Expanding the genetic alphabet: non-epimerizing nucleoside with the pyDDA hydrogen-bonding pattern

6-Amino-3-(2'-deoxy-beta-D-ribofuranosyl)-5-nitro-1H-pyridin-2-one (4), a C-glycoside exhibiting the nonstandard pyDDA hydrogen-bonding pattern, was synthesized via Heck coupling. The nitro group greatly enhances the stability of the nucleoside toward acid-catalyzed epimerization without leading to significant deprotonation of the heterocycle at physiological pH. These results make nucleoside 4 a promising candidate for an expanded genetic alphabet.     

Synthesis of an ethidium nucleoside and its acyclic analog

The protected ethidium nucleosides 8-(3′,5′-di-O-benzoyl-2′-deoxy-d-ribofuranosyl)-3-acetamido-5-ethyl-6-phenyl-phenanthridinium (5), 8-(3′,5′-di-O-acetyl-2′-deoxy-d-ribofuranosyl)-3-acetamido-5-ethyl-6-phenyl-phenanthridinium (6), and the acyclic analog 8-[(3R)-1,3-dihydroxy-4-yl]-acetamido-3-amino-5-ethyl-6-phenyl-phenanthridinium (3) were prepared. Based on to their different stability, only the acyclic derivative 3 seems to be suitable for oligonucleotide synthesis. Furthermore, the acyclic ethidium nucleoside analog 3 exhibits comparable absorption and emission properties of the underivatized ethidium (1).     

Synthesis of tritium-labeled nucleoside 5′-triphosphates and nucleoside 5′-diphosphates

Tritium-labeled nucleoside 5′-triphosphates (NTPs) nucleoside 5′-diphosphates (NDPs) containing the tritium label in positions 8 (in the purine nucleus) and 5 (in the pyrimidine nucleus) have been obtained by the dehalogenation of the corresponding bromine derivatives with gaseous tritium. The dehalogenation of the Br-NTPs and Br-NDPs was carried out at atmospheric pressure in an aqueous alkaline medium using palladium catalysts (5% Pd/BaSO₄ or α-Pd). The possibility of introducing a tritium label into nucleotides of the adenine series by the heterogenecus isotope exchange reaction with gaseous tritium in the presence of 5% Pd/BaSO₄ has been investigated. For the compounds synthesized, the compositions of the eluents used for the chromatographic isolation of the desired products are given. The molar activities of the compounds synthesized were between 370 and 740 TB_q/mole (10–20 kCi/mole).     

Synthesis of an acyclic nucleoside analog of highly fluorescent luminarosine

Photoirradiation of 1-{9-[(2-acetoxyethoxy)methyl]-9H-purin-6-yl}-pyridinium chloride (1b) in aqueous solution leads to two photoproducts, namely 1-{5-formamido-6-[(2-acetoxyethoxy)methylamino]pyrimidin-4-yl}pyridinium chloride (2b) and 1-(6-(acetoxymethyl)-5,5a,6,8-tetrahydrooxazolo[4,3-e]purin-4-yl)pyridinium chloride (6), which constitutes a new heterocyclic system. Further, photosensitized irradiation of 2b gave the desired acyclic nucleoside analog of the highly fluorescent luminarosine 3b.     

Synthesis of 5-ethylpyrimidine nucleoside analogs

This paper describes the synthesis of acyclic, cyclic, and deoxy sugar nucleosides of 5-ethylpyrimidine, i.e., i) 1-(2-hydroxyethoxymethyl), 1-(2-methoxyethoxymethyl), and 1-ethoxyethyl derivatives of 5-ethyl-uracil and 5-ethylcytosine, ii) 5-ethyl-1-(tetrahydro-2H-pyran-2-yl)- and -1-(tetrahydrofuran-2-yl)uracils, and iii) 5-ethyl-2′-deoxyuridine.     

Synthesis and properties of DNA containing a spore photoproduct analog

The spore photoproduct is a unique photolesion, formed in spores upon irradiation with UV light; to investigate the properties of spore photoproduct containing DNA we have synthesized 5S and 5R lesion analogs and incorporated them into DNA.     

Synthesis and properties of a bilirubin analog with propionic acid groups replaced by carboxyl

The unnatural bile pigment analog of bilirubin-IXα, 2,3,7,13,17,18-hexamethyl-(10H,21H,23H,24H)-bilin-1,19-dione-8,12-dicarboxylic acid (1), was synthesized as its diethyl ester by coupling 4,4′-dimethyl-3,3′-dicarboethoxydipyrrylmethane-5,5′-dialdehyde with 3,4-dimethylpyrrolin-2-one.     

Synthesis of fluorinated acyclic nucleoside phosphonates with 5-azacytosine base moiety

With respect to the strong antiviral activity of (S)-1-[3-hydroxy-2-(phosphonomethoxy)propyl]-5-azacytosine various types of its side chain fluorinated analogues were prepared. The title compound, (S)-1-[3-fluoro-2-(phosphonomethoxy)propyl]-5-azacytosine (FPMP-5-azaC) was synthesised by the condensation reaction of (S)-2-[(diisopropoxyphosphoryl)methoxy)-3-fluoropropyl p-toluenesulfonate with a sodium salt of 5-azacytosine followed by separation of appropriate N¹ and O² regioisomers and ester hydrolysis. Transformations of FPMP-5-azaC to its 5,6-dihydro-5-azacytosine counterpart, amino acid phosphoramidate prodrugs and systems with an annelated five-membered imidazole ring, i.e. imidazo [1,2-a][1,3,5]triazine derivatives were also carried out. 1-(2-Phosphonomethoxy-3,3,3-trifluoropropyl)-5-azacytosine was prepared from 5-azacytosine and trifluoromethyloxirane to form 1-(3,3,3-trifluoro-2-hydroxypropyl)-5-azacytosine which was treated with diisopropyl bromomethanephosphonate followed by deprotection of esters. Antiviral activity of all newly prepared compounds was studied. FPMP-5-azaC diisopropyl ester inhibited the replication of herpes viruses with EC₅₀ values that were about three times higher than that of the reference anti-HCMV drug ganciclovir without displaying cytotoxicity.     

Synthesis of 5'-amino-5'-phosphonate analogues of pyrimidine nucleoside monophosphates

The 5'-amino-5'-phosphono derivatives of cytidine, cytosine arabinoside (ara-C), and uridine have been prepared via the corresponding nucleoside aldehydes. Phosphite addition to imines derived from the nucleoside aldehydes and p-methoxybenzylamine was efficient, and use of this amine allowed cleavage of the products to the parent amino phosphonic acids. The phosphite additions proved to be diastereoselective, with the cytidine and uridine derivatives favoring the 5'S stereochemistry and the ara-C derivative favoring the 5'R isomer. The stereochemistry of one cytidine derivative was established by single-crystal diffraction analysis, and detailed comparisons of the (13)C NMR data allowed assignments of the other amino phosphonates.     

Spiropyrans and spirooxazines. 2. Synthesis,structures, and photochromic properties of 6"-cyano-substituted spironaphthooxazines

A series of 6"-cyano-substituted spiro[indoline-2,3"-naphtho[2,1-b]oxazines] containing substituents with carbon chains of different lengths in the indoline fragment were synthesized. The structure of one of these spironaphthooxazines was established by X-ray diffraction analysis. The influence of substituents on the photochromic properties of the resulting compounds in solutions and polymeric films was studied.     

Synthesis of some analogues of nucleoside 5′-triphosphates

Reaction of propane -1,3- disulphonyl chloride with the appropriate 5' - amino - 5'.- deoxyribonucleoside gave 5' - deoxy -5′-(3- sulphopropanesulpho5' - Deoxy - 5' - p- sulphaminobenzenesulphonylaminothymidine (8) was obtained by treatment of 5' - p- aminobenzenesulphonylamino - 5' -deoxythymidine (10) with SO₃,-triethylamine. This reaction gave also some 5'-p- aminobenzenesulphonylamino - 5' - deoxy - 3' - O - sulphothymidine (12). Compounds 2 and 3 were inactive when tested for inhibitory activity against E.coli RNA polymerase holoenzyme. Compounds 1 and 8 inhibited E.coli DNA polymerase I non-competitively at relatively high concentrations. Compound 4 was without significant inhibitory activity against HSV-1 DNA polymerase.     

Synthesis of 16-isochiogralactone and its 5α-hydroxy analog

Conclusions Syntheses are reported for 16-isochiogralactone, its 5-hydroxy analog, and 5-hydroxy-6-ketosteroids with unsaturated lactone E rings.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, Mo. 6, pp. 1437–1440, June, 1985.     

Synthesis of a bicyclic double-headed nucleoside

An attempt of preparing a carbocyclic LNA-analogue using different RCM-methods failed. However, a compound with a hemiacetal linker between the C2′ and the C4′-positions was isolated and found to be a suitable substrate for making a conformationally restricted double-headed nucleoside. This contains two uracil nucleobases organized on a bicyclic skeleton and is locked in an N-type conformation.     

One-pot synthesis of nucleoside 5'-triphosphates from nucleoside 5'-H-phosphonates

Nucleoside 5'-triphosphates (NTPs) play key roles in biology and medicine. However, these compounds are notoriously difficult to synthesize. We describe a one-pot method to prepare NTPs from nucleoside 5'-H-phosphonate monoesters via pyridinium phosphoramidates, and we used this approach to synthesize ATP, UTP, GTP, CTP, ribavirin-TP, and 6-methylpurine ribonucleoside-TP (6MePTP). Poliovirus RNA-dependent RNA polymerase efficiently employed 6MePTP as a substrate, suggesting that the cognate nucleoside, a poorly understood antiviral agent, may damage viral RNA.