The suffix binary search tree and suffix AVL tree

Suffix trees and suffix arrays are classical data structures that are used to represent the set of suffixes of a given string, and thereby facilitate the efficient solution of various string processing problems—in particular on-line string searching. Here we investigate the potential of suitably adapted binary search trees as competitors in this context. The suffix binary search tree (SBST) and its balanced counterpart, the suffix AVL-tree, are conceptually simple, relatively easy to implement, and offer time and space efficiency to rival suffix trees and suffix arrays, with distinct advantages in some circumstances—for instance in cases where only a subset of the suffixes need be represented.

Construction of a suffix BST for an n-long string can be achieved in O(nh) time, where h is the height of the tree. In the case of a suffix AVL-tree this will be O(nlogn) in the worst case. Searching for an m-long substring requires O(m+l) time, where l is the length of the search path. In the suffix AVL-tree this is O(m+logn) in the worst case. The space requirements are linear in n, generally intermediate between those for a suffix tree and a suffix array.

Empirical evidence, illustrating the competitiveness of suffix BSTs, is presented.     

A tabu search heuristic for the generalized minimum spanning tree problem

This paper describes an attribute based tabu search heuristic for the generalized minimum spanning tree problem (GMSTP) known to be NP-hard. Given a graph whose vertex set is partitioned into clusters, the GMSTP consists of designing a minimum cost tree spanning all clusters. An attribute based tabu search heuristic employing new neighborhoods is proposed. An extended set of TSPLIB test instances for the GMSTP is generated and the heuristic is compared with recently proposed genetic algorithms. The proposed heuristic yields the best results for all instances. Moreover, an adaptation of the tabu search algorithm is proposed for a variation of the GMSTP in which each cluster must be spanned at least once.     

Ant colony optimization with a specialized pheromone trail for the car-sequencing problem

This paper studies the learning process in an ant colony optimization algorithm designed to solve the problem of ordering cars on an assembly line (car-sequencing problem). This problem has been shown to be NP-hard and evokes a great deal of interest among practitioners. Learning in an ant algorithm is achieved by using an artificial pheromone trail, which is a central element of this metaheuristic. Many versions of the algorithm are found in literature, the main distinction among them being the management of the pheromone trail. Nevertheless, few of them seek to perfect learning by modifying the internal structure of the trail. In this paper, a new pheromone trail structure is proposed that is specifically adapted to the type of constraints in the car-sequencing problem. The quality of the results obtained when solving three sets of benchmark problems is superior to that of the best solutions found in literature and shows the efficiency of the specialized trail.     

A tree search method for the container loading problem with shipment priority

This paper addresses a special kind of container loading problem with shipment priority. We present a tree search method, which is based on a greedy heuristic. In the greedy heuristic, blocks made up of identical items with the same orientation are selected for packing into a container. Five evaluation functions are proposed for block selection, and the different blocks selected by each evaluation function constitute the branches of the search tree. A method of space splitting and merging is also embedded in the algorithm to facilitate efficient use of the container space. In addition, the proposed algorithm covers an important constraint called shipment priority to solve practical problems. The validity of the proposed algorithm is examined by comparing the present results with those of published algorithms using the same data.     

Iterated tabu search for the car sequencing problem

This paper introduces an iterated tabu search heuristic for the daily car sequencing problem in which a set of cars must be sequenced so as to satisfy requirements from the paint shop and the assembly line. The iterated tabu search heuristic combines a classical tabu search with perturbation operators that help escape from local optima. The resulting heuristic is flexible, easy to implement, and fast. It has produced very good results on a set of test instances provided by the French car manufacturer Renault.     

Breakout local search for the Steiner tree problem with revenue,budget and hop constraints

The Steiner tree problem (STP) is one of the most popular combinatorial optimization problems with various practical applications. In this paper, we propose a Breakout Local Search (BLS) algorithm for an important generalization of the STP: the Steiner tree problem with revenue, budget and hop constraints (STPRBH), which consists of determining a subtree of a given undirected graph which maximizes the collected revenues, subject to both budget and hop constraints. Starting from a probabilistically constructed initial solution, BLS uses a Neighborhood Search (NS) procedure based on several specifically designed move operators for local optimization, and employs an adaptive diversification strategy to escape from local optima. The diversification mechanism is implemented by adaptive perturbations, guided by dedicated information of discovered high-quality solutions. Computational results based on 240 benchmarks show that BLS produces competitive results with respect to several previous approaches. For the 56 most challenging instances with unknown optimal results, BLS succeeds in improving 49 and matching one best known results within reasonable time. For the 184 instances which have been solved to optimality, BLS can also match 167 optimal results.     

Combining variable neighborhood search with integer linear programming for the generalized minimum spanning tree problem

We consider the generalized version of the classical Minimum Spanning Tree problem where the nodes of a graph are partitioned into clusters and exactly one node from each cluster must be connected. We present a Variable Neighborhood Search (VNS) approach which uses three different neighborhood types. Two of them work in complementary ways in order to maximize search effectivity. Both are large in the sense that they contain exponentially many candidate solutions, but efficient polynomial-time algorithms are used to identify best neighbors. For the third neighborhood type we apply Mixed Integer Programming to optimize local parts within candidate solution trees. Tests on Euclidean and random instances with up to 1280 nodes indicate especially on instances with many nodes per cluster significant advantages over previously published metaheuristic approaches. This work is supported by the RTN ADONET under grant 504438.     

Fast heuristics for the Steiner tree problem with revenues,budget and hop constraints

This article describes and compares three heuristics for a variant of the Steiner tree problem with revenues, which includes budget and hop constraints. First, a greedy method which obtains good approximations in short computational times is proposed. This initial solution is then improved by means of a destroy-and-repair method or a tabu search algorithm. Computational results compare the three methods in terms of accuracy and speed.     

A two-stage intelligent search algorithm for the two-dimensional strip packing problem

This paper presents a two-stage intelligent search algorithm for a two-dimensional strip packing problem without guillotine constraint. In the first stage, a heuristic algorithm is proposed, which is based on a simple scoring rule that selects one rectangle from all rectangles to be packed, for a given space. In the second stage, a local search and a simulated annealing algorithm are combined to improve solutions of the problem. In particular, a multi-start strategy is designed to enhance the search capability of the simulated annealing algorithm. Extensive computational experiments on a wide range of benchmark problems from zero-waste to non-zero-waste instances are implemented. Computational results obtained in less than 60 seconds of computation time show that the proposed algorithm outperforms the supposedly excellent algorithms reported recently, on average. It performs particularly better for large instances.     

A tabu search algorithm for solving economic lot scheduling problem

The economic lot scheduling problem has driven considerable amount of research. The problem is NP-hard and recent research is focused on finding heuristic solutions rather than searching for optimal solutions. This paper introduces a heuristic method using a tabu search algorithm to solve the economic lot scheduling problem. Diversification and intensification schemes are employed to improve the efficiency of the proposed Tabu search algorithm. Experimental design is conducted to determine the best operating parameters for the Tabu search. Results show that the tabu search algorithm proposed in this paper outperforms two well known benchmark algorithms.     

A hybrid tabu search/branch & bound approach to solving the generalized assignment problem

A new approach for solving the generalized assignment problem (GAP) is proposed that combines the exact branch & bound approach with the heuristic strategy of tabu search (TS) to produce a hybrid algorithm for solving GAP. The algorithm described uses commercial software to solve sub-problems generated by the TS guiding strategy. The TS approach makes use of the concept of referent domain optimisation and introduces novel add/drop strategies. In addition, the linear programming relaxation of GAP that forms part of the branch & bound approach is itself helpful in suggesting which variables might take binary values. Computational results on benchmark test instances are presented and compared with results obtained by the standard branch & bound approach and also several other heuristic approaches from the literature. The results show the new algorithm performs competitively against the alternatives and is able to find some new best solutions for several benchmark instances.     

Random suffix search trees

A random suffix search tree is a binary search tree constructed for the suffixes X_i = 0 · B_iB_i+1B_i+2… of a sequence B₁, B₂, B₃, … of independent identically distributed random b‐ary digits B_j. Let D_n denote the depth of the node for X_n in this tree when B₁ is uniform on ?_b. We show that for any value of b > 1, ??D_n = 2 log n + O(log²log n), just as for the random binary search tree. We also show that D_n/??D_n → 1 in probability. © 2003 Wiley Periodicals, Inc. Random Struct. Alg., 2003     

A large neighborhood search heuristic for the longest common subsequence problem

Given a set S={S ¹,…,S ^k } of finite strings, the k-Longest Common Subsequence Problem (k-LCSP) seeks a string L ^* of maximum length such that L ^* is a subsequence of each S ⁱ for i=1,…,k. This paper presents a large neighborhood search technique that provides quality solutions to large k-LCSP instances. This heuristic runs in linear time in both the length of the sequences and the number of sequences. Some computational results are provided.     

An integrated tabu search algorithm for the lot streaming problem in job shops

In this paper, we focus on solving the lot streaming problem in a job shop environment, where consistent sublots are considered. The presented three-phase algorithm incorporates the predetermination of sublot sizes, the determination of schedules based on tabu search and the variation of sublot sizes. With regard to tabu search implementation, a constructive multi-level neighbourhood is developed, which effectively connects three isolated neighbourhood functions. Moreover, enhancements of the basic version of tabu search are conducted. Combined with the procedure for varying sublot sizes, the algorithm further exploits the improvement potential. All tested instances show a rapid convergence to their lower bounds. The well-known difficult benchmark problems also achieve substantial makespan reduction. In addition, the performance of specific components is intensively examined in our study.     

Parallel lightweight wavelet tree,suffix array and FM-index construction

We present parallel lightweight algorithms to construct wavelet trees, rank and select structures, and suffix arrays in a shared-memory setting. The work and depth of our first parallel wavelet tree algorithm match those of the best existing parallel algorithm while requiring asymptotically less memory and our second algorithm achieves the same asymptotic bounds for small alphabet sizes. Our experiments show that they are both faster and more memory-efficient than existing parallel algorithms. We also present an experimental evaluation of the parallel construction of rank and select structures, which are used in wavelet trees. Next, we design the first parallel suffix array algorithm based on induced copying. Our induced copying requires linear work and polylogarithmic depth for constant alphabets sizes. When combined with a parallel prefix doubling algorithm, it is more efficient in practice both in terms of running time and memory usage compared to existing parallel implementations. As an application, we combine our algorithms to build the FM-index in parallel.     

A cooperative parallel tabu search algorithm for the quadratic assignment problem

In this study, we introduce a cooperative parallel tabu search algorithm (CPTS) for the quadratic assignment problem (QAP). The QAP is an NP-hard combinatorial optimization problem that is widely acknowledged to be computationally demanding. These characteristics make the QAP an ideal candidate for parallel solution techniques. CPTS is a cooperative parallel algorithm in which the processors exchange information throughout the run of the algorithm as opposed to independent concurrent search strategies that aggregate data only at the end of execution. CPTS accomplishes this cooperation by maintaining a global reference set which uses the information exchange to promote both intensification and strategic diversification in a parallel environment. This study demonstrates the benefits that may be obtained from parallel computing in terms of solution quality, computational time and algorithmic flexibility. A set of 41 test problems obtained from QAPLIB were used to analyze the quality of the CPTS algorithm. Additionally, we report results for 60 difficult new test instances. The CPTS algorithm is shown to provide good solution quality for all problems in acceptable computational times. Out of the 41 test instances obtained from QAPLIB, CPTS is shown to meet or exceed the average solution quality of many of the best sequential and parallel approaches from the literature on all but six problems, whereas no other leading method exhibits a performance that is superior to this.     

Tabu search and GRASP for the maximum diversity problem

In this paper, we develop new heuristic procedures for the maximum diversity problem (MDP). This NP-hard problem has a significant number of practical applications such as environmental balance, telecommunication services or genetic engineering. The proposed algorithm is based on the tabu search methodology and incorporates memory structures for both construction and improvement. Although proposed in seminal tabu search papers, memory-based constructions have often been implemented in naïve ways that disregard important elements of the fundamental tabu search proposals. We will compare our tabu search construction with a memory-less design and with previous algorithms recently developed for this problem. The constructive method can be coupled with a local search procedure or a short-term tabu search for improved outcomes. Extensive computational experiments with medium and large instances show that the proposed procedure outperforms the best heuristics reported in the literature within short computational times.     

A bicriteria solid transportation problem with fixed charge under stochastic environment

In this paper, a bicriteria solid transportation problem with stochastic parameters is investigated. Three mathematical models are constructed for the problem, including expected value goal programming model, chance-constrained goal programming model and dependent-chance goal programming model. A hybrid algorithm is also designed based on the random simulation algorithm and tabu search algorithm to solve the models. At last, some numerical experiments are presented to show the performance of models and algorithm.     

Scatter search for the single source capacitated facility location problem

This paper considers the Single Source Capacitated Facility Location Problem (SSCFLP). We propose a Scatter Search approach to provide upper bounds for the optimal solution of the problem. The proposed approach uses GRASP to initialize the Reference Set. Solutions of the Reference Set are combined using a procedure that consists of two phases: (1) the initialization phase and (2) the improvement phase. During the initialization phase each client is assigned to an open facility to obtain a solution that is then improved with the improvement phase. Also, a tabu search algorithm is applied. In order to evaluate the proposed approach we use different sets of test problems. According to the results obtained we observe that the method provides good quality solutions with reasonable computational effort.     

Local search for the minimum label spanning tree problem with bounded color classes

In the Minimum Label Spanning Tree problem, the input consists of an edge-colored undirected graph, and the goal is to find a spanning tree with the minimum number of different colors. We investigate the special case where every color appears at most r times in the input graph. This special case is polynomially solvable for r=2, and NP- and APX-complete for any fixed r?3.We analyze local search algorithms that are allowed to switch up to k of the colors used in a feasible solution. We show that for k=2 any local optimum yields an (r+1)/2-approximation of the global optimum, and that this bound is tight. For every k?3, there exist instances for which some local optima are a factor of r/2 away from the global optimum.