A rapid method for the determination of benzylpenicillin in serum by reversed-phase HPLC

A simple procedure for the determination of benzylpenicillin in serum is described. The assay involves the extraction of the drug and the internal standard (phenoxymethylpenicillinic acid) from the sample into dichloromethane, using tetrabutylammonium hydrogen sulfate neutralized with NaOH and buffered with citrate as an ion-pairing reagent. RP-HPLC was performed on a Spherisorb 5 ODS column, eluting the drugs isocratically with 14% acetonitrile in 10 mM ammonium acetate buffer. Monitoring was by UV detection at 208 nm. Our results show that the method is accurate and reproducible, permitting quantification of serum levels of benzylpenicillin without interference from other drugs commonly used in therapy. Analytical recovery was greater than 79.2%.     

Effect of amine nature on reaction mechanism: aminolyses of o-4-nitrophenyl thionobenzoate with primary and secondary amines

Pseudo-first-order rate constants (k(obs)) have been measured spectrophotometrically for reactions of O-4-nitrophenyl thionobenzoate (2) with a series of primary and acyclic secondary amines. The plots of k(obs) vs amine concentration are linear for the reaction of 2 with primary amines. The slope of the Br?nsted-type plot for the reaction of 2 with primary amines decreases from 0.77 to 0.17 as the amine basicity increases, indicating that the reaction proceeds through a zwitterionic addition intermediate in which the rate-determining step changes from the breakdown of the intermediate to the reaction products to the formation of the intermediate as the amine basicity increases. On the other hand, for reactions with all the acyclic secondary amines studied, the plot of k(obs) vs amine concentration exhibits an upward curvature, suggesting that the reaction proceeds through two intermediates, e.g., a zwitterionic addition intermediate and an anionic intermediate. The microscopic rate constants (k(1), k(-)(1), k(2), and k(3) where available) have been determined for the reactions of 2 with all the primary and secondary amines studied. The k(1) value is larger for the reaction with the primary amine than for the reaction with the isobasic acyclic secondary amines, while the k(-)(1) value is much larger for the latter reaction than for the former reaction. The k(3) value for the reaction with secondary amine is independent of the amine basicity. The small k(2)/k(-)(1) ratio is proposed to be responsible for the deprotonation process observed in aminolyses of carbonyl or thiocarbonyl derivatives.     

Hydrolyse basique comparee d'esters allophaniques et phosphoriques en milieu mixte acetonitrile/eau faiblement aqueux; mise en evidence d'une entite catalytique,intermediaire de la reaction entre base et solvant

Kinetic study of base catalysed hydrolysis in acetonitrile-water Mixtures of allophanic esters (models of carboxybiotine) and phosphoric esters shows in the range of low water content (less than 1 molar) an enhancement in rate (10³) with a maximum at 0.1–0.3 molar in water. This rate enhancement is ascribed to ground state desolvation and the maximum is interpreted by a change in the rate determining step : leaving group departure in the tetrahedral intermediate is indeed the slow step for the reactions in acetonitrile/water mixture less than 0.1 molar in water. For charged phosphoric esters the rate enhancement from an aqueous medium (pH=10) to organic is larger since as high as 10⁶.On the other hand, in such a medium, an additional catalytic effect is observed; it is shown that it is due to the formation of a reactive species which results from reaction of the base on acetamide when accumulated in the medium from base catalysed hydrolysis of the solvent.     

Kinetics and mechanism of the aminolysis of O-aryl S-methyl thiocarbonates

[reaction: see text] The reactions of secondary alicyclic (SA) amines and quinuclidines (QUI) with 4-nitrophenyl and 2,4-dinitrophenyl S-methyl thiocarbonates (1 and 2, respectively) and those of SA amines with 2,3,4,5,6-pentafluorophenyl S-methyl thiocarbonate (3) are subjected to a kinetic study in aqueous solution, at 25.0 degrees C, and an ionic strength of 0.2 M (KCl). The reactions of thiocarbonates 1, 2, and 3 were followed spectrophotometrically at 400, 360, and 220 nm, respectively. Under amine excess, pseudo-first-order rate coefficients (k(obsd)) are found. Plots of k(obsd) vs amine concentration at constant pH are linear, with the slope (kN) independent of pH. The Br?nsted-type plots (log kN vs pKa of aminium ions) are linear for all the reactions, with slopes beta = 0.9 for those of 1 with SA amines and QUI, beta = 0.36 and 0.57 for the reactions of 2 with SA amines and QUI, respectively, and beta = 0.39 for the reactions of SA amines with 3. The magnitude of the slopes indicates that both aminolyses of 1 are governed by stepwise mechanisms, through a zwitterionic tetrahedral intermediate (T+/-), where expulsion of the nucleofuge from T+/- is the rate-determining step. The values of the Br?nsted slopes found for the aminolyses of thiocarbonates 2 and 3 suggest that these reactions are concerted. By comparison of the reactions under investigation between them and with similar aminolyses, the following conclusions arise: (i) Thiocarbonate 2 is more reactive than 1 toward the two amine series. (ii) The change of the nonleaving group from MeO in 4-nitrophenyl methyl carbonate to MeS in thiocarbonate 1 results in lower kN values. (iii) The greater reactivity of this carbonate than thiocarbonate 1 is attributed to steric hindrance of the MeS group, compared to MeO toward amine attack. (iv) The change of a pyridine to an isobasic SA amine or QUI destabilizes the T+/- intermediate formed in the aminolyses of 2. (v) The change of 4-nitrophenoxy to 2,3,4,5,6-pentafluorphenoxy or 2,4-dinitrophenoxy as the leaving group destabilizes the tetrahedral intermediate formed in the reactions with SA amines, changing the mechanism from a stepwise process to a concerted reaction.     

Strategies for phosphodiester complexation and cleavage

Abstract

Staphylococcal nuclease catalyses the hydrolysis of DNA phosphate linkages with a rate enhancement of the order of 10¹⁶. The active site possesses two guanidinium groups and a Ca²⁺, all of which are proposed to stabilize the formation of the phosphorane intermediate formed along the hydrolysis reaction pathway. In an attempt to achieve a fraction of the natural rate enhancement in aqueous media, several receptors possessing guanidinium groups preorganized and complementary to a phosphodiester have been synthesized. The guanidinium receptor designs were based upon analysis of multiple polyazaclefts used to study the binding of phosphodiesters in nonaqueous media. The spatial relationships of the hydrogen bonding groups with respect to each other are found to be crucial to the strength of binding, with spacers that hold the hydrogen bonding groups at a slightly greater distance than isophthaloyl spacers being optimum. The bis-guanidinium receptors do enhance the cleavage of RNA at low equivalents of the receptors to RNA phosphates. A quantitative assay to measure rates of RNA hydrolysis at 37 °C is briefly discussed.     

Nucleophilicity toward ketenes: rate constants for addition of amines to aryl ketenes in acetonitrile solution.

Second-order rate constants (k(Nu)) have been measured for the addition of amines to ketenes 4-6 in acetonitrile solution by the laser flash photolysis technique. These ketenes are formed from a photochemical Wolff rearrangement of diazoketones 1-3, respectively. For all diazoketones studied, the presence of amines as nucleophiles in the reaction medium results in the formation of an intermediate that later converts to the amide. The rate of formation of these intermediates is linearly dependent on amine concentration. Various classes of amines, such as primary, secondary, and tertiary, aromatic, and aliphatic, have been used to investigate the ketene reactivity, and rate constants in the range 10(4)-10(9) M(-1) s(-1) have been measured. Reaction rates are dependent upon steric effects in both the ketene and the nucleophile, which is consistent with a reaction mechanism involving nucleophilic attack at Calpha in the molecular plane of the ketene. On the basis of these data, a set of N(+) parameters for the reaction of amines with ketenes was determined.     

Kinetic study of the aminolysis and pyridinolysis of O-phenyl and O-ethyl O-(2,4-dinitrophenyl) thiocarbonates. A remarkable leaving group effect

The reactions of a series of secondary alicyclic (SA) amines with O-phenyl and O-ethyl O-(2,4-dinitrophenyl) thiocarbonates (1 and 2, respectively) and of a series of pyridines with the former substrate are subjected to a kinetic investigation in water, at 25.0 degrees C, ionic strength 0.2 M (KCl). Under amine excess over the substrate, all the reactions obey pseudo-first-order kinetics and are first-order in amine. The Br?nsted-type plots are biphasic, with slopes (at high pK(a)) of beta(1) = 0.20 for the reactions of SA amines with 1 and 2 and beta(1) = 0.10 for the pyridinolysis of 1 and with slopes (at low pK(a)) of beta(2) = 0.80 for the reactions of SA amines with 1 and 2 and beta(2) = 1.0 for the pyridinolysis of 1. The pK(a) values at the curvature center (pK(a)(0)) are 7.7, 7.0, and 7.0, respectively. These results are consistent with the existence of a zwitterionic tetrahedral intermediate (T++) and a change in the rate-determining step with the variation of amine basicity. The larger pK(a)(0) value for the pyridinolysis of 1 compared to that for 2 (pK(a)(0) = 6.8) and the larger pK(a)(0) value for the reactions of SA amines with 1 relative to 2 are explained by the greater inductive electron withdrawal of PhO compared to EtO. The larger pK(a)(0) values for the reactions of SA amines with 1 and 2, relative to their corresponding pyridinolysis, are attributed to the greater nucleofugalities of SA amines compared to isobasic pyridines. The smaller pK(a)(0) value for the reactions of SA amines with 2 than with O-ethyl S-(2,4-dinitrophenyl) dithiocarbonate (pK(a)(0) = 9.2) is explained by the greater nucleofugality from T(++) of 2,4-dinitrophenoxide (DNPO(-)) relative to the thio derivative. The stepwise reactions of SA amines with 1 and 2, in contrast to the concerted mechanisms for the reactions of the same amines with the corresponding carbonates, is attributed to stabilization of T(++) by the change of O(-) to S(-). The simple mechanism for the SA aminolysis of 2 (only one tetrahedral intermediate, T(++)) is in contrast to the more complex mechanism (two tetrahedral intermediates, T(++) and T(-), the latter formed by deprotonation of T(++) by the amine) for the same aminolysis of the analogous thionocarbonate with 4-nitrophenoxide (NPO(-)) as nucleofuge. To our knowledge, this is the first example of a remarkable change in the decomposition path of a tetrahedral intermediate T by replacement of NPO(-) with DNPO(-) as the leaving group of the substrate. This is explained by (i) the greater leaving ability from T(++) of DNPO(-) than NPO(-) and (ii) the similar rates of deprotonation of both T(++) (formed with DNPO and NPO).     

Aminolysis of 4-nitrophenyl phenyl carbonate and thionocarbonate: effects of amine nature and modification of electrophilic center from C[double bond]O to C[double bond]S on reactivity and mechanism

A kinetic study is reported for the reactions of 4-nitrophenyl phenyl carbonate (5) and thionocarbonate (6) with a series of alicyclic secondary amines in 80 mol% H(2)O-20 mol% DMSO at 25.0 +/- 0.1 degrees C. The plots of k(obsd) vs. amine concentration are linear for the reactions of 5. On the contrary, the plots for the corresponding reactions of 6 curve upward as a function of increasing amine concentration, indicating that the reactions proceed through two intermediates (i.e., a zwitterionic tetrahedral intermediate T(+/-) and its deprotonated form T(-)). The Br?nsted-type plot for 5 the reactions of with secondary amines exhibits a downward curvature, i.e., the slope decreases from 0.98 to 0.26 as the pK(a) of the conjugate acid of amines increases, implying that the reactions proceed through T(+/-) with a change in the rate-determining step (RDS). The k(N) values are larger for the reactions of with secondary amines than for those with primary amines of similar basicity. Dissection of k(N) values for the reactions of 5 into the microscopic rate constants (i.e., k(1) and k(2)/k(-1) ratio) has revealed that k(1) is larger for the reactions with secondary amines than for those with isobasic primary amines, while the k(2)/k(-1) ratio is nearly identical. On the other hand, for reactions of 6, secondary amines exhibit larger k(1) values but smaller k(2)/k(-1) ratios than primary amines. The current study has shown that the reactivity and reaction mechanism are strongly influenced by the nature of amines (primary vs. secondary amines) and electrophilic centers (C[double bond]O vs. C[double bond]S).     

Concerted mechanisms of the reactions of 2,4,6-trinitrophenyl methyl carbonate and 2,4,6-trinitrophenyl acetate with secondary alicyclic amines

The reactions of secondary alicyclic amines with 2,4,6-trinitrophenyl methyl carbonate (TNPMC) and 2,4,6-trinitrophenyl acetate (TNPA) are subjected to a kinetic study in aqueous solution, 25.0 degrees C, ionic strength 0.2 (KCl). The reactions are studied by following spectrophotometrically (360 nm) the release of the 2,4,6-trinitrophenoxide anion. Under amine excess, pseudo-first-order rate coefficients (k(obsd)) are found. Plots of k(obsd) vs [amine] are linear, with the slope (kN) independent of pH. The Br?nsted-type plots (log k(N) vs pK(a) of the conjugate acid of the amines) are linear, with slopes beta = 0.41 and beta = 0.36 for the reactions of TNPA and TNPMC, respectively. The predicted breaks of the Br?nsted plots for stepwise mechanisms are pK(a)0 = 6.8 and 7.3, respectively. The lack of Br?nsted breaks for these reactions and the values of the Br?nsted slopes are consistent with concerted mechanisms. By comparison of the reactions under investigation among them and with similar aminolysis and pyridinolysis, the following conclusions can be drawn: (i) Secondary alicyclic amines react with TNPA and TNPMC by concerted mechanisms. (ii) TNPA is more reactive toward these amines than TNPMC due to the greater electron release of MeO from the latter substrate. (iii) The change of 2,4-dinitrophenoxy to 2,4,6-trinitrophenoxy in the zwitterionic tetrahedral intermediate (T+/-) formed in the reactions of the title amines with 2,4-dinitrophenyl acetate greatly destabilizes T+/-. (iv) Secondary alicyclic amines destabilize T+/- relative to pyridines. (v) The intermediate T+/- formed in the reactions of the title amines with S-(2,4,6-trinitrophenyl) acetate is greatly destabilized by substitution of S-(2,4,6-trinitrophenyl) by O-(2,4,6-trinitrophenyl) as the leaving group.     

Kinetic study of the phenolysis of bis(4-nitrophenyl) carbonate, bis(4-nitrophenyl) thionocarbonate, and methyl 4-nitrophenyl thionocarbonate

The reactions of a homogeneous series of phenols with bis(4-nitrophenyl) carbonate (BNPC), bis(4-nitrophenyl) thionocarbonate (BNPTOC), and methyl 4-nitrophenyl thionocarbonate (MNPTOC) are subjected to a kinetic investigation in water, at 25.0 degrees C and ionic strength of 0.2 M (KCl). Under excess of phenol over the substrate, all the reactions obey pseudo-first-order kinetics and are first order in phenoxide anion. The reactions of BNPC show a linear Br?nsted-type plot with slope beta = 0.66, consistent with a concerted mechanism (one step). In contrast, those of BNPTOC and MNPTOC show biphasic Br?nsted-type plots with slopes beta = 0.30 and 0.44, respectively, at high pK(a), and beta = 1.25 and 1.60, respectively, at low pK(a), consistent with stepwise mechanisms. For the reactions of both thionocarbonates, the pK(a) value at the center of the Br?nsted plot (pK(a)(0)) is 7.1, which corresponds to the pK(a) of 4-nitrophenol. This confirms that the phenolyses of the thionocarbonates are stepwise processes, with the formation of an anionic tetrahedral intermediate. By the comparison of the kinetics and mechanisms of the title reactions with similar reactions, the following conclusions can be drawn: (i) Substitution of S(-) by O(-) in an anionic tetrahedral intermediate (T(-)) destabilizes it. (ii) The change of MeO by 4-nitrophenoxy in T(-) results in an increase of both the rate constant and equilibrium constant, for the formation of T(-), and also in an enlargement of the rate coefficient for the expulsion of 4-nitrophenoxide from T(-). (iii) Substitution of an amino group in a tetrahedral intermediate by ArO destabilizes it. (iv) Secondary alicyclic amines and other amines show greater reactivity toward MNPTOC than isobasic phenoxide anions.     

Effects of amine nature and nonleaving group substituents on rate and mechanism in aminolyses of 2,4-dinitrophenyl X-substituted benzoates

Second-order rate constants have been measured for the reactions of 2,4-dinitrophenyl X-substituted benzoates (1a-f) with a series of primary amines in 80 mol % H(2)O/20 mol % DMSO at 25.0 +/- 0.1 degrees C. The Br?nsted-type plot for the reactions of 1d with primary amines is biphasic with slopes beta(1) = 0.36 at the high pK(a) region and beta(2) = 0.78 at the low pK(a) region and the curvature center at pK(a) degrees = 9.2, indicating that the reaction proceeds through an addition intermediate with a change in the rate-determining step as the basicity of amines increases. The corresponding Br?nsted-type plot for the reactions with secondary amines is also biphasic with beta(1) = 0.34, beta(2) = 0.74, and pK(a) degrees = 9.1, indicating that the effect of amine nature on the reaction mechanism and pK(a) degrees is insignificant. However, primary amines have been found to be less reactive than isobasic secondary amines. The microscopic rate constants associated with the aminolysis have revealed that the smaller k(1) for the reactions with primary amines is fully responsible for their lower reactivity. The electron-donating substituent in the nonleaving group exhibits a negative deviation from the Hammett plots for the reactions of 1a-f with primary and secondary amines, while the corresponding Yukawa-Tsuno plots are linear. The negative deviation has been ascribed to stabilization of the ground state of the substrate through resonance interaction between the electron-donating substituent and the carbonyl functionality.     

A reversed phase liquid chromatographic method for the simultaneous determination of several common penicillins in human serum

A rapid and sensitive high performance liquid chromatographic method is described for the simultaneous determination of benzylpenicillin, ampicillin, phenoxymethylpenicillin, cloxacillin, dicloxacillin and nafcillin in small samples of human serum. The chromatographic system involves the use of a Spherisorb ODS reversed phase column and a gradient elution with 1 mM ammonium acetate buffer/acetonitrile (from 90:10 to 75:25 in 15 min). Detection and quantification are monitored by UV absorption at 208 nm. The compounds are extracted with dichloromethane, using tetrabutylammonium hydrogen sulfate neutralized with sodium hydroxide and buffered with borate as an ion pairing reagent; beta-hydroxyethyltheophylline is added as an internal standard. Our results show that the method is accurate and reproducible, allowing quantification of serum levels of assayed penicillins (0.5-50 micrograms/mL) without interference from other drugs commonly used in therapy. Recoveries were generally greater than 79.4%.     

Effect of amine nature on reaction rate and mechanism in nucleophilic substitution reactions of 2,4-dinitrophenyl X-substituted benzenesulfonates with alicyclic secondary amines

Second-order rate constants have been measured for reactions of 2,4-dinitrophenyl X-substituted benzenesulfonates with a series of alicyclic secondary amines. The reaction proceeds through S-O and C-O bond fission pathways competitively. The S-O bond fission occurs more dominantly as the amine basicity increases and the substituent X in the sulfonyl moiety becomes more strongly electron withdrawing, indicating that the regioselectivity is governed by the amine basicity as well as the electronic nature of the substituent X. The S-O bond fission proceeds through an addition intermediate with a change in the rate-determining step at pK(a) degrees = 9.1. The secondary amines are more reactive than primary amines of similar basicity for the S-O bond fission. The k(1) value has been determined to be larger for reactions with secondary amines than with primary amines of similar basicity, which fully accounts for their higher reactivity. The second-order rate constants for the S-O bond fission result in linear Yukawa-Tsuno plots while those for the C-O bond fission exhibit poor correlation with the electronic nature of the substituent X. The distance effect and the nature of reaction mechanism have been suggested to be responsible for the poor correlation for the C-O bond fission pathway.     

Immobilization of penicillin acylase in porous beads of polyacrylamide gel

A procedure is described for the immobilization of benzylpenicillin acylase from Escherichia coli within uniformly spherical, porous polyacrylamide gel beads. Aqueous solutions of the enzyme and sodium alginate and of acrylamide monomer, N,N'-methylene-bis-acrylamide, N,N,N,N'-tetramethylethylenediamine (TEMED) and sodium alginate are cooled separately, mixed, and dropped immediately into ice-cold, buffered calcium formate solution, pH 8.5, to give calcium alginate-coated beads. The beads are left for 30-60 min in the cold calcium formate solution for polyacrylamide gel formation. The beads are then treated with a solution of glutaraldehyde and the calcium alginate subsequently leached out with a solution of potassium phosphate. Modification of the native enzyme with glutaraldehyde results in a slight enhancement in the rate of hydrolysis of benzylpenicillin at pH 7.8 and 0.05M substrate concentration. The enzyme entrapped in porous polyacrylamide gel beads shows no measurable diffusional limitation in stirred reactors, catalyzing the hydrolysis of the substrate at a rate comparable to that of the glutaraldehyde-modified native enzyme. The immobilized enzyme preparation has been used in batch mode over 90 cycles without any apparent loss in hydrolytic activity.     

Application of tertiary amines for arsenic and selenium signal enhancement and polyatomic interference reduction in ICP-MS analysis of biological samples

Water soluble tertiary amines enhance signals and decrease polyatomic chloride interferences in the direct inductively coupled plasma – mass spectrometric (ICP-MS) determination of As and Se in biological samples. Preliminary experiments with amine concentrations and nebulizer flow rates produced element and interference signal intensity changes. Arsenic and Se ICP-MS determination parameters have been optimized by a simplex procedure with amines in an argon plasma or without amines but with addition of N₂ to the Ar. Variables include RF (radio frequency) power, nebulizer gas flow rate, intermediate gas flow rate, and amine concentration or nitrogen gas flow rate. Detection limit, minimization of polyatomic ion intensities, and reproducibility have been evaluated as reponse factors. The signal enhancement and element-to-molecular interference ratios differ to some extent with analyte intensity optimum operating conditions. The detection limits with addition of nitrogen (16 pg mL^–1 for As and 180 pg mL^–1 for Se) or of amines (8 pg mL^–1 for As and 120 pg mL^–1 for Se) and the extent of chloride interference minimization were compared. Amines addition was more beneficial. Biological standard reference materials and food and fecal samples were analyzed following different sample dissolution procedures.     

Application of tertiary amines for arsenic and selenium signal enhancement and polyatomic interference reduction in ICP-MS analysis of biological samples

Water soluble tertiary amines enhance signals and decrease polyatomic chloride interferences in the direct inductively coupled plasma – mass spectrometric (ICP-MS) determination of As and Se in biological samples. Preliminary experiments with amine concentrations and nebulizer flow rates produced element and interference signal intensity changes. Arsenic and Se ICP-MS determination parameters have been optimized by a simplex procedure with amines in an argon plasma or without amines but with addition of N₂ to the Ar. Variables include RF (radio frequency) power, nebulizer gas flow rate, intermediate gas flow rate, and amine concentration or nitrogen gas flow rate. Detection limit, minimization of polyatomic ion intensities, and reproducibility have been evaluated as reponse factors. The signal enhancement and element-to-molecular interference ratios differ to some extent with analyte intensity optimum operating conditions. The detection limits with addition of nitrogen (16 pg mL^–1 for As and 180 pg mL^–1 for Se) or of amines (8 pg mL^–1 for As and 120 pg mL^–1 for Se) and the extent of chloride interference minimization were compared. Amines addition was more beneficial. Biological standard reference materials and food and fecal samples were analyzed following different sample dissolution procedures.     

Reactivity of the 4-amino-5H-1,2-oxathiole-2,2-dioxide heterocyclic system: a combined experimental and theoretical study

The reactivity of the 4-amino-5H-1,2-oxathiole-2,2-dioxide (or beta-amino-gamma-sultone) heterocyclic system has scarcely been studied. Here we describe the reactivity of this system towards electrophiles and amines on readily available model substrates differently substituted at the C-5 position. A variety of C-electrophiles, carbonyl electrophiles (such as acyl chlorides, isocyanates, or aldehydes) and halogen or nitrogen electrophiles have been explored. Both the C-3 and 4-amino positions of the beta-amino-gamma-sultone system are able to undergo electrophilic reactions, and the reaction products depend on the electrophile used and on the reaction conditions. On the other hand, nucleophilic attack of amines occurs at the C-4 position of the beta-amino-gamma-sultone system only in spiranic substrates bearing alicyclic substituents at the C-5 position. A comparative computational study between spiranic and non-spiranic substrates suggests that conformational changes, undergone on intermediate compounds, account for the observed reactivity differences. Moreover, these conformational changes seem to bring about an increase of electron density on the N-4 and C-3 atoms of the enaminic system, and a possible enhancement in the reactivity of spiranic substrates towards electrophiles in the presence of amines. Experimental data consistent with this predicted enhanced reactivity is also presented.     

PHOTOCHEMICAL REACTIONS OF AZIDOCOUMARINS

Abstract— Photochemical reactions of 6-azidocoumarin and 7-azido-4-methylcoumarin in the presence of secondary amines have been investigated for their potential applications in photoaffinity labeling. It was found that the singlet nitrene generated from 6-azidocoumarin isomerized to a dehydroazepine intermediate that reacted with an amine to yield two isomeric adducts. Photolysis of 7-azido-4-meth-ylcoumarin, in contrast, gave a triplet nitrene that abstracted hydrogen atoms from secondary amine molecules to form 7-amino-4-methylcoumarin as the major product. The difference in the intersystem crossing rate between the two compounds originates from the azido position relative to the carbonyl group. Because of its ability to form a covalent linkage with a nucleophile, 6-azidocoumarin is deemed to have a greater potential as a photoaffinity label than 7-azido-4-methylcoumarin.     

Kinetics and Mechanism of Reaction between N-Polyfluorophenylcarbonimidoyl Dichlorides and Tertiary Amines in Acetonitrile

The reaction of N-polyfluorophenylcarbonimidoyl dichlorides with tertiary amines in acetonitrile afforded chloroamidines R²NC(Cl) = NAr_F and alkyl chloride. The precursor of the products is the corresponding quaternary ammonium salt [R³N+C(Cl) = NAr_F]-Cl^-. The rate of the salt formation is described by a second order equation; however with some amines a saturation effect was observed for the reaction rate with the growing amine concentration. This fact and also the influence of the amine and the substrate structure on the reaction rate suggests that reaction proceeds by addition-elimination mechanism with formation of a tetrahedral intermediate. The latter in the rate-limiting stage undergoes a stereomutation into an intermediate of a configuration favorable for conversion into a quaternary salt.     

Light-enhanced catalysis by pyridoxal phosphate-dependent aspartate aminotransferase

The mechanisms of pyridoxal 5'-phosphate (PLP)-dependent enzymes require substrates to form covalent "external aldimine" intermediates, which absorb light strongly between 410 and 430 nm. Aspartate aminotransferase (AAT) is a prototypical PLP-dependent enzyme that catalyzes the reversible interconversion of aspartate and α-ketoglutarate with oxalacetate and glutamate. From kinetic isotope effects studies, it is known that deprotonation of the aspartate external aldimine C(α)-H bond to give a carbanionic quinonoid intermediate is partially rate limiting in the thermal AAT reaction. We show that excitation of the 430-nm external aldimine absorption band increases the steady-state catalytic activity of AAT, which is attributed to the photoenhancement of C(α)-H deprotonation on the basis of studies with Schiff bases in solution. Blue light (250 mW) illumination gives an observed 2.3-fold rate enhancement for WT AAT activity, a 530-fold enhancement for the inactive K258A mutant, and a 58600-fold enhancement for the PLP-Asp Schiff base in water. These different levels of enhancement correlate with the intrinsic reactivities of the C(α)-H bond in the different environments, with the less reactive Schiff bases exhibiting greater enhancement. Time-resolved spectroscopy, ranging from femtoseconds to minutes, was used to investigate the nature of the photoactivation of C(α)-H bond cleavage in PLP-amino acid Schiff bases both in water and bound to AAT. Unlike the thermal pathway, the photoactivation pathway involves a triplet state with a C(α)-H pK(a) that is estimated to be between 11 and 19 units lower than the ground state for the PLP-Val Schiff base in water.