Studies on the hydrogen bonding of aniline's derivatives by FT-IR

The hydrogen bonding of 23 aniline's derivatives in various solvents and in solid states are studied by Fourier transform infrared spectroscopy. The Infrared absorption of their amino group is greatly influenced by solvents. Compared with those data determined in hexane, the symmetric stretching frequency (nu(s)) and asymmetric stretching frequency (nu(as)) of amino group have an obvious bathochromic shift in benzene, but a relatively smaller shift in CCl4. It is also found that the concentration of these compounds has very little effect on the frequencies, the band shapes and relative absorption intensities of amino group. This indicates that the intermolecular hydrogen bonds are very weak between the aniline's derivatives in the solution. The substituent of methyl (-CH3) has different electronic effects in organic solvents with various polarities. Methyl group behaves as an electron-donating functional group in hexane, however, it shows an electron-withdrawing effect in benzene. When methoxyl (CH3O-) is ortho-substituted, v(as) of amino group increases and nu(s) almost does not change. While methoxyl (CH3O-) is meta-substituted, v(as) of amino group increases, but nu(s) decreases. The groups of chloro- (Cl-) and nitro- (-NO2) cause a hyposochromic shift of the nu(as) and nu(s) of amino group, while substituent of -NH2 makes a bathochromic shift. The solvents influence the relative intensities of nu(as) and nu(s) of amino group more greatly than the substituents do. In solid states, the amino group of aniline's derivatives has more than two absorption bands because of forming the inter- or intra-molecular hydrogen bonds.     

Simultaneous protection and activation of amino acids using propargyl pentafluorophenyl carbonate

[reaction: see text] A very efficient method for the simultaneous protection of the amino group and activation of the carboxyl group of amino acids is reported using propargyl pentafluorophenyl carbonate (PocOPfp). The amino group is protected as a propargyloxycarbonyl (Poc) derivative, and the carboxyl group is activated as a pentafluorophenyl ester. The yields obtained are good to excellent ranging from 60 to 87%.     

Liquid chromatographic resolution of secondary amino alcohols on a chiral stationary phase based on (+)-(18-crown-6)-2,3,11,12-tetracarboxylic acid Dependence of temperature effect on analyte structure

Two types of secondary amino alcohols were successfully resolved on a liquid chromatographic chiral stationary phase based on (+)-(18-crown-6)-2,3,11,12-tetracarboxylic acid. The secondary amino alcohols containing a secondary amino group connected directly to the stereogenic center were resolved much better than those containing a hydroxyl group attached directly to the stereogenic center. In addition, the dependence of the separation factor (alpha) on column temperature was exactly opposite for the two different types of secondary amino alcohols. From the thermodynamic calculations based on Van't Hoff plots, we conclude that the enantioselectivity for the resolution of the secondary amino alcohols containing a secondary amino group connected directly to the stereogenic center is enthalpically controlled while that for the resolution of the secondary amino alcohols containing a hydroxyl group attached directly to the stereogenic center is entropically controlled.     

Use of tosylaminocarbonyl group as an amino protecting group in peptide chemistry]

Several N-tosylaminocarbonyl amino acids and corresponding di- and tripeptides were prepared in order to investigate the suitability of the tosylaminocarbonyl group as an amino protecting group in peptide chemistry. The group is shown to be selectively cleavable under neutral conditions.     

Quantum chemical studies on the tautomerism of some potentially tautomeric aminoindazole derivatives

The aqueous phase AM1, PM3, and PM5 calculation data had indicated that when a potentially tautomeric amino group is placed at 3C position of the indazole ring the ring-chain tautomerism becomes feasible. However, when the amino group is placed at 4–7C of the indazole ring only the annular tautomerism was found to be feasible and no effect of amino group to provoke a ring chain tautomerism was observed. On the other hand amino form of 3 amino substituted indazole was found to be predominant over imino forms whereas for the 4–7 amino substituted indazoles imino forms were found to be predominant over amino forms. The attempt to apply soft–hard base and soft nucleophile–electrophile criteria to protonation and tautomerism phenomena was successful.     

X-Ray Diffraction Study of 2-Aminopropenenitrile at 97 K

2-Aminopropenenitrile crystallizes in the space group P2₁2₁2₁ with two molecules in the asymmetric unit. Both molecules show appreciable pyramidalization at the amino group. The crystal structure is built from approximately centrosymmetric dimers stabilized by hydrogen bonding between the amino group of each molecule and the nitrile group of its partner. The dimers are linked into chains by further hydrogen bonds in which the amino group of one molecule acts as donor, the amino group of the other as acceptor. The two types of molecule thus play different roles in the crystal structure. Electron density difference maps for the two independent molecules show characteristic bonding density features. The molecular structure as obtained by the low-temperature X-ray analysis is closely similar to that derived from ab initio molecular orbital calculations and leads to rotational constants close to those obtained from a microwave spectroscopic study.     

Asymmetric synthesis of fluorinated amino macrolactones through ring-closing metathesis

The synthesis of new chiral fluorinated amino and azamacrolactones of types 1 and 2 is described. A ring-closing metathesis (RCM) reaction constitutes the key step in this methodology, which uses fluorinated amino alcohols 7 as starting materials. The influence of the CF2 group, which is located in the alpha-position relative to the carbon bearing the amino group, on the efficiency of the RCM reaction is noteworthy. This method allows for the preparation of the desired fluorinated macrolactones in excellent yields.     

α‐Amino Acid‐Isosteric α‐Amino Tetrazoles

The synthesis of all 20 common natural proteinogenic and 4 otherα‐amino acid‐isosteric α‐amino tetrazoles has been accomplished, whereby the carboxyl group is replaced by the isosteric 5‐tetrazolyl group. The short process involves the use of the key Ugi tetrazole reaction followed by deprotection chemistries. The tetrazole group is bioisosteric to the carboxylic acid and is widely used in medicinal chemistry and drug design. Surprisingly, several of the common α‐amino acid‐isosteric α‐amino tetrazoles are unknown up to now. Therefore a rapid synthetic access to this compound class and non‐natural derivatives is of high interest to advance the field.     

Synthesis of tetrazole analogues of amino acids using Fmoc chemistry: isolation of amino free tetrazoles and their incorporation into peptides

An efficient synthesis of tetrazole analogues of amino acids starting from N^α-Fmoc amino acid in a three-step protocol is reported. The free amino tetrazoles were obtained in good yields and with excellent purity after removal of the Fmoc group. The synthesis of analogues of aspartic and glutamic acids in which the 5-tetrazolyl moiety is inserted at the β/γ carboxyl group starting from Fmoc-Asn and Fmoc-Gln and the incorporation of these tetrazoles into peptides are also described.     

o-Nitrobenzoyl group as a new amino protecting group for peptide synthesis and the synthesis of some anthranilyl peptides

N (o-nitrobenzoyl)amino acids can be coupled with other amino acids using DCC and the resulting product on hydrogenation gives peptides, containing the anthranilyl group as —NH₂ end group. N (anthranilyl)amino acids or peptides can also be obtained by reaction of isatoic anhydride on amino acids or peptides. The anthranilyl end group is easily cleaved by metal (Cu⁺²) catalysed hydrolysis to give α-amino acid peptides and the insoluble copper(II) anthranilate.     

Kinetic studies of the on/off reaction of the amino group in the side chain of Cu(II), Ni(II), and Co(II) complexes with 14-membered tetraazamacrocycles

The kinetics of the on/off reaction of the amino group in the side chain of tetraazamacrocyclic Cu2+, Ni2+ and Co2+ complexes has been measured. The rate law k(obs)=k(0)+k(H)[H+]+k(OH)/[H+], the sum of the forward and reverse reaction, gives rise to u-shaped pH dependences from which the three rate constants can be determined. k(H) describes the proton assisted dissociation of the amino group bound to the metal ion and is roughly correlated to the equilibrium constant of the reaction. k(OH) is determined by the protonation constant of the free amino group and the rate constant describing the binding of the amino group to the metal ion. k(0) is composed of the rate constant for the opening of the chelate ring without proton assistance and the rate for the reactivity of the ammonium group in the formation of the chelate ring. Our results show that the rates of the opening and closing of the chelate ring are very little dependent on the nature of the metal ion.     

5-(2-羧基苯基)-10,15,20-三苯基卟啉对氨基酸酯的分子识别模型研究

对氨基酸及其衍生物的分子识别一直是仿生化学领域中的重要课题.以金属卟啉配合物作为主体分子对氨基酸酯的分子识别是最近几年来的热点之一^[15].氨基酸是蛋白质的主要组成部分,在蛋白质合成过程中,对氨基酸及其衍生物的识别是关健的一步.     

Matrix-assisted laser desorption/ionization signal enhancement of peptides by picolinamidination of amino groups

Picolinamidination of amino groups in peptides was carried out using ethyl picolinimidate tetrafluoroborate synthesized from picolinamide and triethyloxonium tetrafluoroborate. The N-terminal amino group as well as the epsilon-amino group of lysine were derivatized. The matrix-assisted laser desorption/ionization (MALDI) signal of a peptide was enhanced 20-35-fold upon picolinamidination depending on the number of amino groups derivatized. The signal enhancement effect is much higher than that of acetamidination or guanidination previously reported. Improved protein identification by mass mapping of the derivatized peptides was demonstrated.     

Catalyst functional group cooperativity in the amino acid-catalysed nitroaldol condensation reaction

Several amino acids and their derivatives have been evaluated as organic catalysts for the nitroaldol reaction. It was found that when an unprotected amino group and an unprotected carboxylate group were present in the organocatalyst, both the nitroaldol reaction and subsequent elimination could occur to afford nitroalkenes from aromatic aldehydes and nitromethane. The best results were obtained by use of γ-amino acids derived from l-glutamine. It is suggested that the amino group is important for intermediate Schiff base formation and that the free carboxylate group facilitates the elimination step.     

Proton affinity of amino acids: Their interpretation with density functional theory-based descriptors

The calculation of group electronegativity and hardness for amino acid “functional groups,” considered as a biradical taken out of their protein environment, is performed for both the α-helix and β-sheet geometry of these amino acids. Group electronegativity and hardness are then used to interpret the experimental gas-phase proton affinity sequence of the amino acids. Group hardness was found to play the dominant role, whereas group electronegativity only had a minor influence on the sequence, thereby stressing the importance of the charged form in the acid-base equilibrium. An explanation for the deviations, seen for some of the amino acids, from the correlation between these group properties and the proton affinity was sought. © 1996 John Wiley & Sons, Inc.     

The gas-phase H/D exchange mechanism of protonated amino acids

A mass spectrometry and Density Functional Theory study of gas-phase H/D exchange in protonated Ala, Cys, Ile, Leu, Met, and Val is reported. Site-specific rate constants were determined and results identify the alpha-amino group as the protonation site. Lack of exchange on the Cys thiol group is explained by the absence of strong intramolecular hydrogen bonding within the reaction complex. In aliphatic amino acids the presence of a methyl group at the beta-C atom was found to lower the site-specific H/D exchange rate for amino hydrogens. Study of the exchange mechanism showed that isotopic exchange occurs in two independent reactions: in one, only the carboxylic hydrogen is exchanged and in the other, both carboxylic and amino group hydrogens exchange. The proposed reaction mechanisms, calculated structures of various species, and a number of structural findings are consistent with experimental data.     

Multi‐Molar Absorption of CO2 by the Activation of Carboxylate Groups in Amino Acid Ionic Liquids

A new strategy for multi‐molar absorption of CO₂ is reported based on activating a carboxylate group in amino acid ionic liquids. It was illustrated that introducing an electron‐withdrawing site to amino acid anions could reduce the negative inductive effect of the amino group while simultaneously activating the carboxylate group to interact with CO₂ very efficiently. An extremely high absorption capacity of CO₂ (up to 1.69 mol mol^?1) in aminopolycarboxylate‐based amino acid ionic liquids was thus achieved. The evidence of spectroscopic investigations and quantum‐chemical calculations confirmed the interactions between two kinds of sites in the anion and CO₂ that resulted in superior CO₂ capacities.     

Selective Fmoc and Cbz protection of aromatic amino group in the presence of similar aliphatic function in liquid CO2

The selective protection of an aromatic amino group in the presence of aliphatic amino group in diamines by the action of FmocCl or CbzCl using liquid CO₂ as the solvent has been proposed. The developed method is preparative, does not require complex purification of the product, and meets the principles of green chemistry.     

LA PHOTOOXYDATION DU GROUPE PEPTIDE—II. PEPTIDES ET POLYAMINOACIDES A L‘ÉTAT SOLIDE*

Abstract— The determination of glyoxylic and pyruvic acids in oligo-and poly-, glycine and alanine shows that the peptide group is photooxydized, probably with the radical -NH-CR-CO- as an intermediate. The characterisation of pyruvic acid in glutathione and oxydized glutathione confirms the photolysis of the C-S bond in combined cysteine and cystine. Finally, a comparison of the photoreactivity of peptides of the types aliphatic amino acid-aromatic amino acid and aromatic amino acid-aliphatic amino acid allows us to propose a selective mechanism for the transfer of excitation energy from the phenyl group to the preceding amino acid residue in the polypeptide chain.     

氨基酸卟啉锌配合物对氨基酸酯的分子识别研究(英文)

用紫外可见吸收光谱滴定方法研究了一种新型的苏氨酸卟啉锌配合物(主体)对氨基酸酯(客体)的分子识别.这种锌卟啉可以与氨基酸酯形成 1:1和 1:2的两种加合物.氨基酸酯的氨基首先与氨基酸残基的羧基作用形成 1:1的加合物,然后与锌卟啉的中央锌原子配位形成 1:2的加合物,客体分子与主体分子上的氨基酸残基之间的排斥作用以及主客体之间的色散力作用是主体分子能识别客体分子的另外两种作用。