayer structure and forces that drive the self-assembly. The adsorption energy for a single chrysene molecule on a model graphite substrate is calculated to be 32 kcal/mol, while that for indene is 17 kcal/mol. Two distinct monolayer structures have been observed for chrysene, corresponding to high- and low-density assemblies. High-resolution STM images taken of chrysene with different bias polarities reveal distinct nodal structure that is characteristic of the molecular electronic state(s) mediating the tunneling process. Density functional theory calculations are utilized in the assignment of the observed electronic states and possible tunneling mechanism. These results are discussed within the context of PAH and soot particle formation, because both chrysene and indene are known reaction products from the combustion of small hydrocarbons. They are also of fundamental interest in the fields of nanotechnology and molecular electronics.     

Palladium-catalyzed pentannulation of polycyclic aromatic hydrocarbons

We present a new and versatile one-step synthesis of a series of small molecular chromophores based on cyclopentannulated polycyclic aromatic hydrocarbons (PAH). Easily available pyrene, anthracene, and perylene bromides serve as starting materials for the reactions. The formation of the five-membered ring is achieved by the straightforward palladium(0)-catalyzed carbannulation with various substituted acetylenes. This approach is applicable either to single or multiple annulation procedures leading to hitherto inaccessible PAH topologies. According to the resulting products of the diverse reactions, a mechanistic explanation is proposed. UV/Vis absorption as well as cyclovoltammetric measurements were performed for characterization demonstrating the value of this annulation technique. Optical absorptions of up to 780 nm and absorption coefficients ranging from 8000 to 34,000 M(-1) cm(-1) were detected.     

Simplified determination of polycyclic aromatic hydrocarbons

Accurate quantitative analysis for selected polycyclic aromatic hydrocarbons present on urban dust can be obtained by using a simple procedure consisting of sonic-probe extraction with cyclohexane; clean-up with Florisil((R))-XAD-4((R)), and measurement by high-resolution gas chromatography with flame-ionization detection (HRGC/FID). The analysis can be further simplified by eliminating the clean-up step if HRGC/electron-impact mass-spectrometry (MS) is available. Both the FID and MS methods give results consistent with those obtained by standard procedures. The direct HRGC/MS procedure, combined with chemical ionization, can also be applied to the determination of polycyclic organic materials present in solvent-refined coal, shale oil and crude oil.     

Analysis of nitrated polycyclic aromatic hydrocarbons

Many nitrated polycyclic aromatic hydrocarbons (NPAH) that are present in low concentrations in the environment and in emission sources have been shown to be mutagenic and/or carcinogenic. This paper reviews the current methods of analysis of these compounds with the emphasis on NPAH measurements in ambient particulate matter samples.     

Enthalpies of formation of polycyclic aromatic hydrocarbons

Comparison of the experimental enthalpies of formation of 77 polycyclic aromatic hydrocarbons with those calculated by semiempirical quantum-chemical methods showed that the AM1 approximation ensures the best agreement between the experimental and calculated values. The enthalpies of formation of 60 compounds of this series were calculated using the AM1 method and the corresponding linear regression equation.     

The spectrophotometric determination of polycyclic aromatic hydrocarbons

The determination of polycyclic aromatic hydrocarbons by elution chromatography from alumina columns followed by ultra-violet spectrophotometry has been elaborated for a more extended range of substances than has been published previously. The methods have been standardised and tables of absorption peaks are provided for easy identification of a number of compounds commonly found as traces in combustion products. Recommendations are given for the preparation of samples for determinations by this method, which has been successfully employed for the analysis of carbon blacks, soots, urban air solids, condensible smokes such as tobacco smoke, wood smoke and coal tar. thermal decomposition or pyrolysis products and other substances, such as urban vegetation, soil, tobacco, snuff, smoked food, and surface drainage water, which have been subjected to the action of smokes or other combustion products.     

Heat capacities of liquid polycyclic aromatic hydrocarbons

Liquid heat capacities of 14 aromatic hydrocarbons were measured using a DSC calorimeter. Measurements were performed in the temperature range 100 K above the melting temperature of each hydrocarbon. The lowest and highest temperatures considered were respectively 303 and 692 K. Experimental results were correlated using Benson's group contribution approach. The group parameters determined allow the experimental results to be represented to within 2%.     

Far-infrared spectroscopy of small polycyclic aromatic hydrocarbons

Both experimental and theoretical spectroscopic studies on small gas phase polycyclic aromatic hydrocarbons in the far-infrared spectral region are reported. The experimental set-up based on thermal emission and Fourier transform far infrared analysis led to the detection of relatively broad vibrational bands, unresolved in rotation, representative of each molecule. Detailed theoretical investigations were performed, including both ab initio calculations and spectral simulations. For the majority of the samples, this study provides the first detection of the vibrational modes associated with the skeleton motions.     

Differential calorimetric study of polycyclic aromatic hydrocarbons

The temperature, enthalpy, entropy of melting and crystal transitions of 21 polycyclic aromatic hydrocarbons, containing from 2 to 6 unsubstituted condensed rings, were determined by differential scanning calorimetry. The temperature and the molar entropy of melting generally increase with increasing degree of symmetry and molecular size of the hydrocarbon. Apparent deviations from this trend are discussed in terms of molecular distorsion due to steric interaction between neighbouring hydrogens.     

Theoretical studies on the carcinogenicity of polycyclic aromatic hydrocarbons

The distinct molecular regions of a set of 28 polycyclic aromatic hydrocarbons (PAHs) showing varying degrees of carcinogenic activity (CA) have been analyzed on the basis of their calculated molecular electrostatic potential (MESP) at B3LYP/6-31+G(d,p) level of theory. The MESP, being a property directly related to electron density, clearly distinguishes the electron dense centers in the molecule into K, L, M, and newly defined N regions. Further, a quantitative structure activity relationship (QSAR) model of carcinogenicity is developed using the volume of MESP lobes at the named regions for a set of 17 carcinogenic molecules with experimentally known CA index. The QSAR equation suggested that all the geometrical regions are significant in determining the carcinogenic property of PAHs. The model clearly showed that K and M regions have activating carcinogenic effect whereas L and N regions have deactivating carcinogenic effect. The CA showed considerable enhancement when any three distinct regions are present in a PAH. On the other hand, all the PAH systems with only one type of region are inactive irrespective of whether the region is activating or deactivating. Similarly, molecules showing the presence of two types of regions are either inactive or weakly active. The essential features of both the "K, L region" and the "bay region" theories of carcinogenesis are well evident in the new QSAR model, as the former theory works on the basis of activating K and deactivating L regions whereas the latter theory is related with the activating M region.     

Closed-shell polycyclic aromatic hydrocarbon cations: a new category of interstellar polycyclic aromatic hydrocarbons

Density functional theory has been employed to calculate the harmonic frequencies and intensities of a range of polycyclic aromatic hydrocarbon (PAH) cations that explore both size and electronic structure effects on the infrared spectroscopic properties of these species. The sample extends the size range of PAH species considered to more than 50 carbon atoms and includes several representatives from each of two heretofore unexplored categories of PAH cations: (1) fully benzenoid PAH cations whose carbon skeleton is composed of an odd number of carbon atoms (C(odd) PAHs); and (2) protonated PAH cations (HPAH+). Unlike the radical electronic structures of the PAH cations that have been the subject of previous theoretical and experimental work, the species in these two classes have a 'closed'-shell electronic configuration. The calculated spectra of circumcoronene, C54H18, in both neutral and (radical) cationic form are also reported and compared with those of the other species. Overall, the C(odd) PAHs spectra are dominated by strong CC stretching modes near 1600 cm(-1) and display spectra that are remarkably insensitive to molecular size. The HPAH+ species evince a more complex spectrum consistent with the added contributions of aliphatic modes and their generally lower symmetry. Finally, for both classes of closed-shell cations, the intensity of the aromatic CH stretching modes is found to increase with molecular size far out of proportion with the number of CH groups, approaching a value more typical of neutral PAHs for the largest species studied.     

A convergent approach to polycyclic aromatic hydrocarbons

A new concise route to Polycyclic Aromatic Hydrocarbons (PAHs) through radical addition and cyclisation of xanthates is described.     

Porphyrins fused with unactivated polycyclic aromatic hydrocarbons

A systematic study of the preparation of porphyrins with extended conjugation by meso,β-fusion with polycyclic aromatic hydrocarbons (PAHs) is reported. The meso-positions of 5,15-unsubstituted porphyrins were readily functionalized with PAHs. Ring fusion using standard Scholl reaction conditions (FeCl(3), dichloromethane) occurs for perylene-substituted porphyrins to give a porphyrin β,meso annulated with perylene rings (0.7:1 ratio of syn and anti isomers). The naphthalene, pyrene, and coronene derivatives do not react under Scholl conditions but are fused using thermal cyclodehydrogenation at high temperatures, giving mixtures of syn and anti isomers of the meso,β-fused porphyrins. For pyrenyl-substituted porphyrins, a thermal method gives synthetically acceptable yields (>30%). Absorption spectra of the fused porphyrins undergo a progressive bathochromic shift in a series of naphthyl (λ(max) = 730 nm), coronenyl (λ(max) = 780 nm), pyrenyl (λ(max) = 815 nm), and perylenyl (λ(max) = 900 nm) annulated porphyrins. Despite being conjugated with unsubstituted fused PAHs, the β,meso-fused porphyrins are more soluble and processable than the parent nonfused precursors. Pyrenyl-fused porphyrins exhibit strong fluorescence in the near-infrared (NIR) spectral region, with a progressive improvement in luminescent efficiency (up to 13% with λ(max) = 829 nm) with increasing degree of fusion. Fused pyrenyl-porphyrins have been used as broadband absorption donor materials in photovoltaic cells, leading to devices that show comparatively high photovoltaic efficiencies.     

Cyclodehydrogenation reactions to cyclopentafused polycyclic aromatic hydrocarbons

B3LYP/6-31G(d,p) electronic structure calculations are employed to elucidate the reaction mechanisms for the conversion of the alternant C(18)H(12) polycyclic aromatic hydrocarbon benzo[c]phenanthrene into the nonalternant C(18)H(10) PAHs cyclopenta[cd]pyrene and benzo[ghi]fluoranthene. Isomerization reactions such as 5/6-ring switching and hydrogen atom scrambling are analyzed. Bay region chemistry, involving the rupture of one benzene ring followed by the formation of a new five-membered ring, is also studied, together with the mechanism for the formation of an aryne. The rearrangement of the latter yields annelated cyclopentadienylidenecarbene, which is then trapped intramolecularly.     

8,9-Didehydrofluoranthenes as building blocks for the synthesis of extended polycyclic aromatic hydrocarbons (PAHs)

[reaction: see text] The synthesis of phenyl-substituted 8,9-dibromofluoranthene and p-dodecylphenyl-substituted 8,9-fluoranthene anthranilic acid is presented. Their synthetic potential as 8,9-didehydrofluoranthene precursors is demonstrated in combination with a new biscyclopentadienone by the synthesis of novel phenyl-substituted PAHs with up to 14 annulated rings. The crystal structure of 7,16-diphenylfluorantheno[8,9-k]fluoranthene is given.     

Carcinogenicity of polycyclic aromatic hydrocarbons: A dialogue

A discussion between a biochemist and a theoretical chemist reviews the insights that quantum chemistry brings to polycyclic aromatic hydrocarbon carcinogenicity. Limitations as well as successes of the theory are described. The importance of communication between theorists and experimentalists in this complicated field is emphasized.     

Determination of polycyclic aromatic hydrocarbons in tobacco smoke

Improvements have been described in the apparatus and methods employed in determining polycyclic aromatic hydrocarbons in tobacco smoke by alumina-column chromatography and automatic ultra-violet spectrophotometry     

Determination of polycyclic aromatic hydrocarbons in Athens atmosphere

Concentrations of total suspended particulates (TSP), benzene soluble fraction (BSF) and polycyclic aromatic hydrocarbons (PAH) have been determined in ambient air from four different sites in Athens, situated in urban, semi-industrial and industrial areas. GLC analysis has been applied for the determination of PAH, while the CGC/MS technique was used in order to confirm the obtained results. The same PAH pattern was observed for all stations. The identified PAH have been fluoranthene (FLA), pyrene (PYR), benzo(a)anthracene (BaA), chrysene (CHR), benzo(b)fluoranthene (BbF), benzo(k)fluoranthene (BkF), benzo(a)pyrene (BaP), benzo(e)pyrene (BeP) and benzo(ghi)perylene (B(ghi)P). The concentrations of individual PAH ranged from traces to 33 ng m-3 (e.g. same or lower comparing to other large cities). The higher values of PAH were found during adverse meteorological conditions.