Three-Component Synthesis of 5-Arylmethylene-3-benzoylmethylenepiperazine-2,6-diones

Russian Journal of General Chemistry -     

Identification of potential influenza virus endonuclease inhibitors through virtual screening based on the 3D-QSAR model

Influenza endonucleases have appeared as an attractive target of antiviral therapy for influenza infection. With the purpose of designing a novel antiviral agent with enhanced biological activities against influenza endonuclease, a three-dimensional quantitative structure-activity relationships (3D-QSAR) model was generated based on 34 influenza endonuclease inhibitors. The comparative molecular similarity index analysis (CoMSIA) with a steric, electrostatic and hydrophobic (SEH) model showed the best correlative and predictive capability (q ² = 0.763, r ² = 0.969 and F = 174.785), which provided a pharmacophore composed of the electronegative moiety as well as the bulky hydrophobic group. The CoMSIA model was used as a pharmacophore query in the UNITY search of the ChemDiv compound library to give virtual active compounds. The 3D-QSAR model was then used to predict the activity of the selected compounds, which identified three compounds as the most likely inhibitor candidates.     

Synthesis and in vitro antitumor activity of substituted anthracene-1,4-diones

Based on a rational approach, 6-substituted 1,4-anthracenediones were synthesized and found to exhibit potent cytotoxic activity against murine and human leukemic cells. The synthetic sequence includes a double Friedel-Crafts reaction, reductive quinone formation, and selective bromination of the alkyl side chain. A key intermediate, 6-bromomethyl-1,4-anthracenedione (10), was synthesized and converted to various active antitumor agents, including a water-soluble phosphate ester pro-drug. The interconversion reactions include displacement of the bromide with various nucleophiles and basic hydrolysis to the alcohol and subsequent oxidation to provide the aldehyde. Based on their ability to decrease L1210 and HL-60 tumor cell viability, 1,4-dihydroxyanthraquinones are inactive but 1,4-anthracenediones have interesting antitumor activity, which may be abolished by modification of the A-ring and improved by substitution of the C-ring. The cytostatic and cytotoxic activity of the representative compound 10 was verified at the National Cancer Institute in studies on the 60-human tumor cell line panel in the in vitro antitumor screening. A wide spectrum of tumor cells are sensitive to 10 inhibition, and concentrations required to inhibit tumor cell growth by 50% (GI₅₀) at 48 h are <10 nM in HL-60 and MOLT-4 and 37.1 nM in SR leukemia. Preliminary studies suggest that the molecular targets and mechanisms of action of 10 may be different from those of daunomycin.     

Synthesis of substituted pyrrolo[2,3-D]pyrimidine-2,4-diones

A facile route for the synthesis of substituted pyrrolo[2,3-d]pyrimidine-2,4-diones from substituted 2-amino-3-cyano-4-methylpyrroles is reported.     

Synthesis of fully substituted polyhydroxylated pyrrolizidines via Cope-House cyclization

Total synthesis of the proposed structure of (-)-hyacinthacine C(5) and its epimers at C6 and C7 is described. A key step of the synthesis was the construction of the bicyclic pyrrolizidine system by means of a nucleophilic addition of a dithiane to a cyclic nitrone followed by a Cope-House cyclization.     

Synthesis of 4-aryl-1,7-dihydroxyalkane-2,6-diones under aldol reaction conditions

Reactions of 3-hydroxyalkan-2-ones with (hetero)aromatic aldehydes under basic conditions lead to 4-aryl-1,7-dihydroxyalkane-2,6-diones. These products were also synthesized by dismutation of 4-aryl-1-hydroxyalk-3-ene-2-ones. The reactions proceed as tandem retro aldol reactions and the Michael addition.     

Further investigations of the interaction of trimethylsilyl azide with substituted maleic anhydrides. Synthesis of 4- and 5-aryl substituted 1,3-(3H)oxazine-2,6-diones

The reactions of phenyl-, o-chlorophenyl-, p-chlorophenyl-, 3,4-dichlorophenyl-, p-fluoro- and p-anisylmaleic anhydrides with trimethylsilyl azide are described. In all cases mixtures of isomeric 4- and 5-aryl-2H-1,3-(3H)oxazine-2,6-diones are obtained after hydrolysis with the 4-isomer predominating. The yield of 5-isomer is greatest for o-chlorophenyl maleic anhydride, and substantial for other arylmaleic anhydrides, indicating increased importance of steric effects in these reactions, in contrast to previously reported syntheses of methyl and halo-substituted oxazine-diones, where electronic factors appeared dominant.     

几类4－取代苄基－2，6－哌嗪二酮的合成

介绍了４类具有络合性质或潜在的络合性质的４－取代苄基－２，６－哌嗪二酮化合物的合法。所合成的化合物中有些表现出明显的体外抑制白血细胞Ｐ３８８生长的活性。     

Synthesis of substituted esters of imidazoles,oxazoles, thiazoles,and diethyl pyrazine-2,5-dicarboxylate from a common acyclic precursor employing C-formylation strategy

A novel synthetic route to substituted esters of imidazoles, oxazoles, thiazoles, and diethyl pyrazine-2,5-dicarboxylates via C-formylation of glycine ethyl ester hydrochloride is reported. This methodology is simple, robust, and gives good yields of different heterocyclic esters in one or two steps from a common acyclic precursor and is amenable to large scale synthesis.     

Synthesis,structural characterization,and anion interactions of new triazole-linked urea derivative fully substituted cyclotriphosphazene compounds

Three novel fully substituted urea derivative cyclotriphosphazene compounds 5–7 were synthesized by alkyne-azide 1,3-dipolar cycloaddition reaction of propargyl substituted ureas 2–4 with hexaazide substituted cyclotriphosphazene 1 in the presence of Cu(I) catalyst. All compounds were characterized with spectroscopic techniques such as FT-IR, ¹H, ¹³C, and ³¹P nuclear magnetic resonance and mass spectroscopy. Also, the usefulness of compounds 5–7 as anion carriers was investigated by ¹H NMR spectroscopy. For this purpose, ¹H NMR spectra of compounds 5–7 were recorded in the presence of tetrabutylammonium fluoride in DMSO-d₆. It was determined, that the urea protons in the compounds interact with fluoride.     

Synthesis,structutre and biological activity of substituted [16α,17α]cyclopropapregn-4-ene-3,20-diones

Aryldiazomethanes generated by vacuum thermolysis of arenecarbaldehyde tosylhydrazone sodium salts react stereospecifically with 16-dehydropregnenolone acetate. Subsequent decomposition of the pyrazoline adducts yielded hitherto unknown substituted [16α,17α]-cyclopropaprogesterones bearing the aryl substituents at the position 3′. Interaction of such cyclopropaprogesterones with progesterone receptor from rat uterine cytosol was studied.     

Synthesis of derivatives of pyrazine-2,3-dicarboxylic acids and pyrazine-2,3-dicarbonamides from 2,3-dichloroquinoxaline

The synthesis of dimethyl 2,3-dichloropyrazine-5,6-dicarboxylate from dichloroquinoxaline has been effected. The nucleophilic substitution reactions of the compound obtained have been studied.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 11, pp. 1548–1551, November, 1973.     

Structure-based virtual screening of influenza virus RNA polymerase inhibitors from natural compounds: Molecular dynamics simulation and MM-GBSA calculation

The resistances of matrix protein 2 (M2) protein inhibitors and neuraminidase inhibitors for influenza virus have attracted much attention and there is an urgent need for new drug. The antiviral drugs that selectively act on RNA polymerase are less prone to resistance and possess fewer side effects on the patient. Therefore, there is increased interest in screening compounds that can inhibit influenza virus RNA polymerase. Three natural compounds were found by using molecular docking-based virtual screening, which could bind tightly within the polymerase acidic protein-polymerase basic protein 1 (PA-PB1) subunit of influenza virus polymerase. Firstly, their drug likeness properties were evaluated, which showed that the hepatotoxicity values of all the three compounds indicating they had less or no hepatotoxicity, and did not have the plasma protein biding (PPB) ability, the three compounds needed to be modified in some aspects, like bulky molecular size. The stability of the complexes of PA-hits was validated through molecular dynamics (MD) simulation, revealing compound 2 could form more stable complex with PA subunit. The torsional conformations of each rotatable bond of the ligands in PA subunit were also monitored, to investigate variation in the ligand properties during the simulation, compound 3 had fewer rotatable bonds, indicating that the molecule had stronger rigidity. The bar charts of protein–ligand contacts and contacts over the course of trajectory showed that four key residues (Glu623, Lys643, Asn703 and Trp706) of PA subunit that participated in hydrogen-bond, water bridge and hydrophobic interactions with the hit compounds. Finally, the binding free energy and contributed energies were calculated by using MM-GBSA method. Out of the three compounds, compound 1 showed the lowest total binding free energy. Among all the interactions, the contribution of the covalent binding and the van der Waals energy were more than other items, compound 1 formed more stable hydrogen bonds with the residues of PA subunit binding pocket. This study smoothed the path for the development of novel lead compounds with improved binding properties, high drug likeness, and low toxicity to humans for the treatment of influenza, which provided a good basis for further research on novel and effective influenza virus PA-PB1 interaction inhibitors.     

QSAR analyses on avian influenza virus neuraminidase inhibitors using CoMFA, CoMSIA, and HQSAR

The recent wide spreading of the H5N1 avian influenza virus (AIV) in Asia, Europe and Africa and its ability to cause fatal infections in human has raised serious concerns about a pending global flu pandemic. Neuraminidase (NA) inhibitors are currently the only option for treatment or prophylaxis in humans infected with this strain. However, drugs currently on the market often meet with rapidly emerging resistant mutants and only have limited application as inadequate supply of synthetic material. To dig out helpful information for designing potent inhibitors with novel structures against the NA, we used automated docking, CoMFA, CoMSIA, and HQSAR methods to investigate the quantitative structure-activity relationship for 126 NA inhibitors (NIs) with great structural diversities and wide range of bioactivities against influenza A virus. Based on the binding conformations discovered via molecular docking into the crystal structure of NA, CoMFA and CoMSIA models were successfully built with the cross-validated q (2) of 0.813 and 0.771, respectively. HQSAR was also carried out as a complementary study in that HQSAR technique does not require 3D information of these compounds and could provide a detailed molecular fragment contribution to the inhibitory activity. These models also show clearly how steric, electrostatic, hydrophobicity, and individual fragments affect the potency of NA inhibitors. In addition, CoMFA and CoMSIA field distributions are found to be in well agreement with the structural characteristics of the corresponding binding sites. Therefore, the final 3D-QSAR models and the information of the inhibitor-enzyme interaction should be useful in developing novel potent NA inhibitors.     

Architecture of zero-, one-, two- and three-dimensional structures based on metal ions and pyrazine-2,6-dicarboxylic acid

Six new complexes: [Ln₂(pzda)₃(H₂O)₂] · 2.5H₂O (Ln = Nd, (1); Eu, (2)), [Co(pzda) (bpe)] · 0.125(bpe) · 1.75H₂O (3), [Mn(pzda)(H₂O)_1.5] (4), [Co₂(pzda)₂(bpe)(H₂O)₄] · 0.5(CH₃OH) · H₂O (5) and [Co(pzda)(2,2′-bpy)(H₂O)] · 0.5H₂O (6) (H₂pzda = pyrazine-2,6-dicarboxylic acid, bpe = 1,2-bis(4-pyridyl)ethane, 2,2′-bpy = 2,2′-bipyridine) were obtained from metal salts and H₂pzda under hydro(solvo)thermal conditions. The single crystal X-ray structural analysis reveals that the title complexes have different structures, ranging from zero- to three- dimensions, which are mainly due to the different metal ions, and especially the coordination modes of the pzda ligands. Complexes 1 and 2 have 3D metal-organic frameworks containing a 1D tri-strand array, in which the pzda ligand adopts a pentadentate mode to link lanthanide ions. Complex 3 has a 2D metal-organic framework, in which the pzda ligand acts in a tetradentate mode to connect Co(II) ions into 1D chains, which are further connected by bpe spacers into a 2D framework. While in 4, both of the two carboxylate groups of the pzda ligand adopt μ₂-O bridging modes to link Mn(II) ions into a 1D coordination polymer, which is further assembled into a 2D supramolecular network containing double-stranded hydrogen-bonded helical chains. In both 5 and 6, the pzda ligand binds metal ions as a tridentate ligand (ONO mode) to form zero dimensional structures. Complex 5 is a binuclear molecule, while 6 is a mononuclear complex, which can be attributed to the bridging ligand bpe for 5 and the terminal auxiliary ligand 2,2′-bpy for 6.     

Antiviral potential of natural compounds against influenza virus hemagglutinin

Influenza virus of different subtypes H1N1, H2N2, H3N2 and H5N1 cause many human pandemic deaths and threatening the people worldwide. The Hemagglutinin (HA) protein mediates viral attachment to host receptors act as an attractive target. The sixteen natural compounds have been chosen to target the HA protein. Molecular docking studies have been performed to find binding affinity of the compounds. Out of the sixteen, three compounds CI, CII and CIII found to posses a higher binding affinity. The molecular dynamics (MD) simulation has been performed to study the structural, dynamical properties for the nine different complexes CI, CII, CIII bound with H1, H2, H3 proteins and the results were compared. The molecular mechanics Poission-Boltzmann surface area (MM-PBSA) method is used to compare the binding free energy, its different energy components and per residue binding contribution. The H1 subtype shows higher binding preference for all the curcumin derivatives than H2 and H3. The binding capability of protein subtypes with curcumin derivatives and the binding affinity of curcumin compounds are in the order H1 > H2 > H3 and CI > CII > CIII respectively. The two -O-CH3- groups present in the CI compound help to have strong binding with HA protein than CII and CIII. The van der Waals interaction energy plays a significant role for binding in all the complexes. The hydrogen bonding interactions were monitored throughout the MD simulation. The conserved region (153–155) and the helix region (193–194) of H1, H2, H3 protein subtypes are found to possess higher binding susceptibility for binding of the curcumin derivatives.     

Synthesis of nitrogen bicyclic scaffolds: pyrimido[1,2-a]pyrimidine-2,6-diones

The multi-step synthesis of 1,3,7-trisubstituted pyrimido[1,2-a]pyrimidinediones starting from isothiocyanates is described. These nitrogen bicycles were prepared by an iterative sequence of functionalization/cyclocondensation reactions. [4+2] Cycloaddition reactions took place between diazadienic chains and various acyl chlorides providing sophisticated heterobicycles.     

Synthesis of 2-amino-2,3-dihydrobenzofurans and fully substituted furans from modified Baylis-Hillman adducts

Syntheses of 2-amino-2,3-dihydrobenzofuran derivatives 3a-g and fully substituted furans 5a-f were achieved starting from the Baylis-Hillman adducts. We prepared 2-amino-2,3-dihydrobenzofurans from the Baylis-Hillman adducts of methyl and ethyl acrylates and fully substituted furans from the Baylis-Hillman adducts of alkyl vinyl ketones.