A three-state model for the photophysics of guanine

The nonadiabatic photochemistry of the guanine molecule (2-amino-6-oxopurine) and some of its tautomers has been studied by means of the high-level theoretical ab initio quantum chemistry methods CASSCF and CASPT2. Accurate computations, based by the first time on minimum energy reaction paths, states minima, transition states, reaction barriers, and conical intersections on the potential energy hypersurfaces of the molecules lead to interpret the photochemistry of guanine and derivatives within a three-state model. As in the other purine DNA nucleobase, adenine, the ultrafast subpicosecond fluorescence decay measured in guanine is attributed to the barrierless character of the path leading from the initially populated 1(pi pi* L(a)) spectroscopic state of the molecule toward the low-lying methanamine-like conical intersection (gs/pi pi* L(a))CI. On the contrary, other tautomers are shown to have a reaction energy barrier along the main relaxation profile. A second, slower decay is attributed to a path involving switches toward two other states, 1(pi pi* L(b)) and, in particular, 1(n(O) pi*), ultimately leading to conical intersections with the ground state. A common framework for the ultrafast relaxation of the natural nucleobases is obtained in which the predominant role of a pi pi*-type state is confirmed.     

Ab initio study on the electronic structures of styrene in the Franck-Condon region

The electronic structures of styrene in the Franck‐Condon region have been theoretically examined by means of ab initio complete active space self‐consistent field (CASSCF) and the second order multireference Møller‐Plesset calculations. The optimized structure of styrene in S₀ is planar but the torsional motion of the phenyl group is very floppy. The S₁ state is assigned to the local π–π* excitation within the benzene ring. On the other hand, S₂, above S₁ by 0.561 eV, is assigned to a state that resembles the so‐called V‐state of ethylene. The transition intensity of S₀–S₁ is weak, while that of S₀–S₂ is strong. This is in good agreement with the experimental absorption spectrum where the S₀–S₁ and S₀–S₂ transitions are in the energy range of 290–220 nm. The optimized geometry of S₁, characterized by an enlarged benzene ring and its vibrational analyses, further justifies the assignment of the S₁ state. © 2002 Wiley Periodicals, Inc. J Comput Chem 9: 928–937, 2002     

A theoretical characterization of the photoisomerization channels of 1,2-cyclononadienes on both singlet and triplet potential-energy surfaces

The ground-, (1)(pipi*)-, and (3)(pipi*)-state potential-energy surfaces of 1,2-cyclononadiene and isomeric C(9)H(14) species, as well as 1-methyl-1,2-cyclononadiene and isomeric C(10)H(16) species were all mapped using CASSCF and the 6-31G(d) basis set. Theoretical results were found to be in good agreement with the available experimental observations for both 1,2-cyclononadiene and 1-methyl-1,2-cyclononadiene isomerization reactions under singlet and triplet direct or sensitized irradiation. Extremely efficient decay occurs from the first singlet excited state to the ground state through at least three different conical intersections (surface crossings). The first of these crossing points is accessed by a one-bond ring closure. From this conical intersection point (CI-A or CI-C), some possible subsequent ground-state reaction paths have been identified: 1) intramolecular C--H bond insertion to form the bicyclic photoproduct and 2) intramolecular C--H bond insertion to form tricyclic photoproducts. An excited state [1,3]-sigmatropic shift leads to the second conical intersection (CI-B or CI-E), which can give a three-bond cyclononyne species. Besides these, in the singlet photochemical reactions of 1-methyl-1,2-cyclononadiene, excited-state, one allenic C--H bond insertion leads to a third conical intersection (CI-D). Possible ground-state reaction pathways from this structure lead to the formation of a diene photoproduct or to transannular insertion photoproducts. Moreover, in the case of triplet 1,2-cyclononadiene and 1-methyl-1,2-cyclononadiene photoisomerization reactions, both chemical reactions will adopt a 1,3-biradical (T(1)/S(0)-1, T(1)/S(0)-2, and T(1)/S(0)-3), which may undergo intersystem crossings leading to the formation of tricyclic or bicyclic photoproducts. The results obtained allow a number of predictions to be made.     

Ab initio study on the photochemical behavior of styrene

Ab initio complete active space self‐consistent field (CASSCF) and the second order multireference Møller‐Plesset calculations have been performed to examine the photochemical behavior of styrene upon the strong S₀‐S₂ electronic excitation in the low‐lying excited states. The optimized structure at the S₂/S₁ conical intersection (CIX) is characterized by a quinoid structure. The transition state (TS) in S₁ is in the vicinity of the S₂/S₁‐CIX. At the S₁‐TS, two reaction paths branch. One is the relaxation into the stable structure in S₁ and then emission into S₀. The other is the radiationless decay through the S₁/S₀‐CIX. © 2002 Wiley Periodicals, Inc. J Comput Chem 10: 950–956, 2002     

Exploring the Potential of Fulvalene Dimetals as Platforms for Molecular Solar Thermal Energy Storage: Computations,Syntheses, Structures,Kinetics, and Catalysis

A study of the scope and limitations of varying the ligand framework around the dinuclear core of FvRu₂ in its function as a molecular solar thermal energy storage framework is presented. It includes DFT calculations probing the effect of substituents, other metals, and CO exchange for other ligands on ΔH_storage. Experimentally, the system is shown to be robust in as much as it tolerates a number of variations, except for the identity of the metal and certain substitution patterns. Failures include 1,1′,3,3′‐tetra‐tert‐butyl ( 4 ), 1,2,2′,3′‐tetraphenyl ( 9 ), diiron ( 28 ), diosmium ( 24 ), mixed iron‐ruthenium ( 27 ), dimolybdenum ( 29 ), and ditungsten ( 30 ) derivatives. An extensive screen of potential catalysts for the thermal reversal identified AgNO₃–SiO₂ as a good candidate, although catalyst decomposition remains a challenge.     

The Low‐Lying Excited States of 2,2′‐Bithiophene: A Theoretical Analysis

The low‐energy regions of the singlet→singlet, singlet→triplet, and triplet→triplet electronic spectra of 2,2′‐bithiophene are studied using multiconfigurational second‐order perturbation theory (CASPT2) and extended atomic natural orbitals (ANO) basis sets. The computed vertical, adiabatic, and emission transition energies are in agreement with the available experimental data. The two lowest singlet excited states, 1¹B_u and 2¹B_u, are computed to be degenerate, a novel feature of the system to be borne in mind during the rationalization of its photophysics. As regards the observed high triplet quantum yield of the molecule, it is concluded that the triplet states 2³A_g and 2³B_u, separated about 0.4 eV from the two lowest singlet excited states, can be populated by intersystem crossing from nonplanar singlet states.     

A Terminal,Fluxional η4‐Benzene Complex with a Thermally Accessible Triplet State is the Primary Photoproduct in the Intercyclobutadiene Haptotropism of (CpCo)phenylenes

Low‐temperature irradiation of linear [3]‐ and [4]phenylene cyclopentadienylcobalt complexes generates labile, fluxional η⁴‐arene complexes, in which the metal resides on the terminal ring. Warming induces a haptotropic shift to the neighboring cyclobutadiene rings, followed by the previously reported intercyclobutadiene migration. NMR scrutiny of the primary photoproduct reveals a thermally accessible 16‐electron cobalt η²‐triplet species, which, according to DFT computations, is responsible for the rapid symmetrization of the molecules along their long axes. Calculations indicate that the entire haptotropic manifold along the phenylene frame is governed by dual‐state reactivity of alternating 18‐electron singlets and 16‐electron triplets.     

Spin-orbit ab initio investigation of the photolysis of bromoiodomethane.

The photodissociation of bromoiodomethane has been investigated by spin-orbit ab initio calculations. The experimentally observed A- and B-bands and the corresponding photoproducts were assigned by multistate second-order multiconfigurational perturbation theory in conjunction with spin-orbit interaction through complete active space state interaction potential energy curves, vertical excitation energies, and oscillator strengths of low-lying excited states. The present conclusions with respect to the dissociation process in the B-band are different compared with those of previous studies. The reaction between the iso-CH(2)Br-I and iso-CH(2)I-Br species has also been studied. Finally, a set of stable excited states was identified for both isomers. These species might be of importance in the recombination process that follows the photodissociation in a solvent.     

Potential energy surfaces of the microhydrated guanine...cytosine base pair and its methylated analogue.

A complete scan of the potential and free-energy surfaces of monohydrated and dihydrated guanine...cytosine and 9-methylguanine...1-methylcytosine base pairs was realized by the molecular dynamics/quenching technique using the force field of Cornell et al. implemented in the AMBER7 program. The most stable and populated structures localized were further fully reoptimized at the correlated ab initio level employing the resolution of identity M?ller-Plesset method with a large basis set. A systematic study of microhydration of these systems using a high-level correlated ab initio approach is presented for the first time. The different behavior of guanine...cytosine and adenine...thymine complexes is also discussed. These studies of nucleic acid base pairs are important for finding binding sites of water molecules around bases and for better understanding of the influence of the solvent on the stability of the structure of DNA.     

Spin-orbit ab initio investigation of the ultraviolet photolysis of diiodomethane.

The UV photodissociation (<5 eV) of diiodomethane (CH(2)I(2)) is investigated by spin-orbit ab initio calculations. The experimentally observed photodissociation channels in the gas and condensed phases are clearly assigned by multi-state second-order multiconfigurational perturbation theory in conjunction with spin-orbit interaction through complete active space-state interaction potential energy curves. The calculated results indicate that the fast dissociations of the first two singlet states of CH(2)I(2) and CH(2)I--I lead to geminate-radical products, CH(2)I (.)+I((2)P(3/2)) or CH(2)I (.)+ I*((2)P(1/2)). The recombination process from CH(2)I--I to CH(2)I(2) is explained by an isomerization process and a secondary photodissociation reaction of CH(2)I--I. Finally, the study reveals that spin-orbits effects are significant in the quantitative analysis of the electronic spectrum of the CH(2)I--I species.     

A Time‐Dependent Picture of the Ultrafast Deactivation of keto‐Cytosine Including Three‐State Conical Intersections

Using mixed quantum–classical dynamics, the lowest part of the UV absorption spectrum and the first deactivation steps of keto‐cytosine have been investigated. The spectrum shows several strong peaks, which mainly come from the S₁ and S₂ states, with minor contributions from the S₃. The semiclassical trajectories, launched from these three states, clearly indicate that at least four states are involved in the relaxation of keto‐cytosine to the ground state. Non‐adiabatic transfer between the ππ* and nπ* excited states and deactivation via three‐state conical intersections is observed in the very early stage of the dynamics. In less than 100 fs, a large amount of population is deactivated to the ground state via several mechanisms; some population remains trapped in the S₂ state. The latter two events can be connected to the fs and ps transients observed experimentally.     

Photodissociation of Hydrated Hydrogen Iodide Clusters

Using high‐level ab initio calculations and excited state ab initio molecular dynamics simulations, we show that hydrated iodic acids release hydrogen radicals and/or hydrogen molecules as well as iodine radicals upon excitation. Its photoreaction process involving charge transfer to the solvent takes place in four steps: 1) hydration of the acid, 2) charge transfer to water upon excitation of hydrated acid, 3) detachment of the neutral iodine atom, and 4) detachment of the hydrogen radical. The iodine detachment process from excited hydrated hydro–iodic acids is exothermic and the detachment of hydrogen radicals from hydrated hydronium radicals is spontaneous if the initial kinetic energy of the cluster is high enough to get over the activation barrier of the detachment. The complete release of the radicals can be understood in terms of kinetics. This study shows how the hydrogen and halogen radicals are dissociated and released from their hydrated acids. Simple experiments corroborate our predicted mechanism for the release of hydrogen molecules from iodic acid in water by ultraviolet light.     

Reactions of Sulphate Radicals with Substituted Pyridines: A Structure–Reactivity Correlation Analysis

The kinetics of the oxidation of pyridine, 3‐chloropyridine, 3‐cyanopyridine, 3‐methoxypyridine and 3‐methylpyridine mediated by SO₄ ^{< M ‐>} radicals are studied by flash photolysis of peroxodisulphate, S₂O₈^2?, at pH 2.5 and 9. The absolute rate constants for the reactions of both, the basic and acid forms of the pyridines, are determined and discussed in terms of the Hammett correlation. The monosubstituted pyridines react about 10 times faster with sulphate radicals than their protonated forms, the pyridine ions. The organic intermediates are identified as the corresponding hydroxypyridine radical adducts and their absorption spectra compared with those estimated employing the time‐dependent density functional theory with explicit account for bulk solvent effects. A reaction mechanism which accounts for the observed intermediates and the pyridinols formed as products is proposed.     

Influence of Hydrogen Bonds and Nonspecific Interactions on the Spectral and Photophysical Properties of the Excited Singlet States of 4‐Aminophthalimide in Amine Solution

The hydrogen‐bond and nonspecific interaction energies for 4‐aminophthalimide (4‐AP), often used as a probe, in the ground electronic and excited singlet states are determined using ab initio computational methods. It is shown that the 4‐AP molecule can form three relatively strong hydrogen bonds with trimethylamine (TMA) and triethylamine (TEA), which leads to the formation of S₀‐complexes between the solute and solvent molecules. Only two of the hydrogen bonds with the amine group of 4‐AP change significantly their energies upon excitation and deactivation. The theoretical results are necessary to explain the spectral and unusual photophysical properties of 4‐AP in amine solutions.