Applications of pi-photon-induced transparency in two-frequency pulse electron paramagnetic resonance experiments

An approach to pulse electron paramagnetic resonance (EPR) experiments which are based on two different resonance fields is introduced. Instead of using two microwave (mw) sources or a magnetic field jump, bichromatic pulses consisting of a transverse microwave field with frequency omega(mw) and a longitudinal radio frequency field with frequency omega(rf) are employed. Such bichromatic pulses excite a number of multiple photon transitions at frequencies omega(mw)+komega(rf) (k in Z). The pi-photon-induced transparency phenomenon is used to select the required transitions. This approach is used in the stimulated soft electron spin echo envelope modulation and the four-pulse double electron-electron resonance experiments. The results obtained using the bichromatic pulse approach are in agreement with those obtained with the standard pulse EPR techniques. It is shown that applying bichromatic pulses is straightforward and advantageous in several respects.     

Electron paramagnetic resonance detection of intermediates in the enzymatic cycle of an extradiol dioxygenase

Extradiol catecholic dioxygenases catalyze the cleavage of the aromatic ring of the substrate with incorporation of both oxygen atoms from O2. These enzymes are important in nature for the recovery of large amounts of carbon from aromatic compounds. The catalytic site contains either Fe or Mn coordinated by a facial triad of two His and one Glu or Asp residues. Previous studies have shown that Fe(II) and Mn(II) can be interchanged in enzymes from different organisms to catalyze similar substrate reactions. In combination, quantitative electron paramagnetic resonance spectroscopy and rapid freeze-quench experiments allow us to follow the concentrations of four different Mn species, including key metal intermediates in the catalytic cycle, as the enzyme turns over its natural substrate. Two intermediates are observed: a Mn(III)-radical species which is either Mn-superoxide or Mn-substrate radical, and a unique Mn(II) species which is involved in the rate-limiting step of the cycle and may be Mn-alkylperoxo.     

Identification of intermediates in the catalytic cycle of chloroperoxidase

Background: Chloroperoxidase (CPO) is the most versatile of the hemethiolate proteins, catalyzing the chlorination of activated CH bonds and reactions reminiscent of peroxidase, catalase, and cytochrome P450. Despite 30 years of continuous efforts, no intermediates of the enzyme's catalytic cycle have been identified except for compound I. Thus, in the absence of conclusive evidence it is generally believed that the halogenation of substrates proceeds by means of ‘free HOCl’ in solution.Results: The pH profile of chloroperoxidase from Caldariomyces fumago revealed a new active-site complex that can be detected only at pH 4.4. According to ultra-violet (UV) spectroscopy, and by comparison with suitable enzyme models, this intermediate is the HOCl adduct of the iron(III) protoporphyrin(IX). Inactivation of chloroperoxidase by diethyl pyrocarbonate, which interrupts the proton shuttle by modification of the distal histidine, led to the formation of the ⁻OCl adduct of the iron complex, which was identified by comparison with a corresponding active site analogue.Conclusions: The availability of enzyme models of heme-thiolate proteins allowed the identification by UV spectroscopy of both the ⁻OCl adduct and the HOCI adduct of the iron(III) protoporphyrin(IX) of chloroperoxidase. The existence of these previously elusive intermediates suggests that the chlorination catalyzed by CPO, and its corresponding active site analogue, proceeds by Cl⁺ transfer from the HOCl adduct to the substrate bound in the distal pocket of the enzyme.     

Hyperfine artifacts in electron paramagnetic resonance imaging

Low-molecular weight nitroxide labels (nitroxides) are commonly used as probes in electron paramagnetic resonance (EPR) spectroscopy. The nitroxides exhibit multiple lines in their EPR spectrum due to hyperfine coupling of the unpaired electron with the nitrogen nucleus. In EPR imaging, these hyperfine lines cause either hyperfine-based limitations in the maximum obtainable image resolution or hyperfine-based artifacts in the reconstructed image. In this article we discuss the effect of hyperfine artifacts on the quality of the image and report the application of a numerical method based on forward-subtraction principles for removing hyperfine artifacts in the measured projections. We demonstrate using computer simulations and imaging phantoms that marked enhancement in image quality and resolution can be obtained by removing the hyperfine-imposed limit on the gradient magnitude and performing post-acquisition corrections for removing hyperfine artifacts in the image.     

Exchange narrowing in electron paramagnetic resonance of ruby

Previous theories of exchange narrowing of electron paramagnetic resonance spectra are re-examined. In the case of strong exchange interactions the diagonal matrix elements of the dipolar and fine structure interactions are time independent and symmetrization and narrowing of the electron resonance spectra result from a reordering of the magnetic energy levels by the strong exchange interaction. Lineshape calculations are given for concentrated ruby (10 mole % Cr₂O₃) and reasonable agreement with experiment is obtained.     

Uses of electron paramagnetic resonance in studying fracture

The uses of electron paramagnetic resonance (EPR) in studying aspects of polymer fracture are discussed. The sensitivity of EPR is such that all phases of fracture are not amenable to investigation by these means. This paper attempts to define those areas where the authors' experience would indicate that success might or might not be expected. A discussion of the difference between the tensile fracture of drawn polymer fibers, in which strong signals are obtained, and cast and molded materials is given.     

Filling factor in a pulsed electron paramagnetic resonance experiment

A definition and mathematical treatment to calculate the filling factor in a pulsed electron paramagnetic resonance (EPR) experiment are presented. The differences between filling factors in traditional, continuous wave (CW)-EPR experiments (eta), and in pulsed-EPR experiments (eta(p)), are discussed. We present some examples to demonstrate how eta(p) depends upon the particular pulse sequence and sample characteristics.     

Investigation of antioxidant radicals by the electron paramagnetic resonance method

Journal of Structural Chemistry -     

Comparative density-functional study of the electron paramagnetic resonance parameters of amavadin

Electronic g tensors and hyperfine coupling tensors have been calculated for amavadin, an unusual eight-coordinate vanadium(IV) complex isolated from Amanita muscaria mushrooms. Different density-functional methods have been compared, ranging from local via gradient-corrected to hybrid functionals with a variable Hartree-Fock exchange admixture. For both electron paramagnetic resonance (EPR) properties, hybrid functionals with an appreciable exact-exchange admixture provide the closest agreement with experimental data. Second-order spin-orbit corrections provide non-negligible contributions to the 51V hyperfine tensor. The orientation of g and A tensors relative to each other also depends on spin-orbit corrections to the A tensor. A rationalization for the close resemblance of the EPR parameters of amavadin to those of the structurally rather different vanadyl complexes is provided, based on the nature of the relevant frontier orbitals.     

Hyperfine structure of the electron paramagnetic resonance spectra of metal ketyls

Summary It was shown, by analyzing HFS in the EPR spectra of various metal ketyls, that the stabiliry of free radicals of the given type is determined by different factors. In aromatic metal ketyls the stabilizing factor is the considerable delocalization of the unpafred electron. In aliphatic metal ketyls the unpaired electron is mainly localized on the carbonyl carbon, and steric factors are more important than delocalization. In mixed ketyls of the type of trimethylacetophenone and benzoylferrocene K-ketyls, both factors act to a commensurable degree.Translated from Zhurnal Strukturnoi Khimii, Vol. 3, No. 5, pp. 536–540, September–October, 1962     

Decomposition study of the electron paramagnetic resonance spectrum of irradiated alanine

Recent Electron Paramagnetic Resonance (EPR) studies on alanine powders as a function of irradiation dose and temperature on the one hand and single crystal Electron Nuclear DOuble Resonance (ENDOR) studies on the other hand, showed the presence of at least three radicals contributing to the total alanine EPR spectrum. The latter spectrum obtained after irradiation at room temperature (RT), is dominated by the well-known stable-alanine-radical (SAR) CH3C*HCOO-, also denoted R1. Appropriate heating of irradiated alanine causes the relative contribution of R1 to decrease, resulting in a spectrum mainly caused by the H-abstraction radical CH3C*(NH3)COO-, denoted R2. Although the EPR spectrum of these two radicals could be satisfactorily simulated, their influence on dose reconstruction has not been reported yet. Therefore, a detailed Maximum Likelihood Common Factor Analysis (MLCFA) study has been performed on EPR spectra from polycrystalline alanine samples, after irradiation and heat treatments. Conclusions concerning the number of contributing radicals and their influence on the RT irradiated alanine EPR spectrum will be made.     

Structural transition in nickel-doped zinc fluotitanate observed by electron paramagnetic resonance

The EPR spectrum of Ni²⁺ in single crystals of zinc fluotitanate ZnTiF₆·6H₂O has been studied between 4.2 K and room temperature in the frequency range 14.0–16.5 GHz. A structural transition was observed at (180±2) K between a high-temperature trigonal structure and a low temperature orthorhombic structure. Spin hamiltonian parameters are reported above and below the transition.     

Mapping electron paramagnetic resonance spin label conformations by the simulated scaling method

In order to efficiently simulate spin label behavior when attached to the protein backbone we developed a novel approach that enhances local conformational sampling. The simulated scaling (SS) approach (Li, H., et al. J. Chem. Phys. 2007, 126, 24106) couples the random walk of a potential scaling parameter and molecular dynamics in the framework of hybrid Monte Carlo. This approach allows efficient barrier crossings between conformations. The method retains the thermodynamic detailed balance allowing for determination of relative free energies between various conformations. The accuracy of our method was validated by comparison with the recently resolved X-ray crystal structure of a spin labeled T4 lysozyme in which the spin label was in the interior of the protein. Consistent potentials of mean force (PMF) are obtained for the spin label torsion angles to illustrate their behavior in various protein environments: surface, semiburied, and buried. These PMFs reflect the experimentally observed trends and provide the rationale for the spin label dynamics. We have used this method to compare an implicit and explicit solvent model in spin label modeling. The implicit model, which is computationally faster, was found to be in excellent agreement with the explicit solvent treatment. Based on this collection of results, we believe that the presented approach has great potential in the general strategy of describing the behavior of the spin label using molecular modeling and using this information in the interpretation of EPR measurements in terms of protein conformation and dynamics.