Spectroscopic evidence for the formation of helical structures in gas-phase short peptide chains

Aminoisobutyric acid (Aib) is a synthetic amino acid known to favor the formation of 3(10) helical structures in condensed phases, namely, crystals. The intrinsic character of these helicogenic properties has been investigated on the Ac-Aib-Phe-Aib-NH2 molecule under isolated conditions, namely, in the gas phase, both experimentally by double-resonance IR/UV spectroscopy and theoretically by quantum chemistry. A convergent set of evidence, based on energetic, IR, and UV spectroscopic data as well as on analogies with the similar peptide Ac-Ala-Phe-Ala-NH2 previously studied, enables us to conclude the formation of an incipient 310 helix in these isolated systems.     

Spectroscopic evidence for gas-phase formation of successive beta-turns in a three-residue peptide chain

We report the first gas-phase spectroscopic study of a three-residue model of a peptide chain, Ac-Phe-Gly-Gly-NH2 (Ac = acetyl), using the IR/UV double resonance technique. The existence of at least five different conformers under supersonic expansion conditions is established, most of them exhibiting rather strong intramolecular H-bonds. One of the most populated conformers, however, exhibits a different H-bonding network characterized by two weak H-bonds. Comparison of the amide A and I/II experimental data with density functional theory calculations carried out on a series of selected conformations enables us to assign this conformer to two successive beta-turns along the peptide chain, the two H-bonds being of C10 type, i.e., each of them closing a 10-atom ring in the molecule. The corresponding form is found to be more stable than the 310 helix secondary structure (not observed), presumably because of specific effects due to the glycine residues.     

Spectroscopic and theoretical evidence for oxazolone ring formation in collision-induced dissociation of peptides

Infrared spectroscopy of the b4+ fragment of Leu-enkephalin demonstrates that the oxazolone ring is formed during collision-induced dissociation of protonated peptides, whereas the linear acylium structure is not observed. Three distinct oxazolone structures are identified, based on the highly conformer-diagnostic C=O stretching mode of the oxazolone ring, clearly showing that proton transfer from the oxazolone ring to the N-terminus takes place. Note that the presence of a cyclic peptide b4+ isomer cannot be excluded.     

Spectroscopic evidence for the unusual stereochemical configuration of an endosome-specific lipid

At a glance: The stereochemical configuration of the diglycerophosphate backbone of the endosome-specific lipid bis(monoacylglycero)phosphate (BMP, see picture) was determined by (1)H?NMR spectroscopy. Enantiomeric discrimination was facilitated by introduction of D-camphor ketals as chiral shift reagents, and enantiopure synthetic BMP analogues were prepared as reference materials. Natural BMP exhibited the unusual sn-1,1' diglycerophosphate backbone.     

Spectroscopic evidence for the existence of the CF3OSO3 radical

The first spectroscopic evidence for the existence of the CF(3)OSO(3) radical has been obtained from matrix isolation and FT-IR and UV spectroscopic studies. The vibrational frequencies measured are in reasonable agreement with predictions from density functional calculations. Upon visible and UV photolysis of the CF(3)OSO(3) radical, SO(3) is produced and provides experimental support for a new light-driven route for the oxidation of SO(2) to SO(3) assisted by CF(3)O radicals.     

Spectroscopic evidence for the formation of a four-coordinate Co2+ cobalamin species upon binding to the human ATP:cobalamin adenosyltransferase

The human adenosyltransferase hATR converts exogenous cobalamin into coenzyme B12 by transferring the adenosyl group from cosubstrate ATP to a transiently formed Co1+cobalamin (Co1+Cbl) species. A particularly puzzling aspect of hATR function is that the midpoint potential for Co2+Cbl --> Co1+Cbl reduction is below that of readily available biological reductants. Our magnetic circular dichroism and electron paramagnetic resonance spectroscopic studies reported here reveal that, in the absence of ATP, the interaction between Co2+Cbl and hATR promotes partial conversion of the cofactor to its "base-off" form in which a water molecule occupies the lower axial position. This interaction becomes much stronger in the presence of ATP, leading to the formation of an unprecedented Co2+Cbl species with spectroscopic signatures consistent with an essentially four-coordinate, square-planar Co2+ center. This unusual Co2+Cbl coordination is expected to raise the Co2+/1+ reduction potential well into the physiological range.     

Spectroscopic evidence for a delocalized excited state in the magnus salts

The polarized single-crystal spectra of the Magnus salts [Pt(NH₃)₄][PtCl₄], [Pd(NH₃)₄] [PtCl₄], [Pt(NH₃)₄] [PdCl₄], and [Pd(NH₃)₄][PdCl₄] have been obtained in the quartz ultraviolet and visible regions. These results provide strong evidence for a delocalized excited state being associated with the intense ultraviolet transition found in the spectra of the Magnus salts. One thus has available an important new criterion for the evaluation of the theoretical treatments of these systems.     

Spectroscopic investigations of metalloporphyrin-oligopeptide systems: evidence for peptide aggregation

Anionic pentapeptides consisting of a string of four glutamic acid residues terminated by either tyrosine (Glu4Tyr) or tryptophan (Glu4Trp) were synthesized, and their aggregation properties in buffered (pH = 7.0) aqueous solutions were investigated using two different approaches. In the first approach, the effects of the concentration of peptide used as its own probe (intrinsic probe) on its fluorescence emission, circular dichroism, surface tension, and solution pH yielded similar critical peptide concentrations of around 175 microM. This particular concentration was taken as evidence for peptide aggregation. In the second approach, peptide aggregation was investigated using cationic metalloporphyrins, tetrakis(N-methyl-4-pyridyl)porphyrin (Pd(II)TMPyP(4+) and Zn(II)TMPyP(4+)), as extrinsic probes. The effect of peptide concentration on porphyrin ground-state absorption confirmed peptide aggregation, but at a lower critical peptide concentration near 125 microM. This difference was attributed to the possible distortion introduced by the association of one (or more) large metalloporphyrin molecule with the peptide aggregates. Evidence for peptide aggregation was also demonstrated from the effect of peptide concentration on Pd(II)TMPyP(4+) triplet-state decay. The fast component (k(f), associated with electron transfer from the target Tyr and Trp residues to the porphyrin triplet state) was found to be independent of peptide concentration, implying no noticeable effect of peptide aggregation on the electron-transfer event. This was attributed to the fact that species formed by excitation of porphyrin associated with ion-pair complexes or bound to peptide aggregates and the diffusion together of the separate T(1) and peptide entities in the bulk phase are kinetically similar. On the other hand, the slower component (k(s)) of the decay, which is associated with the diffuse formation of an encounter complex between the free peptide and T(1) porphyrin (bulk phase), was peptide-dependent and displayed a critical peptide concentration near 125 microM, above which it became practically independent of peptide concentration. This invariance of k(s) was taken as an indication that the free peptide concentration in the bulk phase remains constant above 125 microM, the concentration at which peptide molecules prefer to associate as aggregates.     

Spectroscopic evidence for radiation-induced crosslinking of poly(tetrafluoroethylene)

Direct spectroscopic evidence for radiation-induced crosslinking of poly(tetrafluoroethylene) (PTFE) is presented for all x-ray and electron dose levels above which it is possible to distinguish between deliberately introduced radiation damage and the x-ray damage inherent in obtaining an x-ray photoelectron spectrum (XPS). The C (1s) spectrum obtained after irradiation with 2 keV electrons for all doses greater than 1 μA-min/cm² consists of a four-peak spectrum identical to that previously obtained for plasma-polymerized tetrafluoroethylene and assigned to carbon atoms with variable numbers of bound F atoms (CF₃, CF₂, CF₁, and CF₀). X-ray irradiated PTFE can be fitted with the same four-peak spectrum. At or below an electron dose level of 1 μA-min/cm², the radiation damage is comparable to that produced by the x-ray dose necessary to obtain an XPS spectrum. The CF₁ and CF₀ components increase with increasing electron dose, and at high electron doses dominate the spectrum. With increasing dose the CF₃ component approaches a constant value while both the CF₂ component and the total F : C ratio decreases. These four components are those expected to result from radiation-induced crosslinking reactions of the polymer and are consistent with previous suggestions that crosslinking is the basis of radiation patterned adhesion to PTFE. © 1993 John Wiley & Sons, Inc.     

Spectroscopic study of the formation and structure of polyselenacyclobutane

Selenacyclobutane (trimethylene selenide) readily undergoes photochemical reaction to give polymeric products. Also, the material polymerizes rapidly when the polycrystalline solid film liquifies on a salt substrate in vacuum. Upon polymerization of the sample, infrared and Raman spectra exhibit profound changes which definitely establish ring cleavage. The Raman spectra of the polymer reveal strong C–Se stretching peaks but little or no scattering in the region of Se–Se stretching, strongly suggesting that the polymerization process proceeds in a regular head-to-tail fashion. An EPR study of the monomer exposed to ultraviolet radiation at ?180°C supports this fact, since the resulting spectrum is indicative of an intermediate radical species, (CH₂CH₂-CH₂Se)_n., where n is sufficiently large that the terminal electrons do not interact. No triplet spectra were observed. Molecular oxygen apparently plays an important role in the polymerization kinetics, since it is found that degassed samples of the substance, in contrast to those which have not been degassed, polymerize rapidly even under room illumination. Freezing-point depression measurements fix a lower limit to the average molecular weight of the polymer at 2700 (n = 23 monomer units).     

Spectroscopic evidence for a persistent benzenium cation in zeolite H-beta

Experimental evidence of protonation of an aromatic ring by a zeolite is hereby presented for the first time. The changes in vibrational properties and electronic transitions of the highest polymethylbenzene homologue, that is, hexamethylbenzene, were investigated after introducing the compound directly into a H-beta zeolite. Protonation of the aromatic ring, and thus the loss of symmetry, activated a vibrational ring mode at 1600 cm(-)(1). Furthermore, an electronic transition around 26 000 cm(-)(1), which was totally absent for the neutral species, was an obvious consequence of protonation. A parallel study of hexamethylbenzene adsorbed on a beta zeolite virtually free from protons did not show those distinctive spectral features. On the basis of the gas-phase proton affinity of hexamethylbenzene, a complete proton transfer from the zeolite framework to the molecule is, according to conventional considerations, not expected. The hexamethylbenzenium ion is stable in the zeolite cavities at least up to 200 degrees C. The remarkable persistence of this carbenium ion may be attributed to spatial constraints imposed by the tight fit of the cation inside the zeolite channels. Hexamethylbenzene is a relevant reaction intermediate in the methanol-to-hydrocarbons reaction and also plays a central role as a coke precursor in zeolite-catalyzed reactions that involve polymethylbenzenes.     

Spectroscopic monitoring for the formation of mesoporous MCM-41 materials upon microwave irradiation

The mesoporous MCM-41 materials were prepared in very short crystallization time (∼40 min) upon microwave irradiation in comparison with conventional hydrothermal heating method. With both microwave irradiation and hydrothermal heating, the MCM-41 formation via supramolecular templating method has been monitored by fluorescence and electron spin resonance (ESR) spectroscopy. Pyrene as a fluorescence probe and 4-(N,N-dimethyl-N-hexadecyl)ammonium-2,2,6,6-tetramethyl piperidinyloxy iodide (CAT16) as a spin probe were respectively dissolved into the micelle solutions to form the MCM-41 precursor gels. These probes allow the monitoring of the supramolecular interaction between the anionic silicate species and the cationic surfactant molecules during the MCM-41 formation. Analyses of fluorescence and ESR spectra indicate that the fast increase of hydrophobicity and microviscosity at the solubilzation sites of the probes results from the accelerated condensation of silicates onto the micelle surface upon microwave irradiation. The fluorescence change from the silicate L-center in the MCM-41 precursor gel also probes the fast silicate condensation upon microwave irradiation. It seems that the fast formation of MCM-41 upon microwave irradiation is ascribed to the microwave-susceptible head groups of surfactant molecules in addition to fast dissolution of the precursor gel.     

Spectroscopic evidence for the partial dissociation of H2O on ZnO(1010)

The interaction of water with the non-polar ZnO(1010) surface has been studied by high resolution electron energy loss spectroscopy (HREELS) and thermal desorption spectroscopy (TDS). Adsorption of water at room temperature leads to the partial dissociation of water molecules giving rise to a well defined (2x1) superstructure. This observation was confirmed by the HREELS data which show the water-induced O-H stretching modes at 396 and 460 meV (3193 and 3709 cm-1) as well as the peak at 456 meV (3677 cm-1) arising from the OH species. The large red shift of the loss at 396 meV indicates unusually strong hydrogen bonding interactions of water to both neighbouring adsorbate molecules and the surface O atoms which are responsible for the partial dissociation of water molecules on the perfect ZnO(1010) surface.     

Spectroscopic evidence for an oxazolone structure of the b2 fragment ion from protonated tri-alanine

Infrared multiple photon dissociation (IRMPD) spectroscopy is used to identify the structure of the b ₂⁺ ion generated from protonated tri-alanine by collision induced dissociation (CID). The IRMPD spectrum of b ₂⁺ differs markedly from that of protonated cyclo-alanine-alanine, demonstrating that the product is not a diketopiperazine. Instead, comparison of the IRMPD spectrum of b ₂⁺ to spectra predicted by density functional theory provides compelling evidence for an oxazolone structure protonated at the oxazolone N-atom.     

Spectroscopic evidence for a dinitrogen complex of gallium and estimation of the Ga-N2 bond strength

Matrix-isolation experiments were performed to study the interaction between Ga atoms and N2 by using Raman and UV/Vis spectroscopies for detection and analysis. It was revealed that a weak complex is formed, for which resonance Raman spectra were obtained. Several overtones were sighted, allowing a rough estimate of the Ga-N2 fragmentation energy to be made (approximately 19 kJ mol(-1)). The excitation profile obtained from the spectra at different laser wavelengths agrees with the UV/Vis spectrum and shows that the complex exhibits an electronic transition at around 410 nm. At the Ga atom, this transition can be described as a 2S<--2P or 2D<--2P excitation, which is red-shifted from its position for free Ga atoms (approximately 340 nm and 270 nm for 2S<--2P and 2D<--2P, respectively) as a result of N2 complexation. The effect of complexation involves, therefore, only slight stabilization of the 2P ground state but relatively strong stabilization of the excited (2)S state. Accordingly, for the Ga atom in its excited 2S state, the Ga-N2 bond energy can be estimated to be around 79 kJ mol(-1).     

Spectroscopic and theoretical evidence for the elusive intermediate of the photoinitiated and thermal rearrangements of photochromic spiropyrans

Spectral properties and photochromic behavior of a series of novel 1',3',3'-trimethyl-1,2-tetramethylenespiro[7H-furo(3,2-f)-(2H-1)-benzopyran-7,2'-indolines] 1-4 have been studied. The mechanism of the photoinitiated ring-opening reaction involves the formation of an acoplanar cis-cisoid intermediate, the lifetime of which in the case of 6-(tert-butyl) derivative 4 is long enough to observe its absorption and fluorescence spectra under conditions of continuous irradiation. The occurrence of the intermediate on the reaction paths of the thermal and photochemical ring-opening processes has been also shown by the DFT and CIS calculations. The TD-B3LYP/6-31G//HF/6-31G calculated spectrum of the intermediate well matches that observed experimentally. For spiropyran 3 with a 6-NO(2) group, kinetic and activation parameters of the photoinitiated coloration and dark bleaching reactions have been determined.