Self-metalation of 2H-tetraphenylporphyrin on Cu(111): an x-ray spectroscopy study

The bonding and the temperature-driven metalation of 2H-tetraphenylporphyrin (2H-TPP) on the Cu(111) surface under ultrahigh vacuum conditions were investigated by a combination of x-ray photoelectron spectroscopy (XPS) and near-edge x-ray absorption fine structure (NEXAFS) spectroscopy with density functional theory calculations. Thin films were prepared by organic molecular beam epitaxy and subsequent annealing. Our systematic study provides an understanding of the changes of the spectroscopic signature during adsorption and metalation. Specifically, we achieved a detailed peak assignment of the 2H-TPP multilayer data of the C1s and the N1s region. After annealing to 420 K both XPS and NEXAFS show the signatures of a metalloporphyrin, which indicates self-metalation at the porphyrin-substrate interface, resulting in Cu-TPP. Furthermore, for 2H-TPP monolayer samples we show how the strong influence of the copper surface is reflected in the spectroscopic signatures. Adsorption results in a strongly deformed macrocycle and a quenching of the first NEXAFS resonance in the nitrogen edge suggesting electron transfer into the LUMO. For Cu-TPP the spectroscopic data indicate a reduced interaction of first-layer molecules with the substrate as demonstrated by the relaxed macrocycle geometry.     

Adsorption and charge transfer dynamics of bi-isonicotinic acid on Au(111)

The interaction of bi-isonicotinic acid (4,4(')-dicarboxy-2,2(')-bipyridine) with the Au(111) surface has been investigated using electron spectroscopic techniques. Near edge x-ray absorption fine structure (NEXAFS) spectra show that monolayers of the molecule lie flat to the surface and also reveal that the monolayer is sensitive to the preparation conditions employed. Core level x-ray photoelectron spectroscopy (XPS) shows that the adsorbed molecule does not undergo deprotonation upon adsorption. The "core-hole clock" implementation of resonant photoemission has been used to probe the coupling between molecule and substrate. This technique has revealed the possibility of ultrafast backtransfer from the substrate into the molecule upon resonant excitation of a N 1s core level electron. This is supported by a NEXAFS and XPS investigation of energy level alignments in the system.     

Human fibrinogen adsorption onto single-walled carbon nanotube films

The adsorption behavior of human fibrinogen (Hfg) on single-walled carbon nanotube (SWNT) films was investigated using scanning electron microscopy (SEM) and near edge X-ray absorption fine structure (NEXAFS) spectroscopy. It was shown in the SEM images that fibrinogen was adsorbed strongly on the surface of SWNT when the samples were incubated in the Hfg solutions for 10 min. The dependence of adsorption on the concentration of fibrinogen was also investigated and it was found that adsorption increased with increasing concentration. In order to further explore the adsorption of fibrinogen on SWNT surface, NEXAFS spectra were obtained at the N K-edge and the C K-edge. The results confirmed the conclusion regarding the dependence of adsorption on fibrinogen concentration. It is demonstrated that, due to its high sensitivity to the surface elements, NEXAFS spectroscopy is a powerful tool to investigate the adsorption of fibrinogen on SWNT films.     

Structure, morphology and interface properties of ultrathin SnTTBPP(OH)2-films adsorbed on Ag(100)

The molecular interaction of dihydroxo[5,10,15,20-tetrakis(4-tert-butyl-phenyl)porphyrinato]-tin(IV) (SnTTBPP(OH)(2)), the structural order and growth of ultrathin films on Ag(100) have been studied by means of low-energy electron diffraction (LEED) and synchrotron based photoelectron spectroscopy, i.e., X-ray photoemission (XPS) and near-edge X-ray absorption fine structure (NEXAFS/XANES) spectroscopy. For the first time, monolayer adsorption of a metalloporphyrin with octahedral coordination of the metal center by two additional axial hydroxo ligands is investigated in a multi-technique study. The delicate balance of molecule-substrate interactions and intermolecular interactions leads to the formation of a densely-packed organic monolayer which is commensurate with the Ag(100) substrate. From NEXAFS linear dichroism an almost coplanar orientation of the porphyrin system is derived. XPS and NEXAFS clearly indicate that the axial hydroxo ligands are cleaved in monolayer films, i.e., upon adsorption to the Ag substrate. With increasing film thickness orientational order gets lost and leads to polycrystalline growth for thicker films as confirmed by scanning X-ray transmission microscopy (STXM).     

Molecular orientation of terephthalic acid assembly on epitaxial graphene: NEXAFS and XPS study

The adsorption of terephthalic acid molecules [C(6)H(4)(COOH)(2)), TPA] on a single layer of graphene grown epitaxially on Ni(111) has been investigated by means of near-edge X-ray absorption fine structure (NEXAFS) spectroscopy and X-ray photoelectron spectroscopy (XPS) at room temperature. The assignment of the NEXAFS resonances was aided by ab initio calculations for the free TPA molecule. For coverages up to a monolayer the molecular plane of TPA adopts a parallel orientation with regard to the epitaxial graphene (EG) layer. Deprotonation of TPA molecules at one monolayer coverage can be excluded. For TPA multilayers, the molecular plane is tilted on average by approximately 45° with respect to the sample surface.     

Phenylacetylene adsorption on Rh(1 0 0): a photoemission and photoabsorption investigation

A joint X-ray photoelectron spectroscopy (XPS) and near edge X-ray absorption fine structure (NEXAFS) investigation of the adsorption of phenylacetylene (PA, C₆H₅CCH) on the surface of Rh(1 0 0) single crystal was carried out by evaporating PA on the clean metal surface in the monolayer and multilayer regimes.

The experimental results indicate that the interaction of the PA molecule with the Rh(1 0 0) surface involves mainly the two carbon atoms of the alkyne moiety; the binding of the alkyne group to the metal surface produces the opening of the triple bond. A comparison with the results obtained for PA adsorption on the surface of Pt (1 1 1) and Cu (1 0 0) is also discussed.     

A theoretical study of the XP and NEXAFS spectra of alanine: gas phase molecule, crystal, and adsorbate at the ZnO(10 ̅10) surface

The adsorption of alanine on the mixed-terminated ZnO(10 ?10) surface is studied by means of quantum-chemical ab initio calculations. Using a finite cluster model and the adsorption geometry as obtained both by periodic CPMD and embedded cluster calculations, the C1s, N1s and O1s X-ray photoelectron spectra (XPS) and near-edge X-ray absorption fine structure (NEXAFS) spectra are calculated for single alanine molecules on ZnO(10 ?10). These spectra are compared with the spectra calculated for alanine in the gas phase and in its crystalline form and with experimental XPS and NEXAFS data for the isolated alanine molecule and for alanine adsorbed on ZnO(10 ?10) at multilayer and monolayer coverage. The excellent agreement between the experimental and calculated XP and NEXAFS spectra confirms the calculated adsorption geometry: A single alanine molecule is bound to ZnO(10 ?10) in a dissociated bidentate form with the two O atoms of the acid group bound to two Zn atoms of the surface and the proton transferred to one O atom of the surface. Other possible structures, such as adsorption of alanine in one of its neutral or zwitterionic forms in which the proton of the -COOH group remains at this group or is transferred to the amino group, can be excluded since they would give rise to quite different XP spectra. In the multilayer coverage regime, on the other hand, alanine is in its crystalline form as is also shown by the analysis of the XP spectra.     

Structure of tert-butyl carbamate-terminated thiol chemisorbed to gold

Monolayers of tert-butyl carbamate-terminated thiol were formed by adsorption of the molecules onto polycrystalline gold substrate. The adsorbates were studied using techniques as X-ray photoelectron spectroscopy (XPS), near-edge X-ray absorption fine structure spectroscopy (NEXAFS), and infrared reflection-absorption spectroscopy (IRAS). The results provide the electronic structure, composition, characteristic fingerprint, and orientation of the molecular adsorbate. XPS verified that the thiolate group is chemically bonded to the gold surface and that a complete chemisorption of the molecule occurs. Elemental depth profiling by varying the excitation energy in XPS supports the angle-dependent XPS results. Both techniques showed that the tert-butyl group is oriented away from the gold surface. A nearly parallel orientation of the carbonyl group relative to the gold surface is deduced from the IRAS results. The main molecular axis is estimated to have an average tilt angle of about 38 degrees relative to the gold surface normal on the basis of the NEXAFS results. Cyclic voltammetry indicates a less blocking capability of the adsorbates. Overall, the molecules are oriented in an upright manner with indications of presence of pinholes and/or defects possibly due to steric hindrance of the bulky tert-butyl group. This molecular system is envisioned to be of use for surface-based organic synthesis on gold substrates.     

Self-assembled monolayers of benzylmercaptan and p-cyanobenzylmercaptan on Au(111) surfaces: structural and spectroscopic characterization

The formation of self-assembled monolayers of benzylmercaptan (BM) and p-cyanobenzylmercaptan (pCBM) on Au(111) surfaces is investigated by a combination of X-ray photoelectron spectroscopy (XPS), near-edge X-ray absorption fine structure (NEXAFS), and scanning tunneling microscopy (STM). The NEXAFS results of pCBM are supported by ab initio calculations. It is found that BM as well as pCBM form well-ordered monolayers with the molecules oriented almost perpendicular to the surface. BM forms a ( radical 3 x radical 3)R30 degrees structure whereas pCBM forms a slightly different c(7 x 7) hexagonal structure. No phase separation is detected for the adsorption of a 1:1 mixture of the two molecules. The implications of the results for the covalent attachment of transition-metal complexes to thiol-functionalized surfaces are discussed.     

Bonding and structure of glycine on ordered Al2O3 film surfaces

The interaction between glycine (NH2CH2COOH) layers and an ultrathin Al2O3 film grown epitaxially onto NiAl(110) was studied by temperature-programmed desorption, X-ray photoelectron spectroscopy, ultraviolet photoelectron spectroscopy, work function measurements, and near-edge X-ray absorption fine structure (NEXAFS) spectroscopy. At monolayer coverages at 110 K, there are two coexisting molecular forms: the anionic (NH2CH2COO-) and the zwitterionic form (NH3+CH2COO-) of glycine. As deduced from the photoemission data, the buildup of multilayers at 110 K leads to a condensed phase predominantly in the zwitterionic state. In contrast to the monolayer at 110 K, the monolayer formed at 300 K consists primarily of glycine molecules in the anionic state. The latter species is adsorbed with the oxygen atoms of the carboxylic group pointing toward the substrate. The polarization-dependent C K- and O K-edge NEXAFS spectra indicate that the glycinate species in the monolayer at 300 K is oriented nearly perpendicular to the surface, with the amino group pointing away from the surface.     

Geometric and Electronic Structures of Pyrazine Molecule Chemisorbed on Si(100) Surface by XPS and NEXAFS Spectroscopy

The geometric and electronic structures of several possible adsorption configurations of the pyrazine ({C\begin{document}$ _{4} $\end{document}}{H\begin{document}$ _{4} $\end{document}}{N\begin{document}$ _{2} $\end{document}}) molecule covalently attached to Si(100) surface, which is of vital importance in fabricating functional nano-devices, have been investigated using X-ray spectroscopies. The Carbon K-shell (1s) X-ray photoelectron spectroscopy (XPS) and near-edge X-ray absorption fine structure (NEXAFS) spectroscopy of predicted adsorbed structures have been simulated by density functional theory with cluster model calculations. Both XPS and NEXAFS spectra demonstrate the structural dependence on different adsorption configurations. In contrast to the XPS spectra, it is found that the NEXAFS spectra exhibiting conspicuous dependence on the structures of all the studied pyrazine/Si(100) systems can be well utilized for structural identification. In addition, according to the classification of carbon atoms, the spectral components of carbon atoms in different chemical environments have been investigated in the NEXAFS spectra as well.     

Surface sensitive study to determine the reactivity of soot with the focus on the European emission standards IV and VI

Diesel soot (Euro IV and Euro VI) was investigated with spectroscopic methods such as near-edge X-ray absorption fine structure (NEXAFS) spectroscopy and X-ray photoemission spectroscopy (XPS). C and O K-edge NEXAFS show that structural disorder on the surface is accompanied by a higher amount of oxygen functional groups. O K-edge NEXAFS and O1s XPS results are discussed with the aim to elucidate the nature of the oxygen surface species. The analysis of the data presented here allows the postulation of a hypothetical structure for soot samples emitted by diesel engines.     

Geometric and electronic structures of NO dimer layers on Rh(111) studied with near edge x-ray absorption fine structure spectroscopy: experiment and theory

Adsorption of NO on the Rh(111) surface has been studied in the monolayer, bilayer, and multilayer regimes with near edge x-ray absorption fine structure (NEXAFS) spectroscopy. NO dimer layers are formed on a chemisorbed monomer layer. The polarization dependence in the NEXAFS spectra of the dimer components has contradicted the previous assignments. To determine the structure of the NO dimer layers from the polarization analysis of the NEXAFS spectra, ab initio configuration interaction calculations have been carried out for some low-lying core excited states of the weakly bound NO dimer with cis-ONNO planar geometry. It is revealed that the NO dimers in the multilayer are standing with the N-N bond perpendicular to the surface, while in the second layer they are rather lying on the first monomer layer.     

X-ray spectroscopy study of lithiated graphite obtained by thermal deposition of lithium

X-ray photoelectron spectroscopy (XPS), X-ray emission spectroscopy (XES), and near edge X-ray absorption fine structure (NEXAFS) spectroscopy are used for in situ studies of the electronic structure of lithiated natural graphite produced by thermal deposition of lithium upon graphite in a vacuum. By XPS and NEXAFS spectroscopy it is found that lithium vapor thermal deposition results in the formation of a lithiated graphite surface layer and a change in its electronic structure. Based on the quantum chemical simulation of the experimental СK_α XES spectrum of lithiated graphite, it is found that lithium atoms are located mostly on the edges of graphite crystallites. Atomic force microscopy reveals that the size of natural graphite flakes varies from 50 nm to 200 nm.     

Selective adsorption of atomic hydrogen on a h-BN thin film

The adsorption of atomic hydrogen on hexagonal boron nitride (h-BN) is studied using two element-specific spectroscopies, i.e., near-edge x-ray absorption fine structure (NEXAFS) spectroscopy and x-ray photoelectron spectroscopy (XPS). B K-edge NEXAFS spectra show a clear change in the energy region of the π* band before and after reaction with atomic deuterium. On the other hand, N K-edge NEXAFS spectra show only a little change. B 1s XPS spectra show a distinct component at the low binding energy side of a main component, while N 1s XPS spectra show peak broadening at the high binding energy side. These experimental results are analyzed by the discrete variational Xα method with a core-hole effect and are explained by a model in which hydrogen atoms are preferentially adsorbed on the B sites of h-BN. Based on the experimental and theoretical results, we propose a site-selective property of BN material on adsorption of atomic hydrogen.     

Core level study of alanine and threonine

Core level X-ray photoemission spectra (XPS) and near edge X-ray absorption fine structure (NEXAFS) spectra of alanine and threonine in the gas phase have been measured at the carbon, nitrogen, and oxygen K edges and interpreted in the light of theoretical calculations. For the computations, a set of approximations is made which allows sufficiently accurate calculations of several conformers to be performed in reasonable computing time. The accuracy has been checked by comparing results obtained for proline to our previous, higher level calculations. The photoemission spectra at the carbon and oxygen edges are assigned and compared. The nitrogen 1s photoemission peaks show anomalous broadening which we relate to the populations and types of conformers. The carbon K-edge NEXAFS spectra of alanine and threonine are compared with our previous data on glycine and resonances assigned accordingly. The nitrogen K-edge NEXAFS spectra of alanine and threonine do not show measurable effects due to the population of conformers, in contrast to the photoemission results. At the oxygen K edge, the spectra of these amino acids are similar with two prominent peaks assigned to transitions of O 1s electrons from the oxo and hydroxyl groups to vacant pi* and sigma* orbitals and additional intensity for threonine due to the second OH group. Conformer effects are observable in photoemission but appear to be more difficult to resolve in photoabsorption. We explain this by energetic shifts of opposite sign for the core hole states and unoccupied orbitals, which causes partial cancelation in NEXAFS but not in photoemission.     

Orientation of pentacene molecules on SiO2: from a monolayer to the bulk

Near edge x-ray absorption fine structure (NEXAFS) spectroscopy is used to study the orientation of pentacene molecules within thin films on SiO2 for thicknesses ranging from monolayers to the bulk (150 nm). The spectra exhibit a strong polarization dependence of the pi* orbitals for all films, which indicates that the pentacene molecules are highly oriented. At all film thicknesses the orientation varies with the rate at which pentacene molecules are deposited, with faster rates favoring a thin film phase with different tilt angles and slower rates leading to a more bulklike orientation. Our NEXAFS results extend previous structural observations to the monolayer regime and to lower deposition rates. The NEXAFS results match crystallographic data if a finite distribution of the molecular orientations is included. Damage to the molecules by hot electrons from soft x-ray irradiation eliminates the splitting between nonequivalent pi* orbitals, indicating a breakup of the pentacene molecule.     

UPS, XPS, and NEXAFS study of self-assembly of standing 1,4-benzenedimethanethiol SAMs on gold

We report a study of the self-assembly of 1,4-benzenedimethanethiol monolayers on gold formed in n-hexane solution held at 60 °C for 30 min and in dark conditions. The valence band characteristics, the thickness of the layer, and the orientation of the molecules were analyzed at a synchrotron using high resolution photoelectron spectroscopy and near edge X-ray adsorption spectroscopy. These measurements unambiguously attest the formation of a single layer with molecules arranged in the upright position and presenting a free -SH group at the outer interface. Near edge X-ray absorption fine structure (NEXAFS) measurements suggest that the molecular axis is oriented at 24° with respect to the surface normal. In addition, valence band features could be successfully associated to specific molecular orbital contributions thanks to the comparison with theoretically calculated density of states projected on the different molecular units.     

Adsorption and orientation kinetics of self‐assembled films of octadecyltrimethoxysilane on aluminium oxide surfaces

X‐ray photoelectron spectroscopy (XPS) and near‐edge x‐ray absorption fine structure (NEXAFS) spectroscopy have been used to study the time‐dependent adsorption and molecular orientation behaviour of octadecyltrimethoxysilane (ODTMS) on native aluminium oxide surfaces. By measuring the adsorption isotherm using XPS, we show that ODTMS molecules exhibit oscillatory adsorption. The oscillatory adsorption behaviour for ODTMS is analogous to that observed for its simpler short‐chain ‘cousin’—propyltrimethoxysilane (PTMS)—and suggests that the length of the functional alkyl chain on an organosilane does not have a significant influence upon the oscillatory adsorption mechanism. The oscillation in the ODTMS adsorption isotherm shows a maximum and a minimum in coverage at an adsorption time of ～30 and ～65 s, respectively, for a 0.75% ODTMS solution in a 90% ethanol–10% water mixture at pH 4. The time‐dependent orientation behaviour of the ODTMS molecules during adsorption was examined using angular‐dependent carbon K‐edge NEXAFS spectroscopy. We show that the alignment of the ODTMS film changes systematically with deposition time and appears to be correlated with coverage measurements obtained using XPS. In particular, by combining the XPS and NEXAFS results we demonstrate that the minimum ODTMS coverage corresponds to a film whose alignment appears to be predominantly randomized. Copyright © 2005 John Wiley & Sons, Ltd.     

Ni/Pt(111) bimetallic surfaces: unique chemistry at monolayer ni coverage.

We have utilized the dehydrogenation and hydrogenation of cyclohexene as probe reactions to compare the chemical reactivity of Ni overlayers that are grown epitaxially on a Pt(111) surface. The reaction pathways of cyclohexene were investigated using temperature-programmed desorption, high-resolution electron energy loss (HREELS), and near edge X-ray absorption fine structure (NEXAFS) spectroscopy. Our results provide conclusive spectroscopic evidence that the adsorption and subsequent reactions of cyclohexene are unique on the monolayer Ni surface as compared to those on the clean Pt(111) surface or the thick Ni(111) film. HREELS and NEXAFS studies show that cyclohexene is weakly pi-bonded on monolayer Ni/Pt(111) but di-sigma-bonded to Pt(111) and Ni(111). In addition, a new hydrogenation pathway is detected on the monolayer Ni surface at temperatures as low as 245 K. By exposing the monolayer Ni/Pt(111) surface to D2 prior to the adsorption of cyclohexene, the total yield of the normal and deuterated cyclohexanes increases by approximately 5-fold. Furthermore, the reaction pathway for the complete decomposition of cyclohexene to atomic carbon and hydrogen, which has a selectivity of 69% on the thick Ni(111) film, is nearly negligible (<2%) on the monolayer Ni surface. Overall, the unique chemistry of the monolayer Ni/Pt(111) surface can be explained by the weaker interaction between adsorbates and the monolayer Ni film. These results also point out the possibility of manipulating the chemical properties of metals by controlling the overlayer thickness.