Crystal structure of the piperazine-1,4-diium (DL-)hydrogen malate (1:2)

The crystalline salt of piperazine-1,4-diium (DL-)hydrogen malate (1:2), (C₄H₁₂N₂)²⁺ (C₄H₅O₅)₂^–, has been prepared and characterized by X-ray crystallography. The title salt crystallizes in monoclinic space group P2₁/n with a = 7.073(1), b = 14.180(2), c = 7.526(1) Å, = 94.66(1), V = 752.33(18) ų and Z = 2. Results indicate that the title salt exists as a racemic compound but a conglomerate. In the structure, axial and equatorial hydrogen atoms of piperiaine-1,4-diium are all involved in different bifurcated hydrogen bonds. The integral structure, formed by the hard hydrogen bonds of N–HsO and O–HsO, is stabilized further by soft hydrogen bond of C–HsO.     

Crystal structure of 1,1-diphenyl-2,4-dimethyl-5-(N-benzamide)-1,3-pentadiene

Crystals of the title compound are monoclinic (C₂₆H₂₅NO): space groupP2₁/c,a=16.565(3),b=10.328(2),c=12.621(3) Å,=104.02(3)°. The structure was solved by direct methods and refined by block-matrix least-squares to giveR=0.056 andR _w =0.061 for 1613 reflections above 2(I). The amide moiety is tilted by 19.3(2)° with respect to the mean aromatic ring plane. The two othergem phenyl rings subtend a dihedral angle of 112.2(4)° to each other. The molecules are joined in the solid by N-HO hydrogen bonds.     

Intramolecular hydrogen bonding and tautomerism in N-(3-pyridil)-2-oxo-1-naphthylidenemethylamine

N-(3-pyridil)-2-oxo-1-naphthylidenemethylamine (C₁₆H₁₂N₂O) was studied by elemental analysis, IR, ¹H NMR, and UV–visible techniques and X-ray diffraction methods. The UV–visible spectrum of the compound was investigated in solutions effect polarity. The polarity of the some solvents was modifierly the additional (CF₃COOH) and [(C₂H₅)₃N]. The compound is in tautomeric equilibrium (phenol-imine O–H···N and keto-amine O···H–N forms) in polar and nonpolar solvents. The keto-amine form is observed in basic solutions of DMSO, ethanol, chloroform, benzene, cyclohexane, and in acidic solutions of chloroform and benzene, but not in acidic solutions of DMSO and ethanol. The compound crystallizes in the monoclinic, space group P2₁/a with a = 7.010(5) Å, b = 13.669(4) Å, c = 12.764(4) Å, = 101.23(4)°, V = 1199.6(10) ų, Z = 4, D _c = 1.375 g/cm³, (Mo K) = 0.088 mm^–1, R = 0.045 for 1658 reflections [I > 2(I)]. The title compound is not planar two Schiff base moieties A [C1–C11, O1] and B [N1, C12, C13, N2, C14, C15, C16] are inclined at an angle of 27.4(1)° reflecting mainly the twist about C12–N1 [C11–C12–N1–C13, 29.7(2)°]. There is a strong intramolecular hydrogen bond (O–H···N) of 2.529(2) Å.     

X-ray structure analysis of 1-(4-bromophenyl)-3-(4-chlorophenyl)-prop-2-en-1-one

The title compound crystallizes in the monoclinic space group P2₁/c with unit cell parameters a = 15.6239(15) ?, b = 14.0537(14) ?, c = 5.8396(5) ?, β = 92.666(3)°, V = 1280.8 (2) ?³, and Z = 4. The final reliability index is 0.0538 for 2921 observed reflections. Two phenyl rings of the title molecule are not coplanar, with a dihedral angle of 46.3(0)°. The molecular planarity of this substituted chalcone is strongly affected by the 4′-bromo group. The crystal cohesion is accentuated by π···π, C–H···Br interactions and R₃ ¹ (11) hydrogen bond.     

Crystal structures and hydrogen bond analysis of three arenesulfonate salts ofl-alanine,glycine, andl-serine

Single crystal X-ray structures are presented for three amino acid arenesulfonate salts:l-alanine 2,4-dinitrobenzenesulfonate hydrate (1), 21 glycine 1,5-naphthalene-disulfonate dihydrate (2), andl-serine 4-hydroxybenzenesulfonate (3). Hydrogen bond patterns of each salt are analyzed systematically by using hydrogen bond graph set notation. First-, second-, and selected third-level graph set motifs of the three salts are presented and discussed. Hydrogen-bonded diad, chain, ring, ribbon, and two-dimensional sheet patterns are identified in these structures. Even though the three salts contain apparently similar types of hydrogen-bonding interactions, their graph sets are quite different.Deceased June 10, 1992.     

Crystal structures of 3-[1-Benzenesulfonyl-3-phenylsulfanyl-1H-indol-2-yl]-1-[4-(methyl (I)/methoxy (II) phenyl)]-2-phenyl-propane-1-one

The compounds 3-(1-Benzenesulfonyl-3-phenylsulfanyl-1H-indol-2-yl)-1-[4-methyl (I)/methoxy (II)phenyl)]-2-phenyl-propane-1-one crystallize in triclinic space group P . The details are: compound I a = 11.941(6) ?, b = 12.154(7) ?, c = 13.006(7) ?, α = 63.124(8)°, β = 84.464(9)°, γ = 64.810(8)°, V = 1519.7(14) ?³, Z = 2, D _cal = 1.284 Mg m⁻³, and R = 0.0382 (wR = 0.0978); compound II a = 11.897(6) ?, b = 12.268(6) ?, c = 13.001(7) ?, α = 61.919(8)°, β = 83.480(8)°, γ = 64.676(7)°, V = 1504.0(14) ?³, Z = 2, D _cal = 1.333 Mg m⁻³, and R = 0.0422 (wR = 0.1049). The indole ring system in both the molecules I and II are not strictly planar and the dihedral angles formed by the pyrrole and benzo planes are 4.0(7)° and 3.5(8)°, respectively. The C–HO, C–Hπ and ππ types of interactions stabilize the molecules in the unit cell in addition to van der Waal's forces in I and II.     

Crystal growth,crystal structure and pyroelectric properties of the polar hexagonal antimony tartrates MII[Sb2(C4H2O6)2]·2H2O (MII = Ca,Sr, Pb)

Single crystal growth of lead antimony tartrate dihydrate, Pb[Sb₂((+)C₄H₂O₆)₂]·2H₂O, was successfully performed. The determined polar hexagonal crystal structure is isomorphous to the corresponding calcium and strontium antimony tartrates dihydrates. New results of crystal growth and the redetermination of the crystal structures of the nonlinear optical crystal Sr[Sb₂((+)C₄H₂O₆)₂]·2H₂O and its calcium analogue are reported, together with investigations of the thermal stability and the pyroelectric properties of these polar crystals.

     

Crystal structure of N,N-bis(2,5-dioxopyrrolidin-1-ylmethyl)glycine

The preparation and molecular and crystal structures of the title compound are reported. The compound crystallizes in the triclinic space group (No. 2) with unit cell dimensions of a = 7.2493(3) Å, b = 8.9287(4) Å, c = 10.6594(4) Å, = 90.419(3)°, = 91.287(3)°, = 103.153(3)°, V = 671.62(5) ų, and Z = 2. The molecular structure of the title compound consists of three sections, the glycine chain and the two 2,5-dioxopyrrolidin-1-ylmethyl groups. Every molecule is linked with three adjacent molecules through three hydrogen-bonding patterns which are 8-membered or 20-membered rings. The chain of rings appears periodically, which makes the molecule form a layer structure in the crystal.     

Crystal structures of 1,1-di(p-substituted phenyl)-2,2-dinitroethylenes

The X-ray crystal structures of 1,1-di(p-methylphenyl)-2,2-dinitroethylene (2), 1,1-di(p-methoxylphenyl)-2,2-dinitroethylene (3), 1,1-di(p-fluorophenyl)-2,2- dinitroethylene (4), 1,1-di(p-chlorophenyl)-2,2-dinitroethylene (5), and 1-phenyl-1- (p-nitrophenyl)-2,2-dinitroethylene (6) are reported and compared with that of 1,1-diphenyl-2,2-dinitroethylene (1). Owing to steric repulsion between the aryl rings, the single bond lengths between C(1) and the two ring carbons atoms are longer than the normal sp²–sp² bond distance of 1.46 Å. For 4–6 in which the aryl rings contain electron-withdrawing substituents (F, Cl, NO₂), the double bonds between C(1) and C(2) are shorter than those in 2 and 3, whose aryl rings containing electron-donating substituents. Furthermore, the steric repulsion between the aryl rings and C NO₂ fragments results in an appreciable twist about the central double bond. The two aryl rings of compounds 1–6 make dihedral angles of 77.7, 66.6, 62.8, 80.9, 82.0, and 71.2°, and the two C NO₂ fragments make dihedral angles of 68.5, 67.8, 65.9, 76.9, 73.0, and 71.9°, respectively.     

Crystal structures of 1,1′-di(methylacetato)- and 1,1′-di(chloroethoxyethyl)-2,2′-biimidazole

1,1′-Di(methylacetato)-2,2′-biimidazole, C₁₂H₁₄N₄O₄, crystallizes from methanol in the space groupP2 ₁/c, wherea=9.535(2),b=13.385(2),c=5.1208(8) Å,V=652.2(2) ų, andZ=4.1,1′-Di(chloroethoxyethyl)-2,2′-biimidazole, C₁₄H₂₀Cl₂N₄O₂, crystallizes from cyclohexane in the space groupPbca, wherea=12.372(2),b=8.959(2),c=14.840(2) Å,V=1644.9(5) ų, andZ=8. The structures were refined toR=0.041 (1380 observed reflections) andR=0.043 (3243 observed reflections), respectively. Both molecules crystallize with coplanar rings and the substituents assume atrans configuration with a center of inversion between the bridging carbon atoms.     

Crystal and molecular structure of di(1-pyrazolyl)methane,CH2(C3N2H3)2

The title compound consists of two planar pyrazolyl fragments oriented at 73.0° to each other and linked to a common carbon atom. All hydrogen atoms were located unambiguously and their positions were refined.     

Synthesis,Spectroscopy and Crystal Structure Analysis of N1,N3-dicyclohexyl-N1-(all-trans-retinoyl)urea

The title compound, C₃₃H₅₀N₂O₂, is a side product in the reaction of all-trans-retinoic acid (atRA) with N-hydroxysuccinimide, in the presence of the coupling agent N,N′-dicyclohexylcarbodiimide, which produces the ‘active’ ester succinimidyl all-trans-retinoate as the product. It crystallizes in the orthorhombic Pbca space group. The compound was characterized by ¹H-NMR, ¹³C-NMR, ESI–MS and IR spectroscopy and its structure was determined by single-crystal X-ray diffraction. For example in the ¹³C-NMR spectrum, diagnostic peaks are those of the two amide carbonyl C atoms at δ 169.5 and 154.2 ppm, the ten olefinic C atoms of the unsaturated chain of atRA moiety at δ 149.0, 139.3, 137.7, 137.3, 134.9, 130.2, 130.0, 129.4, 128.5 and 121.5 ppm and the two methine C atoms of the N,N′-dicyclohexylurea moiety at δ 57.9 and 49.5 ppm. Detailed analysis of its molecular and supramolecular structure showed that close-packing principles (elongated shape/large hydrophobic region of the molecule) together with chemical factors (N–H?O and C–H?O intermolecular interactions) direct the 3D self-assembly process in the crystalline state. Hirshfeld surface analysis was employed, a powerful approach to quickly and easily gain insight into molecular environments in the crystalline state.

Graphical Abstract

The synthesis and X-ray structure of 1-((2E, 4E, 6E, 8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-enyl)nona-2,4,6,8-tetraenoyl)-1,3-dicyclohexylurea, a side product in the synthesis of succinimidyl all-trans-retinoate, is reported; Hirshfeld surface analysis was employed to identify intermolecular interactions.

     

Intramolecular hydrogen bonding and tautomerism in 1-[N-(4-bromophenyl)]aminomethylidene-2(1H) naphthalenone

1-[N-(4-bromophenyl)]aminomethylidene-2(1H)naphthalenone (C₁₇H₁₂NOBr) (1) was synthesized and its crystal structure was determined. Compound (1) is monoclinic, space group P2₁/n with a = 4.808(1) Å, b = 20.617(1) Å, c = 13.750(1) Å, = 93.004(1)°, V = 1361.11(3) ų, Z = 4, D_c = 1.592 g·cm^–3, (Mo K) = 3.014 mm^–1, R = 0.051 for 1013 reflections [I > 2(I)]. There is a strong intramolecular hydrogen bond of distance 2.544(2) Å between the hydroxyl oxygen atom and imine nitrogen atom, the hydrogen atom essentially being bonded to the nitrogen atom. The title molecule is not planar. X-ray crystal structure determination reveals the existence of the keto (or predominantly keto) tautomer in (1). Spectra of compound (1) were observed by IR and NMR, and UV–visible spectra of (1) were studied in different solvents and acidic media.     

Crystal and molecular structure of 3-(2-(1,10-phenanthrolyl))-5,6-diphenyl-1,2,4-triazine-chloroaquotriphenyltin(IV) (1:1)

3-(2-(1,10-Phenanthrolyl))-5,6-diphenyl-1,2,4-triazine-chloroaquotriphenyl-tin(IV) (1:1) crystallizes in the orthorhombic system:a=19.195,b=9.144,c=21.642 Å,Z=4, space groupPca2₁ (No. 29). The structure was determined using the procedure for difference structures (Dirdir) with CuK diffractometer data, and refined by block-diagonal least squares toR=0.031 for 3287 observed reflections. The tin atom is 5-coordinate with the three phenyl groups forming the equatorial plane. A chlorine atom and a water molecule complete the coordination. The triazine moiety does not coordinate directly to the metal atom. The only interaction is due to two N H-O hydrogen bonds formed between two nitrogen atoms from the ligand and the water molecule.     

Crystal structures and supramolecular assembly of 1:2 piperazine with o- and p-nitrophenol

1:2 Cocrystals of piperazine (PPN) with o- and p-nitrophenol (oNPH and pNPH) were obtained from aqueous solution. The co-crystal structure of PPN, 2pNPH, and 2H₂O is triclinic space group : a = 6.401(1) Å, b = 6.7515(1) Å, c = 11.219(1) Å, = 100.37(1)°, = 97.10(1)°, = 99.99(1)°,V= 465.5(1) ų, Z = 2. Refinement led to a final conventional R value of 0.0365 for 2081 reflections. PPN, 2oNPH, and 2H₂O cocrystallize in the monoclinic space group P2₁ : a = 7.753(1) Å, b = 10.888(2) Å, c = 11.378(2) Å, = 92.89(1)°, V = 953.1(3) ų, Z = 2. Refinement led to a final conventional R value of 0.0347 for 1978 reflections. It was found in both cocrystals that the hydroxyl H-atom of pNPH and oNPH was transferred to a N-atom of PPN, forming new ionic complexes PPNH₂ ²⁺2(oNP^–) and PPNH₂ ²⁺2(pNP^–), respectively.     

Crystal structure of a salt complex between (<Emphasis Type="Italic">S</Emphasis>)-2-(2′-methylbenzyl)succinic acid and (<Emphasis Type="Italic">R</Emphasis>)-1-phenylethylamine

The optically pure 2-(2′-methylbenzyl)succinic acid were obtained by the optical resolution of the racemates with the chiral host 1-phenylethylamine. The structure of the salt complex between (S)-2-(2′-methylbenzyl)succinic acid and (R)-1-phenylethylamine was first elucidated by X-ray analysis: Monoclinic, Space group P2₁ with a=6.0781(12) ?, b=8.8224(18) ?, c=17.675(4) ?, β=97.64(3)°, V=939.4(3) ?³, Z=2, the absolute structure parameter is 0 (9). The crystal structure indicates that the hydrogen bonds are formed between the acetate anions and the protonated amino group. The intermolecular hydrogen bond links the salt complex into a quasi-two-dimentional netlike structure.     

Crystal structures of N-(2-aminoethyl)-1-naphthaleneneacetamide nitrate and hydrogen tartrate dihydrate

Nitrate (1): C₁₄H₁₇N₂O⁺·NO ₃ ^– , orthorhombic, Pbca,Z=8,a=9.6924(4),b=27.664(2) andc=10.8589(6)Å.Hydrogen tartrate dihydrate (2): C₁₄H₁₇N₂O⁺·C₄H₅O ₆ ^– ·2H₂O, orthorhombic, P2₁2₁2₁,Z=4,a=7.6703(5),b=7.9368(4) andc=31.953(2)Å. In the solid state, cation conformation differ due to molecular flexibility, very different anionic environments, and resultant hydrogen bonding patterns. Despite these differences, the two structures maintain the same separations (about 7.35 Å) of the two most distant potential pharmacophoric groups, i.e., the aromatic ring and the protonated amine group.     

Crystal and molecular structure of 5,6-diphenyl-2-(α-formyl-benzyliden)-2H-thiopyranes

The crystal and molecular structure of the title compound has been determined by X-ray diffraction techniques. It crystallizes in the monoclinic space group P2₁/n with cell parameters a = 6.101(3) Å, b = 14.365(6) Å, c = 21.888(7) Å, β = 90.20(4)°, Z = 4. The structure was solved by direct methods and refined by least-squares calculations to an R value of 0.074. The molecule exists in solid state in the Z configuration. The very short intramolecular O S distance of 2.654(8) Å can be explained with polar interactions between the O and S atoms.     

Crystal and molecular structure of the bidentate ligand 2,2-di(1-pyrazolyl)propane,CH3C(C3N2H3)2CH3

The title compound lies on a site of C₂ symmetry, with the two planar pyrazolyl moieties oriented at 86.1° to one another. The hydrogen atoms were located and refined.     

Synthesis Characterization and Crystal Structure of 2-(3,4,5-trimethoxyphenyl)-1-(4-fluorophenyl)-4,5-diphenyl-1H-imidazole

The title compound, C₃₀H₂₅FN₂O₃, was prepared from the four-component one-pot condensation reaction and the product crystallized using dimethylformamide. The structure of the compound was established by elemental analysis, Fourier transform infrared spectroscopy (FTIR), thermogravimetric analysis (TGA), UV-Visible, and single-crystal X-ray diffraction. The compound crystallizes in the triclinic crystal system with the space group Pī, with unit cell parameters a = 10.286(2) Å, b = 11.795(2) Å, c = 21.331(4) Å, α = 100.270(3)°, β = 90.093(3)°, γ = 90.062(3)°, and Z = 4. The crystal and molecular structure of the title molecule is stabilized by intra-molecular interactions of types C–H···N and C–H···O.