Conformational control of Pd2L4 assemblies with unsymmetrical ligands

With increasing interest in the potential utility of metallo-supramolecular architectures for applications as diverse as catalysis and drug delivery, the ability to develop more complex assemblies is keenly sought after. Despite this, symmetrical ligands have been utilised almost exclusively to simplify the self-assembly process as without a significant driving foa mixture of isomeric products will be obtained. Although a small number of unsymmetrical ligands have been shown to serendipitously form well-defined metallo-supramolecular assemblies, a more systematic study could provide generally applicable information to assist in the design of lower symmetry architectures. Pd₂L₄ cages are a popular class of metallo-supramolecular assembly; research seeking to introduce added complexity into their structure to further their functionality has resulted in a handful of examples of heteroleptic structures, whilst the use of unsymmetrical ligands remains underexplored. Herein we show that it is possible to design unsymmetrical ligands in which either steric or geometric constraints, or both, can be incorporated into ligand frameworks to ensure exclusive formation of single isomers of three-dimensional Pd₂L₄ metallo-supramolecular assemblies with high fidelity. In this manner it is possible to access Pd₂L₄ cage architectures of reduced symmetry, a concept that could allow for the controlled spatial segregation of different functionalities within these systems. The introduction of steric directing groups was also seen to have a profound effect on the cage structures, suggesting that simple ligand modifications could be used to engineer structural properties.

Steric and geometric constraints were used to design unsymmetrical ditopic ligands that form single Pd₂L₄ cage isomers with high fidelity.     

Maximizing Coordination Capsule–Guest Polar Interactions in Apolar Solvents Reveals Significant Binding

Guest encapsulation underpins the functional properties of self‐assembled capsules yet identifying systems capable of strongly binding small organic molecules in solution remains a challenge. Most coordination capsules rely on the hydrophobic effect to ensure effective solution‐phase association. In contrast, we show that using non‐interacting anions in apolar solvents can maximize favorable interactions between a cationic Pd₂L₄ host and charge‐neutral guests resulting in a dramatic increase in binding strength. With quinone‐type guests, association constants in excess of 10⁸ m ^?1 were observed, comparable to the highest previously recorded constant for a metallosupramolecular capsule. Modulation of optoelectronic properties of the guests was also observed, with encapsulation either changing or switching‐on luminescence not present in the bulk phase.     

Cooperativity of steric bulk and H-bonding in coordination sphere engineering: heteroleptic PdII cages and bowls by design

Recently developed self-assembly strategies allow to rationally reduce the symmetry of metallosupramolecular architectures. In addition, the combination of multiple ligand types without creating compound mixtures has become possible. Among several approaches to realize non-statistical heteroleptic assembly, Coordination Sphere Engineering (CSE) makes use of secondary repulsive or attractive interactions in direct vicinity of the metal nodes. Previously, we used steric congestion to turn dinuclear [Pd₂L₄] cages with fourfold symmetry into [Pd₂L₃X₂] (X = solvent, halide) bowl structures. Here, we introduce a new subtype of this strategy based on balancing hydrogen bonding and repulsive interactions between ligands carrying quinoline (L^Qu) and 1,8-naphthyridine (L^Na) donors to generate trans-[Pd₂L₂] and [Pd₂L₃L′] cages, assisted by templation of encapsulated fullerenes. Combined with steric congestion caused by acridine (L^Ac) donors, we further report the first example of a heteroleptic [Pd₂L₂L′X₂] bowl. Formation, structure and fullerene binding ability of these metallo-supramolecular hosts were studied by NMR, mass spectrometry and single crystal X-ray diffraction.

Coordination Sphere Engineering (CSE) allows non-statistical assembly of heteroleptic supramolecular architectures by fine adjustment of steric and electronic features around square-planar Pd(ii) cations with naphthyridine donors.     

Chiral Self‐Discrimination and Guest Recognition in Helicene‐Based Coordination Cages

Chiral nanosized confinements play a major role for enantioselective recognition and reaction control in biological systems. Supramolecular self‐assembly gives access to artificial mimics with tunable sizes and properties. Herein, a new family of [Pd₂L₄] coordination cages based on a chiral [6]helicene backbone is introduced. A racemic mixture of the bis‐monodentate pyridyl ligand L¹ selectively assembles with Pd^II cations under chiral self‐discrimination to an achiral meso cage, cis‐[Pd₂ L^1P ₂ L^1M ₂]. Enantiopure L¹ forms homochiral cages [Pd₂ L^1P/M ₄]. A longer derivative L² forms chiral cages [Pd₂ L^2P/M ₄] with larger cavities, which bind optical isomers of chiral guests with different affinities. Owing to its distinct chiroptical properties, this cage can distinguish non‐chiral guests of different lengths, as they were found to squeeze or elongate the cavity under modulation of the helical pitch of the helicenes. The CD spectroscopic results were supported by ion mobility mass spectrometry.     

Wide‐Ranging Host Capability of a PdII‐Linked M2L4 Molecular Capsule with an Anthracene Shell

This article reports that an M₂L₄ molecular capsule is capable of encapsulating various neutral molecules in quantitative yields. The capsule was obtained as a single product by mixing a small number of components; two Pd^II ions and four bent bispyridine ligands containing two anthracene panels. Detailed studies of the host capability of the Pd^II‐linked capsule revealed that spherical (e.g., paracyclophane, adamantanes, and fullerene C₆₀), planar (e.g., pyrenes and triphenylene), and bowl‐shaped molecules (e.g., corannulene) were encapsulated in the large spherical cavity, giving rise to 1:1 and 1:2 host–guest complexes, respectively. The volume of the encapsulated guest molecules ranged from 190 to 490 ų. Within the capsule, the planar guests adopt a stacked‐dimer structure and the bowl‐shaped guests formed an unprecedented concave‐to‐concave capsular structure, which are fully shielded by the anthracene shell. Competitive binding experiments of the capsule with a set of the planar guests established a preferential binding series for pyrenes≈phenanthrene>triphenylene. Furthermore, the capsule showed the selective formation of an unusual ternary complex in the case of triphenylene and corannulene.     

Controlled Construction of Heteroleptic [Pd2(LA)2(LB)(LC)]4+ Cages: A Facile Approach for Site-Selective endo-Functionalization of Supramolecular Cavities

Construction of supramolecular structures with internal functionalities is a promising approach to build enzyme-like cavities. The endo-functionalized [Pd₁₂L₂₄] and [Pd₂L₄] coordination cages represent the most successful systems in this regard. However, these systems mainly contain one type of endo-moiety. We herein provide a solution for the controlled endo-functionalization of [Pd₂L₄] cages. Site-selective introduction of the endo-functional group was achieved through the formation of heteroleptic [Pd₂( L^A )₂( L^B )( L^C )] cages. Using two orthogonal steric control elements is the key for the selective formation of the hetero-assemblies. We demonstrated the construction of two hetero-cages with a single internal functional group as well as a hetero-cage with two distinct endohedral functionalities. The endo-functionalized hetero-cages bound sulfonate guests with fast-exchange dynamics. This strategy provides a new solution for the controlled endo-functionalization of supramolecular cavities.     

Orientational self-sorting in cuboctahedral Pd cages

Cuboctahedral coordination cages of the general formula [Pd₁₂L₂₄]²⁴⁺ (L = low-symmetry ligand) were analyzed theoretically and experimentally. With 350 696 potential isomers, the structural space of these assemblies is vast. Orientational self-sorting refers to the preferential formation of particular isomers within the pool of potential structures. Geometric and computational analyses predict the preferred formation of cages with a cis arrangement at the metal centers. This prediction was corroborated experimentally by synthesizing a [Pd₁₂L₂₄]²⁴⁺ cage with a bridging 3-(4-(pyridin-4-yl)phenyl)pyridine ligand. A crystallographic analysis of this assembly showed exclusive cis coordination of the 3- and the 4-pyridyl donor groups at the Pd²⁺ ions.

Cuboctahedral [Pd₁₂L₂₄]²⁴⁺ cages based on low-symmetry ligands can potentially form a vast number of isomers, but the self-assembly process was found to be highly selective.     

Self‐assembly and Cycling of a Three‐state PdxLy Metallosupramolecular System

The use of stimuli to induce reversible structural transformations in metallosupramolecular systems is of keen interest to chemists seeking to mimic the way that Nature effects conformational changes in biological machinery. While a wide array of stimuli have been deployed towards this end, stoichiometric changes have only been explored in a handful of examples. Furthermore, switching has generally been between only two distinct states. Here we use a simple 2‐(1‐(pyridine‐4‐methyl)‐1H‐1,2,3‐triazol‐4‐yl)pyridine “click” ligand in combination with Pd^II in various stoichiometries and concentrations to quantitatively access and cycle between three distinct species: a [PdL₂]²⁺ monomer, a [Pd₂L₂]⁴⁺ dimer, and a [Pd₉L₁₂]¹⁸⁺ cage.     

Dynamic Open Coordination Cage from Nonsymmetrical Imidazole–Pyridine Ditopic Ligands for Turn‐On/Off Anion Binding

This work demonstrates a new nonconventional ligand design, imidazole/pyridine‐based nonsymmetrical ditopic ligands ( 1 and 1 ^S ), to construct a dynamic open coordination cage from nonsymmetrical building blocks. Upon complex formation with Pd²⁺ at a 1:4 molar ratio, 1 and 1 ^S initially form mononuclear PdL₄ complexes (Pd²⁺( 1 )₄ and Pd²⁺( 1 ^S )₄) without formation of a cage. The PdL₄ complexes undergo a stoichiometrically controlled structural transition to Pd₂L₄ open cages ((Pd²⁺)₂( 1 )₄ and (Pd²⁺)₂( 1 ^S )₄) capable of anion binding, leading to turn‐on anion binding. The structural transitions between the Pd₂L₄ open cage and the PdL₄ complex are reversible. Thus, stoichiometric addition (2 equiv) of free 1 ^S to the (Pd²⁺)₂( 1 ^S )₄ open cage holding a guest anion ((Pd²⁺)₂( 1 ^S )₄?G^?) enables the structural transition to the Pd²⁺( 1 ^S )₄ complex, which does not have a cage and thus causes the release of the guest anion (Pd²⁺( 1 ^S )₄+G^?).     

Capsule–Capsule Conversion by Guest Encapsulation

Guest‐induced M₁₈L₆–M₂₄L₈ capsule–capsule conversion is reported. Both capsules are composed of Pd^II ethylenediamine units (M) and 1,3,5‐tris(3,5‐pyrimidyl)pyrimidine (L), and form trigonal bipyramidal (M₁₈L₆) and octahedral (M₂₄L₈) closed‐shell structures with huge hydrophobic inner spaces. The M₁₈L₆ trigonal bipyramid is converted to the M₂₄L₈ octahedron through encapsulation of large aromatic guests, with the latter capsule possessing a cavity volume three times larger than the former. Despite the dynamic properties of the capsule host, the encapsulated guests are difficult to extract and are thus isolated from the external environment.     

A Water Soluble Pd2L4 Cage for Selective Binding of Neu5Ac

The sialic acid N-acetylneuraminic acid (Neu5Ac) and its derivatives are involved in many biological processes including cell-cell recognition and infection by influenza. Molecules that can recognize Neu5Ac might thus be exploited to intervene in or monitor such events. A key obstacle in this development is the sparse availability of easily prepared molecules that bind to this carbohydrate in its natural solvent; water. Here, we report that the carbohydrate binding pocket of an organic soluble [Pd₂L₄]⁴⁺ cage could be equipped with guanidinium-terminating dendrons to give the water soluble [Pd₂L₄][NO₃]₁₆ cage 7 . It was shown by means of NMR spectroscopy that 7 binds selectively to anionic monosaccharides and strongest to Neu5Ac with K_a=24 M⁻¹. The cage had low to no affinity for the thirteen neutral saccharides studied. Aided by molecular modeling, the selectivity for anionic carbohydrates such as Neu5Ac could be rationalized by the presence of charge assisted hydrogen bonds and/or the presence of a salt bridge with a guanidinium solubilizing arm of 7 . Establishing that a simple coordination cage such as 7 can already selectively bind to Neu5Ac in water paves the way to improve the stability, affinity and/or selectivity properties of M₂L₄ cages for carbohydrates and other small molecules.     

Reversible Transformation between a [PdL2]2+ “Figure-of-Eight” Complex and a [Pd2L2]4+ Dimer: Switching On and Off Self-Recognition

Structural changes to metallosupramolecular assemblies resulting in the release or uptake of guests are currently well established, whereas transformations turning on and off specific self-recognition are far less developed. We report a novel ligand (2,6-bis(1-(3-pyridin-4-yl)phenyl-1H-1,2,3-triazol-4-yl)pyridine) possessing a tridentate central metal-binding site flanked by two pendant pyridyl arms. In a 2:1 ratio with Pd^II metal ions, a spiro-type [PdL₂]²⁺ “Figure-of-eight” complex forms with the central tridentate binding pocket unoccupied. The introduction of an additional one equivalent of Pd^II metal ion results in the conversion to a dimeric [Pd₂L₂]⁴⁺ molecule with the tridentate pocket occupied. There is site-specific self-recognition between dimers in solution with strong NOE peaks between adjacent molecules. The self-recognition between dimers can be turned off in two ways: firstly, adding another equivalent of Pd^II metal ion brings about binding to the previously uncoordinated pyridyl arms that are key to the self-recognition event, and; secondly, addition of sufficient ligand to return the stoichiometry to 2:1 regenerates the [PdL₂]²⁺ complex. Hence, the self-recognition event can be turned on or off through simple variation of L:Pd^II stoichiometry.     

Topological prediction of palladium coordination cages

The preparation of functionalized, heteroleptic Pd_xL_2x coordination cages is desirable for catalytic and optoelectronic applications. Current rational design of these cages uses the angle between metal-binding (∠B) sites of the di(pyridyl)arene linker to predict the topology of homoleptic cages obtained via non-covalent chemistry. However, this model neglects the contributions of steric bulk between the pyridyl residues—a prerequisite for endohedrally functionalized cages, and fails to rationalize heteroleptic cages. We describe a classical mechanics (CM) approach to predict the topological outcomes of Pd_xL_2x coordination cage formation with arbitrary linker combinations, accounting for the electronic effects of coordination and steric effects of linker structure. Initial validation of our CM method with reported homoleptic Pd₁₂LFu₂₄ (LFu = 2,5-bis(pyridyl)furan) assembly suggested the formation of a minor topology Pd₁₅LFu₃₀, identified experimentally by mass spectrometry. Application to heteroleptic cage systems employing mixtures of LFu (∠B = 127°) and its thiophene congener LTh (∠B = 149° ∠B_exp = 152.4°) enabled prediction of Pd₁₂L₂₄ and Pd₂₄L₄₈ coordination cages formation, reliably emulating experimental data. Finally, the topological outcome for exohedrally (LEx) and endohedrally (LEn) functionalized heteroleptic Pd_xL_2x coordination cages were predicted to assess the effect of steric bulk on both topological outcomes and coordination cage yields, with comparisons drawn to experimental data.

A molecular mechanics approach enables the accurate prediction of polyhedral topology for homoleptic and heteroleptic palladium M_xL_2x coordination cages, allowing for new insight and design when considering endo- and exo-hedral functionalization.     

Synthesis of binuclear complexes of PdCl2 with chiral α,α′-diamino-meta-xylene dioximes H2L1, H2L2, and H2L3, the derivatives of the terpenes (+)-3-carene, (R)-(+)-limonene, and (S)-(−)-α-pinene. Crystal structure of [Pd2(H2L1)Cl4]

Chiral α,α′-diamino-meta-xylene dioximes H₂L¹, H₂L², and H₂L³ were obtained from the naturally occurring terpenoids (+)-3-carene, (R)-(+)-limonene, and (S)-(?)-α-pinene, respectively. Reactions of these ligands with PdCl₂ gave the diamagnetic complexes Pd₂(H₂L¹)Cl₄ (I), Pd₂(H₂L²)Cl₄ (II), and Pd₂(H₂L³)Cl₄ (III). According to X-ray diffraction data, the crystal structure of complex I consists of acentric binuclear molecules [Pd₂(H₂L¹)Cl₄]. The coordination polyhedron PdN₂Cl₂ is a square distorted in a tetrahedral manner (trapezium) made up of two N atoms of the tetradentate bridging cyclic ligand H₂L¹ and two Cl atoms. The fragments PdCl₂ in the complex are cis to each other. According to the ¹H NMR spectra of complexes I–III in CDCl₃, the organic ligands are coordinated through the N atoms; in solution, the complexes exist in several forms.     

Stoichiometrically Controlled Revocable Self‐Assembled “Spiro” versus Quadruple‐Stranded “Double‐Decker” Type Coordination Cages

The simple combination of Pd^II with the tris‐monodentate ligand bis(pyridin‐3‐ylmethyl) pyridine‐3,5‐dicarboxylate, L , at ratios of 1:2 and 3:4 demonstrated the stoichiometrically controlled exclusive formation of the “spiro‐type” Pd₁L₂ macrocycle, 1 , and the quadruple‐stranded Pd₃L₄ cage, 2 , respectively. The architecture of 2 is elaborated with two compartments that can accommodate two units of fluoride, chloride, or bromide ions, one in each of the enclosures. However, the entry of iodide is altogether restricted. Complexes 1 and 2 are interconvertible under suitable conditions.     

Allosterically Regulated Guest Binding Determines Framework Symmetry for an FeII4L4 Cage

Self-assembly of a flexible tritopic aniline and 3-substituted 2-formylpyridine subcomponents around iron(II) templates gave rise to a low-spin Fe^II₄L₄ capsule, whereas a high-spin Fe^II₃L₂ sandwich species formed when a sterically hindered 6-methyl-2-formylpyridine was used. The Fe^II₄L₄ cage adopted a new structure type with S₄ symmetry, having two mer-Δ and two mer-Ʌ metal vertices, as confirmed by NMR and X-ray crystallographic analysis. The flexibility of the face-capping ligand endows the resulting Fe^II₄L₄ framework with conformational plasticity, enabling it to adapt structurally from S₄ to T or C₃ symmetry upon guest binding. The cage also displayed negative allosteric cooperativity in simultaneously binding different guests within its cavity and at the apertures between its faces.     

Synthesis of binuclear complexes of PdCl2 with chiral ethylenediamine dioxime (H2L1), piperazine dioxime (H2L2), and propylenediamine dioxime (H2L3), the derivatives of the natural monoterpenoid (R)-(+)-limonene. The crystal structures of [Pd2(H2L1)Cl4] and [Pd2(H2L2)Cl4]

The diamagnetic complexes [Pd₂(H₂L¹)Cl₄] (I), [Pd₂(H₂L²)Cl₄] (II), and Pd₂(H₂L³)Cl₄(III) with chiral ligands derived from the natural monoterpenoid (R)-(+)-limonene are obtained (H₂ L¹ is ethylenediamine dioxime, H₂L² is piperazine dioxime, and H₂L³ is propylenediamine dioxime). According to X-ray diffraction data, the crystal structures of complexes I and II are composed of binuclear acentric molecules. The coordination polyhedra PdN₂Cl₂ are trapeziums (squares distorted in a tetrahedral manner) made up of two N atoms of the tetradentate bridging cyclic ligands H₂L¹ and H₂L² and two Cl atoms. The fragments PdCl₂ are trans in the complexes. The ¹³C and ¹H NMR spectra of complexes I and II in CDCl₃ also suggest their binuclear structures.     

Tunable Fullerene Affinity of Cages,Bowls and Rings Assembled by PdII Coordination Sphere Engineering

For metal-mediated host compounds, the development of strategies to reduce symmetry and introduce multiple functionalities in a non-statistical way is a challenging task. We show that the introduction of steric stress around the coordination environment of square-planar Pd^II cations and bis-monodentate nitrogen donor ligands allows to control the size and shape of the assembled product, from [Pd₂L₄] cages over [Pd₂L₃] bowl-shaped structures to [Pd₂L₂] rings. Therefore, banana-shaped ligand backbones were equipped with pyridines, two different quinoline isomers and acridine, the latter three introducing steric congestion through hydrogen substituents on annelated benzene rings. Differing behavior of the four resulting hosts towards the binding of C₆₀ and C₇₀ fullerenes was studied and related to structural differences by NMR spectroscopy, mass spectrometry and single crystal X-ray diffraction. The three cages based on pyridine, 6-quinoline or 3-quinoline donors were found to either bind C₆₀, C₇₀ or no fullerene at all.     

Hypoxanthine,xanthine and theobromine complexes with palladium(II) and platinum(IV) chlorides

Summary Complexes of the general types Pd(L)(LH)Cl (LH=hxH, xnH, or tbH) and Pt(L)(LH)Cl₃ (LH=hxH, or xnH) are formed by boiling under reflux 21 molar mixtures of hypoxanthine (hxH), xanthine (xnH) or theobromine (tbH) and PdCl₂ or PtCl₄ in ethanol-triethyl orthoformate. These complexes appear to be linear chain polymeric species, characterized by single monoanionic L^– ligands bridging between adjacent Pd²⁺ or Pt⁴⁺ ions. Inclusion of one terminal neutral LH and one terminal chloro-ligand completes the coordination sphere in the square-planar Pd²⁺ complexes, while the Pt⁴⁺ complexes aretrans-octahedral, involving three terminal chloro and one terminal LH ligand per platinum. The possible binding sites of the bidentate bridging L^– and the unidentate terminal LH are discussed.     

Synthesis and structure of palladium(II) and copper(II) complexes with chiral bis-α-aminooximes containing (+)-3-carene or (+)-limonene fragments and 4,4′-methylenedianiline linker. Crystal structure of the complex [Cu(i-PrOH)Cl2(μ-H2L3)CuCl2·H2O]

Coordination compounds Pd₂(H₂L²)Cl⁴ (I), Cu₂(H₂L²)Cl₄ (II), Pd₂(H₂L³)Cl₄ (III), and Cu₂(H₂L³)Cl₄ (IV), where H₂L² and H₂L³ are chiral bis-α-aminooxime ligands consisting of (+)-3-carene or (+)-limonene fragments and 4,4′-methylenedianiline linker, were synthesized and examined by NMR, ESR, and IR spectroscopy. The structure of [Cu(i-PrOH)CL₂(μ-H₂L³)CuCL₂·H₂O] (V) was determined by X-ray analysis.