Theoretical study of the role of low-barrier hydrogen bonds in enzyme catalysis: a model of proton transfer in serine protease

 A model of low-barrier hydrogen bonds (LBHBs) in enzymes has been studied by ab initio quantum mechanical calculations including the self-consistent reaction field solvent model. The hydrogen-bond strengths and the deprotonation energies for the hydrogen-bonded and non-hydrogen-bonded cis-urocanic acid were calculated at the HF/6-31 + G(d,p) level at various dielectric constants. The same calculations were performed for the α,β-dihydrourocanic acid to model the catalytic dyad of serine protease. The deprotonation energy of N^ɛ2 in α,β-dihydrourocanic acid is increased by formation of LBHBs and depends very much on the dielectric constant. This study suggests that the formation of LBHBs increases the basicity of the dyad, and the polarity change near the reaction center in the active site could help the proton abstraction from Ser 195 and the donation to the leaving group. Both the LBHBs and the environment can play crucial roles in the enzyme catalysis. Received: 8 March 2000 / Accepted: 3 January 2001 / Published online: 3 May 2001     

Lipase Immobilized on the Hydrophobic Polytetrafluoroethene Membrane with Nonwoven Fabric and Its Application in Intensifying Synthesis of Butyl Oleate

The synthesis of butyl oleate was studied in this paper with immobilized lipase. Five types of membrane were used as support to immobilize Rhizopus arrhizus lipase by following a procedure combining filtration and protein cross-linking. Results showed that hydrophobic polytetrafluoroethene membrane with nonwoven fabric (HO-PTFE-NF) was the favorite choice in terms of higher protein loading, activity, and specific activity of immobilized lipase. The factors including solvent polarity, lipase dosage, concentration, and molar ratio of substrate and temperature were found to have significant influence on conversion. Results showed that hexane (logP = 3.53) was a favorable solvent for the biosynthesis of butyl oleate in our studies. The optimal conditions were experimentally determined of 50 U immobilized lipase, molar ratio of oleic acid to butanol of 1.0, substrate concentration of 0.12 mol/L, temperature of 37 °C, and reaction time of 2 h. The conversion was beyond 91% and decreased slightly after 18 cycles. Lipase immobilization can improve the conversion and the repeated use of immobilized lipase relative to free lipase.     

Optimization of Chlorophyllase-catalyzed Hydrolysis of Chlorophyll in Monophasic Organic Solvent Media

The effects of selected reaction parameters, including solvent hydrophobicity, initial water activity, agitation speed, temperature and enzyme concentration, on the biocatalytic efficiency of a chlorophyllase enzymatic extract from Phaeodactylum tricornutum in neat organic solvent media were investigated. The highest chlorophyllase specific activity of 322 nmol hydrolyzed chlorophyll per gram of protein per minute and bioconversion yield of 91% were obtained in the reaction mixture of hexane/2-octanone (98.3:1.7, v/v), at a controlled initial water activity of 0.90. R _O/A value, which is the ratio of the specific activity in the organic solvent to that in the aqueous/miscible organic solvent medium, was 1.5 × 10⁻³. To reduce the substrate diffusional limitations, the appropriate agitation speed and enzyme concentration were determined. The optimum temperature for maximal enzymatic activity and activation energy were 35°C and 105.0 kJ/mol, respectively. Although the catalytic efficiency of chlorphyllase in the neat organic solvent mixture was lower than that in the aqueous medium, its half-life time in the first environment at temperature ranging from 35 to 50°C was increased by 5.0 to 15.0 times.     

Microencapsulated mycelium-bound tannase from Aspergillus niger

Microencapsulated Aspergillus niger with mycelium-bound tannase activity was employed to investigate the esterification of propyl gallate from gallic acid and propanol in organic solvents. The effects of various organic solvents (log P:−1.0 to 6.6) on the enzymatic reactions showed that benzene (log P:2.0) was the suitable solvent, for which the conversion reached 26.8%. The optimum catalyst concentration and water concentration was found at 25 capsules in 10 mL of benzene and 0.04 g of water/capsule. The external mass transfer effect could be eliminated at stirring speeds of 180 rpm or higher. Both substrates 1-propanol and gallic acid had significant inhibition effects on the tannase activity. Maximum molar conversion (36.2%) was achieved with 9.1% (v/v) 1-propanol and 8 mM gallic acid and decreased with increasing amounts of substrates.     

Accelerated sample treatment for screening of banned doping substances by GC–MS: ultrasonication versus microwave energy

A comparison between ultrasonication and microwave irradiation as tools to achieve a rapid sample treatment for the analysis of banned doping substances in human urine by means of gas chromatography–mass spectrometry (GC–MS) was performed. The following variables were studied and optimised: (i) time of treatment, (ii) temperature, (iii) microwave power and (iv) ultrasonic amplitude. The results were evaluated and compared with those achieved by the routine method used in the World Anti-Doping Agency (WADA) accredited Antidoping Laboratory of Rome. Only under the effect of the ultrasonic field was it possible to enhance the enzymatic hydrolysis reaction rate of conjugated compounds. Similar reaction yield to the routine method was achieved after 10 min for most compounds. Under microwave irradiation, denaturation of the enzyme occurs for high microwave power. The use of both ultrasonic or microwave energy to improve the reaction rate of the derivatisation of the target compounds with trimethyliodosilane/methyl-N-trimethylsilyltrifluoroacetamide (TMSI/MSTFA/NH₄I/2-mercaptoethanol) was also evaluated. To test the use of the two systems in the acceleration of the reaction with TMSI, a pool of 55 banned substances and/or their metabolites were used. After 3 min of ultrasonication, 34 of the 55 compounds had recoveries similar to those obtained with the classic procedure that lasts for 30 min (Student’s t test, n = 5), 18 increased to higher silylation yields, and for the compounds 13β,17α-diethyl-3α,17β-dihydroxy-5α-gonane (norboletone metabolite 1), metoprolol and metipranolol the same results were obtained increasing the ultrasonication time to 5 min. Similar results were obtained after 3 min of microwave irradiation at 1,200 W. In this case, 30 of the 55 compounds had recoveries similar to the classic procedure (Student’s t test, n = 5) whilst 18 had higher silylation yields. For the compounds 3α-hydroxy-1α-methyl-5α-androstan-17-one (mesterolone metabolite 1), 17α-ethyl-5β-estrane-3α,17β,21-triol (norethandrolone metabolite 1), epioxandrolone, 4-chloro-6β,17β-dihydroxy-17α-methyl-1,4-androstadien-3-one (chlormetandienone metabolite 1), carphedon, esmolol and bambuterol the same results were obtained after 5 min under microwave irradiation.     

Formulas and numerical table for the radial part of overlap integrals with the same screening parameters of Slater-type orbitals

 The numerical properties of the radial part of overlap integrals with the same screening parameters in the form of polynomials in p = ξR over Slater-type orbitals have been studied and obtained by using three different methods. For that purpose, the characteristics of auxiliary functions were used first, then Fourier transform convolution theorem, and recurrence relations for the basic coefficients of A ^s _{n l λ, n ′ l ′λ} were used. The calculations of the radial part of overlap integrals with the same screening parameters were made in the range 1 ≤ n ≤ 75, 1 ≤ n′ ≤ 75, and 10⁻⁶ ≤ p. Received: 18 January 2001 / Accepted: 5 April 2001 / Published online: 27 June 2001     

Mobile ion transport pathways in (LiBr) x [(Li2O)0.6(P2O5)0.4](1−x) glasses

(LiBr) _x [(Li₂O)_0.6(P₂O₅)_0.4]_{(1 − x)} glasses with 0 ≤ x ≤ 0.2 are prepared by melt quenching. Glass transition temperature (T _g), ionic conductivity (σ), and its activation energy (E _a) are determined experimentally and correlated to molecular dynamics (MD) simulations with an optimized potential, fitted to match bond lengths, coordination numbers, and ionic conductivity. Based on equilibrated MD configurations, ion transport pathways are modelled in detail by the bond valence approach to clarify the influence of the halide dopant concentration on the glass structure and its consequence for Li ion mobility. Results of experimental and computational studies are compared with our previous report on the (LiCl) _x [(Li₂O)_0.6(P₂O₅)_0.4]_{(1 − x)} system. Both T _g and σ values are higher for LiBr-doped glasses than for LiCl-doped glasses, but the effect of halide doping is unusually small.     

Depolymerization of Chitosan with a Crude Cellulase Preparation from <Emphasis Type="Italic">Aspergillus Niger</Emphasis>

A crude cellulase preparation from Aspergillus niger was used to depolymerize chitosan. The depolymerization process was followed by measuring the apparent viscocity and the intrinsic viscosity. The optimum conditions for enzymatic hydrolysis were investigated. On the selected optimum conditions (pH 5.0, temperature 50 °C, and an enzyme to substrate ratio of 1:5), chitosan was hydrolyzed for 1, 4, 8, and 24 h, its viscosity-average molecular weights were 3.49 × 10⁴, 1.18 × 10⁴, 5.83 × 10³, and 1.13 × 10³, respectively. Compared with chitosan having viscosity-average molecular weight of 5.18 × 10⁵ before enzymatic hydrolysis, the crude cellulase preparation had rather apparent effect on depolymerization of chitosan. Through the comparison of different origin of cellulases, the prepared cellulase has good ability of enzymatic hydrolysis. The reproducibility and reversibility for enzymatic hydrolysis was appraised. The data are of value for the production of low-molecular weight chitosans and chitooligomers of medical and biotechnological interest.     

Nitrosation of Phenolic Compounds: Effects of Alkyl Substituents and Solvent

 Nitrosation reactions of phenol, o-cresol, 2,6-dimethylphenol, o-tert-butylphenol, 2-hydroxyacetophenone, and 2-allylphenol in water and water/acetonitrile were studied. Kinetic monitoring of the reactions was accomplished by spectrophotometric analysis of the nitrosated products at 345 nm. The dominant reaction was C-nitrosation via a mechanism consisting of an attack on the nitrosatable substrate by NO⁺/NO₂H₂ ⁺ followed by a slow proton transfer. The values of the rate constants of phenolic C-nitrosation were increased by electron donating substituents, and a good Hammett correlation was observed with ρ = −6.1. The results also revealed the strong effect of pH and the permitivity of the reaction medium on the rate constant, whose maximum values were observed for pH ≈ 3, decreasing strongly for higher pH values. The study in water/acetonitrile with up to 25% acetonitrile showed that it is possible to inhibit the reaction strongly by increasing the percentage of the organic component. The conclusions drawn show that (i) it is possible to predict the rate of nitrosation of phenolics as a function of the meta-substituents on the phenol ring and (ii) the nitrosation of phenolics can be strongly inhibited by increasing the pH of the reaction medium as well as by lowering its dielectric constant.     

Nitrosation of Phenolic Compounds: Effects of Alkyl Substituents and Solvent

Summary.  Nitrosation reactions of phenol, o-cresol, 2,6-dimethylphenol, o-tert-butylphenol, 2-hydroxyacetophenone, and 2-allylphenol in water and water/acetonitrile were studied. Kinetic monitoring of the reactions was accomplished by spectrophotometric analysis of the nitrosated products at 345 nm. The dominant reaction was C-nitrosation via a mechanism consisting of an attack on the nitrosatable substrate by NO⁺/NO₂H₂ ⁺ followed by a slow proton transfer. The values of the rate constants of phenolic C-nitrosation were increased by electron donating substituents, and a good Hammett correlation was observed with ρ = −6.1. The results also revealed the strong effect of pH and the permitivity of the reaction medium on the rate constant, whose maximum values were observed for pH ≈ 3, decreasing strongly for higher pH values. The study in water/acetonitrile with up to 25% acetonitrile showed that it is possible to inhibit the reaction strongly by increasing the percentage of the organic component. The conclusions drawn show that (i) it is possible to predict the rate of nitrosation of phenolics as a function of the meta-substituents on the phenol ring and (ii) the nitrosation of phenolics can be strongly inhibited by increasing the pH of the reaction medium as well as by lowering its dielectric constant. Received July 13, 2001. Accepted (revised) September 18, 2001     

Biomolecular profiling of metastatic prostate cancer cells in bone marrow tissue using FTIR microspectroscopy: a pilot study

Prostate cancer (CaP) cells preferentially metastasise to the bone marrow, a microenvironment that plays a substantial role in the sustenance and progression of the CaP tumour. Here we use a combination of FTIR microspectroscopy and histological stains to increase molecular specificity and probe the biochemistry of metastatic CaP cells in bone marrow tissue derived from a limited source of paraffin-embedded biopsies of different patients. This provides distinction between the following dominant metabolic processes driving the proliferation of the metastatic cells in each of these biopsies: glycerophospholipid synthesis from triacylglyceride, available from surrounding adipocytes, in specimen 1, through significantly high (p ≤ 0.05) carbohydrate (8.23 ± 1.44 cm⁻¹), phosphate (6.13 ± 1.5 cm⁻¹) and lipid hydrocarbon (24.14 ± 5.9 cm⁻¹) signals compared with the organ-confined CaP control (OC CaP), together with vacuolation of cell cytoplasm; glycolipid synthesis in specimen 2, through significantly high (p ≤ 0.05) carbohydrate (5.51 ± 0.04 cm⁻¹) and high lipid hydrocarbon (17.91 ± 2.3 cm⁻¹) compared with OC CaP, together with positive diastase-digested periodic acid Schiff staining in the majority of metastatic CaP cells; glycolysis in specimen 3, though significantly high (p ≤ 0.05) carbohydrate (8.86 ± 1.78 cm⁻¹) and significantly lower (p ≤ 0.05) lipid hydrocarbon (11.67 ± 0.4 cm⁻¹) than OC CaP, together with negative diastase-digested periodic acid Schiff staining in the majority of metastatic CaP cells. Detailed understanding of the biochemistry underpinning the proliferation of tumour cells at metastatic sites may help towards refining chemotherapeutic treatment.     

Li-cycling properties of nano-crystalline (Ni1 ? xZnx)Fe2O4 (0 ≤ x ≤ 1)

Sol–gel auto-combustion method is adopted to prepare solid solutions of nano-crystalline spinel oxides, (Ni_1 − x Zn _x )Fe₂O₄ (0 ≤ x ≤ 1).The phases are characterized by X-ray diffraction (XRD), high-resolution transmission electron microscopy, selected area electron diffraction, and Brunauer–Emmett–Teller surface area. The cubic lattice parameters, calculated by Rietveld refinement of XRD data by taking in to account the cationic distribution and affinity of Zn ions to tetrahedral sites, show almost Vegard’s law behavior. Galvanostatic cycling of the heat-treated electrodes of various compositions are carried in the voltage range 0.005–3 V vs. Li at 50 mAg⁻¹ up to 50 cycles. Phases with high Zn content x ≥ 0.6 showed initial two-phase Li-intercalation in to the structure. Second-cycle discharge capacities above 1,000 mAh g⁻¹ are observed for all x. However, drastic capacity fading occurs in all cases up to 10–15 cycles. The capacity fading between 10 and 50 cycles is found to be greater than 52% for x ≤ 0.4 and for x = 0.8. For x = 0.6 and x = 1, the respective values are 40% and 18% and a capacity of 570 and 835 mAh g⁻¹ is retained after 50 cycles. Cyclic voltammetry and ex situ transmission electron microscopy data elucidate the Li-cycling mechanism involving conversion reaction and Li–Zn alloying–dealloying reactions.     

Solvent effects on the rate of reaction of Cl2˙− and SO4˙− radicals with unsaturated alcohols

Rate constants have been measured in several aqueous/organic solvent mixtures for the addition reaction of Cl₂^˙? radicals with 2-propen-1-o1 and 2-buten-1-o1 as a function of temperature and with 2, 3-dimethyl-2-butene at room temperature. The rate constants were in the range of 10⁶–10⁹ L mol^?1 s^?1, the activation energies were relatively low (1–10 kJ mol^?1), and the pre-exponential factors varied over the range log A = 7.9 to 9.4. The rate constants (k) decreased (by up to a factor of 30) upon increasing the fraction of organic solvent and log k correlated linearly with the dielectric constant for a given water/organic solvent system, but the lines for the different solvent systems had different slopes. A better correlation of log k was found with a combination of the solvatochromic factor, E_T(30), and the hydrogen-bond donor acidity factor, α. This suggests that the rate of reaction is influenced by the solvent polarity and also by specific solvation of the ionic reactant and product. Solvent effect on the reaction of SO₄^˙? with 2-propen-1-o1 was studied for comparison. © 1993 John Wiley & Sons, Inc.     

GC–MS analysis of low-molecular-weight dicarboxylic acids in atmospheric aerosol: comparison between silylation and esterification derivatization procedures

This paper describes methods for the determination of low-molecular-weight (LMW) dicarboxylic acids in atmospheric aerosols as important chemical tracers for source apportionment of aerosol organics and for studying atmospheric processes leading to secondary organic aerosol formation. The two derivatization procedures most widely used in GC analysis of dicarboxylic acids were compared: esterification using BF₃/alcohol reagent and silylation using N,O-bis(trimethylsilyl)-trifluoroacetamide (BSTFA). The advantages and drawbacks of the two methods are investigated and compared in terms of (1) precision and accuracy of the results and (2) sensitivity and detection limit of the procedure. The comparative investigation was performed on standard solutions containing target C₃–C₉ dicarboxylic acids and on experimental particulate matter (PM) samples. Attention was focused on low-volume sampling devices that collect small amounts of sample for organic speciation. The results show that, overall, both the techniques appear suitable for the analysis of LMW dicarboxylic acids in atmospheric aerosols since they provide low detection limits (≤4 ng m⁻³) and satisfactory reproducibility (RSD% ≤ 15%). Between them, BSTFA should be the reagent of choice under the most limiting conditions of PM filters collected by low-volume air samplers: It provides determination of all the target C₃–C₉ dicarboxylic acids with lower detection limits (≤2 ng m⁻³) and higher reproducibility (RSD% ≤ 10%)      

Ionic conduction of lithium for Perovskite-type compounds, Li x La(1− x )/3NbO3 and (Li0.25La0.25)1− x Sr0.5 x NbO3

Perovskite-type compounds, Li _x La_{(1− x )/3}NbO₃ and (Li_0.25La_0.25)_{1− x} Sr_{0.5 x} NbO₃ as lithium ionic conductors, were synthesized by a solid-state reaction. From powder X-ray diffraction, the solid solution ranges of the two compounds were determined to be 0≤x≤0.25 and 0≤x≤0.125, respectively. In the Li _x La_{(1− x )/3}NbO₃ system, the ionic conductivity of lithium at room temperature, σ₂₅, exhibited a maximum value of 4.7 × 10⁻⁵ S · cm⁻¹ at x = 0.10. However, because of the decrease in the lattice parameters with increasing Li concentration x˙, σ₂₅ of the samples decreased with increasing x from 0.10 to 0.25. Also, in the (Li_0.25La_0.25)_{1− x} Sr_{0.5 x} NbO₃ system, the lattice parameter increased with the increase of Sr concentration and the σ₂₅ achieved a maximum (7.3 × 10⁻⁵ S · cm⁻¹ at 25 °C) at x = 0.125. Received: 12 September 1997 / Accepted: 15 November 1997     

Microwave Exposure Affecting Reproductive System in Male Rats

The object of present study is to investigate the effects of 50 GHz microwave frequency electromagnetic fields on reproductive system of male rats. Male rats of Wistar strain were used in the study. Animals 60 days old were divided into two groups—group I sham exposed and group II experimental (microwave exposed). During exposure, rats were confined in Plexiglas cages with drilled ventilation holes for 2 h a day for 45 days continuously at a specified specific absorption rate of 8.0 × 10⁻⁴ W/kg. After the last exposure, the rats were sacrificed immediately and sperms were collected. Antioxidant enzyme (superoxide dismutase (SOD), glutathione peroxidase (GPx), and catalase), histone kinase, apoptosis, and cell cycle were analyzed in sperm cells. Result shows a significant decrease in the level of sperm GPx and SOD activity (p ≤ 0.05), whereas catalase shows significant increase in exposed group of sperm samples as compared with control (p < 0.02). We observed a statistically significant decrease in mean activity of histone kinase as compared to the control (p < 0.016). The percentage of cells dividing in a spermatogenesis was estimated by analyzing DNA per cell by flow cytometry. The percentage of apoptosis in electromagnetic field exposed group shows increased ratio as compared to sham exposed (p < 0.004). There were no significant differences in the G₀/G₁ phase; however, a significant decrease (p < 0.026) in S phase was obtained. Results also indicate a decrease in percentage of G₂/M transition phase of cell cycle in exposed group as compared to sham exposed (p < 0.019). We conclude that these radiations may have a significant effect on reproductive system of male rats, which may be an indication of male infertility.     

Low-temperature Data for Carbon Dioxide

Summary. We investigated empirical data for the vapor pressure (154≤T≤196 K) and the heat capacity (12.52≤T≤189.78 K) of solid carbon dioxide. A computer algebra system (CAS) was used for all calculations. From the numerical point of view, we have adopted a cubic piecewise polynomial representation for the heat capacity and reached an excellent agreement between the available empirical data and the calculated ones. Furthermore, we have obtained values for the vapor pressure and heat of sublimation at temperatures below 195 right down to 0 K. The theoretical key prerequisites are: 1) Determination of the heat of sublimation of 26250 J · mol⁻¹ at vanishing temperature and 2) Elaboration of a ‘linearized’ vapor pressure equation that includes all the relevant properties of the gaseous and solid phases. It is shown that: 1) The empirical vapor pressure equation derived by Giauque & Egan remains valid below the assumed lower limit of 154 K (a similar argument holds for Antoine’s equation), 2) The heat of sublimation reaches its maximum value of 27211 J · mol⁻¹ at 58.829 K and 3) The vapor behaves as a (polyatomic) ideal gas even for temperatures below 150 K.     

Low-temperature Data for Carbon Dioxide

We investigated empirical data for the vapor pressure (154≤T≤196 K) and the heat capacity (12.52≤T≤189.78 K) of solid carbon dioxide. A computer algebra system (CAS) was used for all calculations. From the numerical point of view, we have adopted a cubic piecewise polynomial representation for the heat capacity and reached an excellent agreement between the available empirical data and the calculated ones. Furthermore, we have obtained values for the vapor pressure and heat of sublimation at temperatures below 195 right down to 0 K. The theoretical key prerequisites are: 1) Determination of the heat of sublimation of 26250 J · mol⁻¹ at vanishing temperature and 2) Elaboration of a ‘linearized’ vapor pressure equation that includes all the relevant properties of the gaseous and solid phases. It is shown that: 1) The empirical vapor pressure equation derived by Giauque & Egan remains valid below the assumed lower limit of 154 K (a similar argument holds for Antoine’s equation), 2) The heat of sublimation reaches its maximum value of 27211 J · mol⁻¹ at 58.829 K and 3) The vapor behaves as a (polyatomic) ideal gas even for temperatures below 150 K.     

Ab initio SCRF study of solvent effect on the nonlinear polarizabilities of different intramolecular charge-transfer molecules

The macroscopic solvent effect on static nonlinear polarizabilities of a number of intramolecular charge-transfer (ICT) molecules have been studied by using the self-consistent-reaction field (SCRF) model in the framework of ab initio time-dependent-HF (TDHF) method using 3-21G basis set. The two-state model of static β and <γ> have been used to obtain their functional dependence on the ground-state hardness parameter, dipole moment and solvation energy. The methyl substituted 4-quinopyran and other zwitterionic molecules are found to exhibit strong diminution of both quadratic and cubic polarizabilities at higher solvent reaction field due to negative solvatochromic effect. However, molecules showing positive solvatochromism lead to strong enhancement of the NLO response on increase in solvent polarity. The evolution pattern of the solvent modulated static β and <γ> of 4-quinopyran (4QP) obtained for varying inter-ring torsion angle differ strikingly from that shown by p-amino p'-nitro biphenyl (ANB).     

Determination of enzyme activity inhibition by FTIR spectroscopy on the example of fructose bisphosphatase

A mid-infrared enzymatic assay for label-free monitoring of the enzymatic reaction of fructose-1,6-bisphosphatase with fructose 1,6-bisphosphate has been proposed. The whole procedure was done in an automated way operating in the stopped flow mode by incorporating a temperature-controlled flow cell in a sequential injection manifold. Fourier transform infrared difference spectra were evaluated for kinetic parameters, like the Michaelis–Menten constant (K _M) of the enzyme and V _max of the reaction. The obtained K _M of the reaction was 14 ± 3 g L⁻¹ (41 μM). Furthermore, inhibition by adenosine 5′-monophosphate (AMP) was evaluated, and the K _M^App value was determined to be 12 ± 2 g L⁻¹ (35 μM) for 7.5 and 15 μM AMP, respectively, with V _max decreasing from 0.1 ± 0.03 to 0.05 ± 0.01 g L⁻¹ min⁻¹. Therefore, AMP exerted a non-competitive inhibition.