Separation of purine bases, nucleosides and nucleotides by a column-switching technique combining reversed-phase and anion-exchange high-performance liquid chromatography

An on-line two-stage column chromatographic technique is described which combines reversed-phase and anion-exchange chromatography for the separation of purine nucleic acid components. The elution program applied, consisting of two gradient programmes, provides a separation of bases and nucleosides on the octadecyl silica column and a separation of the nucleotides on the anion-exchange column to which they have been switched at the beginning of the elution. This method is easy to modify for special problems and can be used when establishing a complete profile of purines.     

Separation of nucleotides by reversed-phase high-performance liquid chromatography: Advantages and limitations

Summary The determination of nucleotides by reversedphase high-performance liquid chromatography with 0.1 M (NH₄)₃PO₄ as an elution buffer is described. Effects of pH, type of RP packing and column efficiency are discussed. Currently used columns with efficiencies corresponding to 7,000–15,000 theoretical plates, containing 15–20% of bound carbon, have been shown not to be sufficient for the separation of nucleotides from tissue samples in the ionsuppression mode, but they provide excellent separation of 2-, 3-, and 5-monophosphates, deoxytriphosphates or synthetic derivatives of adenosine and guanosine.

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Trennung von Nucleotiden mit der RP-Hochleistungsflüssigkeits-Chromatographie: Vorteile und Beschränkungen

Zusammenfassung Die Bestimmung von Nucleotiden mit reversed-phase HPLC mit 0,1 M (NH₄)₃PO₄ als Elutionspuffer wird beschrieben. Der Einfluß des pH sowie der Art der RP-Belegung wird diskutiert, Säulen mit einer theroretischen Bodenzahl von 7000–15000, die 15–20% gebundenen Kohlenstoff enthalten, erwiesen sich als nicht geeignet für die Trennung von Nucleotiden aus Gewebeproben mittels Ionen-Verdrängung. Sie ergeben aber eine ausgezeichnete Trennung von 2-, 3- und 5-Monophosphaten, Desoxytriphosphaten oder synthetischen Derivaten von Adenosin und Guanosin.

     

Determination of nucleotides, nucleosides and nucleobases in cells of different complexity by reversed-phase and ion-pair high-performance liquid chromatography

Procedures are presented for the analysis of profiles of purine and pyridine compounds in human and rabbit red blood cells by reversed-phase high-performance liquid chromatography and in Ehrlich ascites tumour cells of mouse by ion-pair high-performance liquid chromatography. These compounds are present in rabbit erythrocytes in higher concentrations than in human blood cells, and in rabbit reticulocytes the concentration of purine compounds is still higher. During glucose-free incubation, human red cells accumulate adenosine and adenine in the presence of coformycin owing to the inhibition of adenosine and AMP deamination. Ehrlich ascites tumour cells lose major portions of purine mono-, di- and triphosphates between the seventh and eleventh day after inoculation into mouse peritoneal cavities.     

Separation of major RNA-derived nucleotides by reversed-phase liquid chromatography

The effects of pH, ionic strength and amount of methanol in the eluent on the retention of 5'-, 3'- and 2'-ribonucleoside monophosphates on a reversed-phase high-performance liquid chromatographic system are described. The data were used to develop suitable separation protocols for synthetic nucleotide mixtures and applied to the separation of RNA nucleotides derived by alkaline hydrolysis.     

Simultaneous determination of myocardial nucleotides, nucleosides, purine bases and creatine phosphate by ion-pair high-performance liquid chromatography.

An ion-pair reversed-phase high-performance liquid chromatographic method is described for the separation and quantification of myocardial nucleotides, nucleosides, their metabolites and creatine phosphate-related compounds in a single run. Separation of a standard mixture containing 21 compounds was achieved on a 5-microns Hypersil ODS column with a 5-min isocratic elution (buffer: 0.1 M NaH2PO4, pH 5.5, containing 5.9 mM tetrabutylammonium hydrogen-sulphate) followed by a slow linear gradient to 17% acetonitrile. The method was applied to extracts of freeze-clamped rat heart tissue samples as well as to extracts of neonatal rat heart cardiomyocytes, and it provided good resolution of high-energy phosphates, including creatine phosphate, as well as of their degradation products.     

Separation of cytochromes c by reversed-phase high-performance liquid chromatography

Six kinds of cytochrome c of different origin, i.e., bovine, chicken, dog, horse, rabbit and tuna, were subjected to separation by reversed-phase high-performance liquid chromatography on three commercial packing materials; octadecyl-, octyl- and cyanoalkyl-silicas. The effects of reversed-phase material, mobile phase and temperature on the separation of cytochromes c were examined. The parameters of the mobile phase were the organic modifier, the pH, the salt concentration and additives. Under optimal conditions, five of the six cytochromes c were resolved in 10 min. The relative retention values cannot be explained in terms of the relative lipophilicities of the side-chains of the amino acid residues.     

Separation of pyrimidine derivatives by reversed-phase high-performance liquid chromatography

Chromatographic behavior and separation conditions of pyrimidine derivatives were studied by high-performance liquid chromatography using a reversed-phase column and a multiwave UV detector.     

Separation of polypeptide antibiotics by reversed-phase high-performance liquid chromatography

Summary The influence of different reversed-phase packings and the addition of acidic modifiers to the mobile phase was observed on the separation of basic and neutral polypeptide antibiotics by gradient elution. A dependence of pore size, coverage, reaction type and endcapping of the packings was not observed. Nevertheless, not all reversed-phase packings were suitable for the separation of polypeptides, especially of basic molecules. The addition of phosphoric or perchloric acid to the mobile phase prevented adsorption of the basic polypeptide antibiotics on the stationary phase.     

Separation of tubulin subunits by reversed-phase high-performance liquid chromatography

When properly solubilized with trifluoroacetic acid (TFA), alpha- and beta-tubulin subunits from a variety of sources may be resolved at high yield by reversed-phase high-performance liquid chromatography (HPLC), using a Waters muBondapak C18 column and simple linear aqueous acetonitrile gradients containing TFA. The tubulin subunits are typically the most non-polar proteins present, with the beta-tubulin subunit eluting before the alpha. Column temperature above ambient improve both the resolution and the yield; less polar solvent systems do not. Tubulins not freely soluble in aqueous TFA may be solubilized in 6 M guanidine-hydrochloric acid with no change in retention time. Other columns with shorter carbon chain lengths and larger pore size produce a single, unresolved tubulin peak. Reversed-phase HPLC analysis provides an independent comparative evaluation of organelle-specific tubulins, with characteristic retention time differences observed between homologous ciliary and flagellar outer doublet tubulin subunits and also between them and their cytoplasmic counterparts.     

Measurement of urinary pyrimidine bases and nucleosides by high-performance liquid chromatography

A rapid procedure for the isolation, separation, identification and measurement of urinary pyrimidine bases and nucleosides by high-performance liquid chromatography (HPLC) is presented. The initial isolation of these compounds from urine was accomplished with small disposable ion-exchange columns. HPLC was performed on a silica gel column with a mobile phase composed of methylene chloride, methanol and 1 M aqueous ammonium formate buffer. Peaks were recorded at both 254 nm and 280 nm and the response ratio was used in combination with the elution volume for compound identification. The minimum detectable amount (signal-to-noise ratio = 2) ranged from 0.2 ng for uracil to 2.2 ng for cytidine. Linearity and recovery for thymine, uracil, uridine, pseudouridine, orotic acid and orotidine added to urine was demonstrated over almost a 10(3) concentration range. The potential application of this method for the study of inborn errors in the urea cycle is discussed.     

Rapid separation of DNA constituents, bases, nucleosides and nucleotides, under the same chromatographic conditions using high-performance liquid chromatography with a reversed-phase column

Four components of three sets of DNA constituents, bases, deoxyribonucleosides and deoxyribonucleoside 5'-monophosphate, were sufficiently resolved under one set of chromatographic conditions using high-performance liquid chromatography with a reversed-phase column (Zorbax ODS) and the solvent 0.4 M NH4H2PO4 (pH 3.5). The effect of pH and salt concentration in the solvent on the retention of these compounds in the column was thoroughly investigated. Proportionality of peak height to the content, and reproducibility and recovery of the four bases were satisfactory under appropriate conditions and as little as 1 microgram of DNA could be analysed for its base composition by this method.     

Separation of pantothenic acid derivatives by reversed-phase high-performance liquid chromatography

A variant of the use of reversed-phase high-performance liquid chromatography is described which permits the separation of pantothenic acid derivatives. The stationary phase used was a μBondapak-C₁₈ (4.1 × 250 mm column; 4.6 × 50 nm precolumn). Elution was performed in the isocratic regime using as mobile phase 20 M potassium phosphate buffer (pH 5.0)-methanol (91.5:8.5). The rate of elution was 1 ml/min. Retention times in the column for phosphopantothenate, pantothenate, phosphopantetheine, CoA, and dephosphoCoA were about 3.5, 6, 10.5, 16, and 42 min, respectively. This method, with radioactive detection, can be used for the analysis of pantothenic acid derivatives in liver extracts. One hour after white rats had been injected with [¹⁴C]pantothenic acid, the abovementioned components (with the exception of dephosphoCoA) contained the label in a ratio of 4:18:54:24. Institute of Biochemistry, Academy of Sciences of the Belorussian SSR, Grodno. Translated from Khimiya Prirodynkh Soedinenii, No. 6, pp. 855–858, November–December, 1988.     

Separation of retinyl esters by non-aqueous reversed-phase high-performance liquid chromatography

Rapid separation and sensitive quantitation of vitamin A esters can be achieved by use of an acetonitrile-dichloromethane (80:20) mobile phase with a 5-microns C18 column (15 cm X 4.6 mm) and absorbance detection at 325 nm. Either a Waters Resolve or a Rainin Microsorb column was used satisfactorily. Retinyl palmitate is eluted at about 7 min (capacity factor, k' = 5.5) at a flow-rate of 1.5 ml/min; retinyl palmitate and retinyl oleate, which are usually difficult to separate, are well resolved (resolution 1.2). Sensitivity (at a signal-to-noise ratio of 10:1) is 8 pmol retinyl palmitate (equivalent to 2.5 ng retinol). Quantitation of total retinyl esters is identical to that determined by a gradient high-performance liquid chromatographic technique over the range 30-1000 ng retinyl esters. Retinyl ester peaks in rat liver extracts were identified by their characteristic light absorption spectra, susceptibility to saponification, and by co-chromatography with authentic standards. Nine vitamin A ester peaks were identified and quantitated in rat liver extracts. A 10-microns Whatman Partisil 10/25 ODS-2 column was used with the same mobile phase to obtain partial resolution of retinyl esters (resolution 1.05 between retinyl oleate and retinyl palmitate; k' = 11.0 for retinyl palmitate) and improved retention for retinol (k' = 2.5, compared with k' = 0.6 for retinol on the 5-microns column).     

Separation of pantothenic acid derivatives by reversed-phase high-performance liquid chromatography

A variant of the use of reversed-phase high-performance liquid chromatography is described which permits the separation of pantothenic acid derivatives. The stationary phase used was a Bondapak-C₁₈ (4.1 × 250 mm column; 4.6 × 50 nm precolumn). Elution was performed in the isocratic regime using as mobile phase 20 M potassium phosphate buffer (pH 5.0)-methanol (91.5:8.5). The rate of elution was 1 ml/min. Retention times in the column for phosphopantothenate, pantothenate, phosphopantetheine, CoA, and dephosphoCoA were about 3.5, 6, 10.5, 16, and 42 min, respectively. This method, with radioactive detection, can be used for the analysis of pantothenic acid derivatives in liver extracts. One hour after white rats had been injected with [¹⁴C]pantothenic acid, the abovementioned components (with the exception of dephosphoCoA) contained the label in a ratio of 4:18:54:24.Institute of Biochemistry, Academy of Sciences of the Belorussian SSR, Grodno. Translated from Khimiya Prirodynkh Soedinenii, No. 6, pp. 855–858, November–December, 1988.     

Separation of polyamines, conjugated to DNA, by reversed-phase high-performance liquid chromatography

Genomic DNA was isolated from the lichen Evernia prunastri in order to analyze by high-performance liquid chromatography the occurrence of polyamines conjugated to the macromolecule. The acid-insoluble (PH) fraction of this DNA contained mainly conjugated spermidine, although small amounts of free putrescine and spermidine were also present. The PH fraction of DNA also contained conjugated evernic acid, the main phenol produced by this lichen species. Conjugation of polyamines to calf thymus DNA was carried out under in vitro conditions. Conjugation was to spermidine and mainly to spermine and produced DNA compactation. Evernic acid enhanced the action of polyamines in order to produce DNA aggregation.