Prisoner's Dilemma on Co-Evolving Networks without Strategy Update

We investigate the game theory in a structured population with the assumption that the evolution of network structure is far faster than that of strategy update. We find that the degree distribution for the finM network consists of two distinct parts： the low degree part which is contributed to by defectors and a broadband in the regime with high degree which is formed by cooperators. The structure of the final network and the final strategy pattern have also been numerically proved to be independent of the game parameters.     

Protein conformational flexibility prediction using machine learning

Using a data set of 16 proteins, a neural network has been trained to predict backbone 15N generalized order parameters from the three-dimensional structures of proteins. The final network parameterization contains six input features. The average prediction accuracy, as measured by the Pearson's correlation coefficient between experimental and predicted values of the square of the generalized order parameter is >0.70. Predicted order parameters for non-terminal amino acid residues depends most strongly on the local packing density and the probability that the residue is located in regular secondary structure.     

Stochastic epidemics and rumours on finite random networks

In this paper, we investigate the stochastic spread of epidemics and rumours on networks. We focus on the general stochastic (SIR) epidemic model and a recently proposed rumour model on networks in Nekovee et al. (2007) [3], and on networks with different random structures, taking into account the structure of the underlying network at the level of the degree–degree correlation function. Using embedded Markov chain techniques and ignoring density correlations between neighbouring nodes, we derive a set of equations for the final size of the epidemic/rumour on a homogeneous network that can be solved numerically, and compare the resulting distribution with the solution of the corresponding mean-field deterministic model. The final size distribution is found to switch from unimodal to bimodal form (indicating the possibility of substantial spread of the epidemic/rumour) at a threshold value that is higher than that for the deterministic model. However, the difference between the two thresholds decreases with the network size, n, following a n^−1/3 behaviour. We then compare results (obtained by Monte Carlo simulation) for the full stochastic model on a homogeneous network, including density correlations at neighbouring nodes, with those for the approximating stochastic model and show that the latter reproduces the exact simulation results with great accuracy. Finally, further Monte Carlo simulations of the full stochastic model are used to explore the effects on the final size distribution of network size and structure (using homogeneous networks, simple random graphs and the Barabasi–Albert scale-free networks).     

基于多路可视图的健康与心梗患者心电图信号复杂网络识别

可视图(visibility graph, VG)算法已被证明是将时间序列转换为复杂网络的简单且高效的方法,其构成的复杂网络在拓扑结构中继承了原始时间序列的动力学特性.目前,单维时间序列的可视图分析已趋于成熟,但应用于复杂系统时,单变量往往无法描述系统的全局特征.本文提出一种新的多元时间序列分析方法,将心梗和健康人的12导联心电图(electrocardiograph, ECG)信号转换为多路可视图,以每个导联为一个节点,两个导联构成可视图的层间互信息为连边权重,将其映射到复杂网络.由于不同人群的全连通网络表现为完全相同的拓扑结构,无法唯一表征不同个体的动力学特征,根据层间互信息大小重构网络,提取权重度和加权聚类系数,实现对不同人群12导联ECG信号的识别.为判断序列长度对识别效果的影响,引入多尺度权重度分布熵.由于健康受试者拥有更高的平均权重度和平均加权聚类系数,其映射网络表现为更加规则的结构、更高的复杂性和连接性,可以与心梗患者进行区分,两个参数的识别准确率均达到93.3%.     

Effects of average degree on cooperation in networked evolutionary game

We study effects of average degree on cooperation in the networked prisoner's dilemma game. Typical structures are considered, including random networks, small-world networks and scale-free networks. Simulation results show that the average degree plays a universal role in cooperation occurring on all these networks, that is the density of cooperators peaks at some specific values of the average degree. Moreover, we investigated the average payoff of players through numerical simulations together with theoretical predictions and found that simulation results agree with the predictions. Our work may be helpful in understanding network effects on the evolutionary games.     

无标度立体Koch网络的建立及其结构性质研究

根据经典Koch曲线的构造,利用四面体作为迭代基元构造了一种立体Koch网络并对其结构性质做了研究,给出了该网络的度分布函数,计算了该网络的团簇系数、平均最短路径长度以及度关联函数.结果表明,所构建的网络是无标度网络,度分布临界指数γ≈3.32;其团簇系数趋向于常数值0.870435;平均路径长度与网络尺寸的对数呈正比关系,说明该网络具有小世界网络特性.另外,计算结果表明knn(k)随k的变化而变化,说明该Koch网络具有一定的度关联性.     

基于复杂网络的电网结构健壮性及Braess悖论现象研究

应用复杂网络理论,建立电力系统的改进导纳模型,结合电网拓扑特性和电气特性对电网的级联故障进行研究.通过随机移除传输线引发电网级联故障,研究网络的节点数、平均度、发电站数量以及发电站的分布状况对系统健壮性的影响,并对小世界电网级联故障过程中的布雷斯(Braess)悖论现象进行分析.研究表明:网络的健壮性与其拓扑结构密切相...     

A modal perspective of lung response

The qualitative modal structure of lung response is investigated. Asymmetry of the branching airway network of the lung leads to clumping of system eigenvalues into distinct and well-separated clusters at low frequency. The breadth of the eigenvalue clusters increases with the degree of asymmetry and frequency. At high frequency the breadth of the clusters exceeds the cluster spacing so that distinct eigenvalue clusters are no longer observed. Symmetric airway networks lead to degenerate mode clusters with large eigenvalue redundancy. The average density of eigenvalues of the undamped system is estimated to be higher than 0.5 per Hz. All modes appear to be in modal overlap.     

Influence of network structure on rumor propagation

Rumor propagation in complex networks is studied analytically and numerically by using the SIR model. Analytically, a mean-field theory is worked out by considering the influence of network topological structure and the unequal footings of neighbors of an infected node in propagating the rumor. It is found that the final infected density of population with degree k   is ρ(k)=1−exp(−αk)$\rho (k)=1-\exp (-\alpha k)$, where α is a parameter related to network structure. The number of the total final infected nodes depends on the network topological structure and will decrease when the structure changes from random to scale-free network. Numerical simulations confirm the theoretical predictions.     

Empirical analysis of the worldwide maritime transportation network

In this paper we present an empirical study of the worldwide maritime transportation network (WMN) in which the nodes are ports and links are container liners connecting the ports. Using the different representations of network topology — the spaces L and P, we study the statistical properties of WMN including degree distribution, degree correlations, weight distribution, strength distribution, average shortest path length, line length distribution and centrality measures. We find that WMN is a small-world network with power law behavior. Important nodes are identified based on different centrality measures. Through analyzing weighted clustering coefficient and weighted average nearest neighbors degree, we reveal the hierarchy structure and rich-club phenomenon in the network.     

有倾向性重连产生的反匹配网络

在具有网络结构的系统中度关联属性对于动力学行为具有重要的影响, 所以产生适当度关联网络的方法对于大量网络系统的研究具有重要的作用. 尽管产生正匹配网络的方法已经得到很好的验证, 但是产生反匹配网络的方法还没有被系统的讨论过. 重新连接网络中的边是产生度关联网络的一个常用方法. 这里我们研究使用重连方法产生反匹配无标度网络的有效性. 我们的研究表明, 有倾向的重连可以增强网络的反匹配属性. 但是有倾向重连不能使皮尔森度相关系数下降到-1, 而是存在一个依赖于网络参数的最小值. 我们研究了网络的主要参数对于网络度相关系数的影响, 包括网络尺寸, 网络的连接密度和网络节点的度差异程度. 研究表明在网络尺寸大的情况下和节点度差异性强的情况下, 重连的效果较差. 我们研究了真实Internet网络, 发现模型产生的网络经过重连不能达到真实网络的度关联系数.     

异质自适应网络中的核心-边缘结构及其对疾病传播的抑制作用

节点属性异质自适应网络中疾病传播的研究表明节点属性异质性可以很大程度上增大传播阈值, 并且自组织形成一个更鲁棒的度异质网络结构. 本文从数值模拟方面研究鲁棒的度分布异质结构的自组织形成过程, 分析发现核心-边缘结构的形成才是导致传播阈值增大的根本原因. 鉴于此, 提出一种重连策略, 能够促进核心-边缘结构的形成, 从而达到增大传播阈值的目的. 这不仅有助于深入认识节点属性异质自适应网络中的流行病传播过程, 而且为疾病传播控制策略的提出提供了新思路.     

Dynamics of networking agents competing for high centrality and low degree

We model a system of networking agents that seek to optimize their centrality in the network while keeping their cost, the number of connections they are participating in, low. Unlike other game-theory based models for network evolution, the success of the agents is related only to their position in the network. The agents use strategies based on local information to improve their chance of success. Both the evolution of strategies and network structure are investigated. We find a dramatic time evolution with cascades of strategy change accompanied by a change in network structure. On average the network self-organizes to a state close to the transition between a fragmented state and a state with a giant component. Furthermore, with increasing system size both the average degree and the level of fragmentation decreases.     

中国城市航空网络的实证研究与分析

以城市为节点，城市间直航线路为边，实证地研究了中国城市航空网络的拓扑性质.研究表明，中国城市航空网络是一个小世界网络，具有短的平均路径长度和大的簇系数，且其度分布服从双段幂律分布.它的度度相关性质与世界航空网络和北美航空网络都不相同.当度较小时，世界航空网络和北美航空网络都是正相关的，但中国城市航空网络未表现出度度相关性；而对于度较大的节点，世界航空网络中其邻点平均度几乎是一个常值，但中国城市航空网络却呈现出负相关性.以往的实证研究暗示，节点具有明确几何位置的网络，如计算机互联网、电力网络等，不表现层次性.但是中国城市航空网络展现出明显的层次性，表明地理因素对其结构演化的影响并不强烈.进一步地，以城市间直航计划每周提供的座位数为边权，研究了网络的含权性质，发现该网络节点度权之间是幂律相关的，相关指数为1.37.     

An effective method to improve the robustness of small-world networks under attack

In this study, the robustness of small-world networks to three types of attack is investigated. Global efficiency is introduced as the network coefficient to measure the robustness of a small-world network. The simulation results prove that an increase in rewiring probability or average degree can enhance the robustness of the small-world network under all three types of attack. The effectiveness of simultaneously increasing both rewiring probability and average degree is also studied, and the combined increase is found to significantly improve the robustness of the small-world network.Furthermore, the combined effect of rewiring probability and average degree on network robustness is shown to be several times greater than that of rewiring probability or average degree individually. This means that small-world networks with a relatively high rewiring probability and average degree have advantages both in network communications and in good robustness to attacks. Therefore, simultaneously increasing rewiring probability and average degree is an effective method of constructing realistic networks. Consequently, the proposed method is useful to construct efficient and robust networks in a realistic scenario.     

Synchronizability of network ensembles with prescribed statistical properties

It has been shown that synchronizability of a network is determined by the local structure rather than the global properties. With the same global properties, networks may have very different synchronizability. In this paper, we numerically studied, through the spectral properties, the synchronizability of ensembles of networks with prescribed statistical properties. Given a degree sequence, it is found that the eigenvalues and eigenratios characterizing network synchronizability have well-defined distributions, and statistically, the networks with extremely poor synchronizability are rare. Moreover, we compared the synchronizability of three network ensembles that have the same nodes and average degree. Our work reveals that the synchronizability of a network can be significantly affected by the local pattern of connections, and the homogeneity of degree can greatly enhance network synchronizability for networks of a random nature.     

一类高聚类系数的加权无标度网络及其同步能力分析

针对真实世界中大规模网络都具有明显聚类效应的特点, 提出一类具有高聚类系数的加权无标度网络演化模型, 该模型同时考虑了优先连接、三角结构、随机连接和社团结构等四种演化机制. 在模型演化规则中, 以概率p增加单个节点, 以概率1–p增加一个社团. 与以往研究的不同在于新边的建立, 以概率φ在旧节点之间进行三角连接, 以概率1–φ进行随机连接. 仿真分析表明, 所提出的网络度、强度和权值分布都是服从幂律分布的形式, 且具有高聚类系数的特性, 聚类系数的提高与社团结构和随机连接机制有直接的关系. 最后通过数值仿真分析了网络演化机制对同步动态特性的影响, 数值仿真结果表明, 网络的平均聚类系数越小, 网络的同步能力越强. 关键词： 无标度网络 加权网络 聚类系数 同步能力     

Learning and structure of neuronal networks

We study the effect of learning dynamics on network topology. Firstly, a network of discrete dynamical systems is considered for this purpose and the coupling strengths are made to evolve according to a temporal learning rule that is based on the paradigm of spike-time-dependent plasticity (STDP). This incorporates necessary competition between different edges. The final network we obtain is robust and has a broad degree distribution. Then we study the dynamics of the structure of a formal neural network. For properly chosen input signals, there exists a steady state with a residual network. We compare the motif profile of such a network with that of the real neural network of C. elegans and identify robust qualitative similarities. In particular, our extensive numerical simulations show that this STDP-driven resulting network is robust under variations of model parameters.     

Synchronization of mobile chaotic agents on connected networks

This work studies the synchronization of a number of mobile agents on a substrate network. Each agent carries a chaotic map and randomly walks on a connected network. The collection of agents consists of another time-varying network derived from the substrate network. It is found that the synchronization conditions of this agent network depend on the average degree of the substrate network’s connectivity, the coupling strength between interacting agents, and the agent density in the network. Synchronization of the agent network on scale-free and ER networks is considered here, and it is found that the scale-free topology is more applicable to synchronize mobile chaotic agents. To get analytical insights, the star graph is taken and considered as a substrate network.     

非理想氩等离子体电子密度和平均离化度理论研究

用SHM模型计算了非理想Ar等离子体在温度T为2.0eV、密度ρ为0.01~0.5g•cm-3的电子密度和平均离化度。研究了非理想Ar等离子体电子密度和平均离化度随温度、密度的变化规律,得到了在温度T为2.0eV、密度ρ为0.01~0.5g•cm-3非理想Ar等离子体的平均离化度小于0.5的结果。这表明非理想Ar等离子体的平均离化度非常低,大量的Ar仍然处于非电离状态。计算的结果还显示了平均离化度随等离子体密度ρ增加而减小的特征,并分析了减小的原因。