(Imidazole)(3,3′-trimethylenedinitrilo bis (2-butanone oximate)) copper(II) perchlorate: Synthesis and crystal structure of a five-coordinate copper-protein model complex

The synthesis and crystal structure of the novel pentacoordinated complex [Cu(DOHPN)(IMI-DAZOLE)] (ClO4), (DOHPN=(3,3′-trimethylenedinitrilo bis 2-butanone oxime) are reported. The X-ray crystal structure (space groupP2₁/n, a=11.349(2) Å,b=14.241(3) Å,c= 12.635(3) Å; α=90°, β=100.21 (3)°, γ=90°) shows that the copper(II) ion occupies a distorted square-pyramidal geometry with the imidazole ligand occupying the axial position. The copper(II)-(N)imidazole distance is 2.125(3) Å and the copper(II)-tetraaza plane distance is 0.385/Å. The tetraaza ligand DOHPN adopts a “butterfly-like” geometry with a dihedral angle of 149.69°. The title complex is the first structurally characterized compound of the series [Cu(DOHPN)(axial ligand)]ⁿ⁺ where the axial ligand is a neutral N-heterocycle with known biological relevance. A comparison of the structural parameters with those observed when the axial ligand is H₂O or NCS^? (N-bonded) gives the following series with increasing metal-ligand interaction: H₂O>IMIDAZOLE>NCS^? (N-bonded).     

Synthesis and crystal structure of bis[N-(2-fluoro-3-methoxy)-salicylideneaminato]copper(II)

The title compound, bis[N-(2-fluoro-3-methoxy)-salicylideneaminato]copper(II) [Cu(C₁₄H₁₂O₂FN)₂] was synthesized and its crystal structure was determined. The title compound is triclinic, space group P with a = 8.552(1), b = 9.645(1), c = 7.871(1) Å, = 108.708(1), = 93.769(1), = 79.429(1), V = 1208.98(1) ų, Z = 2, D _c = 1.696 gcm_–3, (Mo K) = 1.815 mm^–1, R = 0.0369 for 2963 reflections [I>2(I)]. The title compound has crystallographic inversion symmetry with two bidentate Schiff base ligand coordinated to the Cu atom in a square-planar arrangement. The Cu–N1 and Cu–O2 distances are 1.995(1) and 1.885(1) Å, respectively.     

Crystal and molecular structure of bis(imazapyr)diaqua copper(II)

The imidazolinone herbicide imazapyr, 2-(4-isopropyl-4-methyl-5-oxo-2-imidazolin-2-yl)nicotinic acid (H₂imz) interacts with Cu(II) leading to [Cu(Himz)₂(H₂O)₂] which crystallizes in the space group Pbca, with a = 12.5370(3) Å, b = 19.8500(5) Å, c = 22.7720(9) Å, and Z = 8. The Cu(II) atom is octahedrally surrounded by four nitrogen atoms of two Himz^– anions and two water molecules. Each Himz^– acts as a chelating ligand by means of N pyridine and N lactam atoms leading to five-membered chelate rings. The Cu N distances vary from 1.948(4) to 2.299(5) Å while the Cu O are 2.114(5) and 2.256(6) Å. The imidazol N-H are involved in short intramolecular hydrogen bonds with the carboxylate groups. The structure is stabilized by an intermolecular hydrogen-bonded network involving the water molecules and the carboxylate groups.     

Synthesis,characterization and crystal structure of a novel 3‐D copper(II) polymer with bent N‐containing ligand

An exploration of the mixed‐ligand system under hydrothermal condition, has led to the isolation of a 3‐D novel framework {[Cu₂(mp)L₂)(H₂O)₂]·6H₂O}_n ( 1 ) (mp = benzene‐1,2,4,5‐ tetracarboxylate tetraanion, L = 4‐(5‐(pyridin‐4‐yl)‐1,3,4‐thiadiazol‐2yl)pyridine). Single‐crystal X‐ray analyses reveal that it crystallizes in the triclinic space group P‐1, a = 8.807(4) Å, b =11.139(6) Å, c = 11.291(5) Å, α=75.337(7), β = 73.584(5), γ= 66.795(5)°. The Cu^II ions are linked into an extended 2‐D grid net via mp molecules. Further these layers are united together through the bridging L to form a 3‐D structure, which exhibits a new 4‐connected topological network. (© 2008 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Crystal structure and spectroscopy of bis-[bis(2-benzimidazolyl)propane]copper(II) bis(triflate)monohydrate, a copper complex with a geometry intermediate between tetrahedral and square planar

The structure of a mononuclear copper(II) compound with the ligand bis(2-benzimidazolyl)propane (abbreviated as tbz) is reported. The compound [Cu(tbz)₂](CF₃SO₃)₂(H₂O) crystallizes in the triclinic space group P , with a = 12.363(6), b = 13.218(9), c = 15.365(8) Å, = 82.74(5), = 68.04(4), = 65.30(5), and Z = 2. The Cu(II) atom has a geometry intermediate between tetrahedral and square planar, consisting of four nitrogen atoms of two tbz ligands. The Cu—N—Cu angles are about 135°, while the dihedral angle between them amounts to 62° (0° for square planar and 90° for a tetrahedron). Ligand field bands are observed at 10.2 × 10³, 13.8 × 10³, and 20.3 × 10³ cm^–1, while the most characteristic infrared vibrations of the triflate anion are observed at 1273, 1260, 1238, 1221, 1171, and 1157 cm^–1.     

Synthesis and structure of a hexaazamacrocyclic copper(II) complex with maleato ligand

A hexaazamacrocyclic copper(II) complex Cu(L)(H₂O) (O₂CCH = CHCO₂)⋅H₂O (1) (L = 3,10-bis(2-hydroxyethyl)-1,3,5,8,10,12-hexaazacyclotetradecane) was prepared and structurally characterized by a combination of analytical, spectroscopic, and crystallographic methods. In complex 1, the coordination geometry about the copper(II) ion is six-coordinate with four equatorial nitrogen atoms from the macrocycle and two oxygen atoms from the axial maleato and aqua ligands. In 1, the one end of the maleato ligand coordinates to the central copper atom, while the other end is not bonded. The macrocycle and the axial ligands are highly involved in multiple types of hydrogen bonding interactions, resulting in the stabilization of the maleato ligand as a “coordinated ligand counter anion.”     

Crystal structure analysis of {bis‐2,6‐(3,5‐dimethylprazolyl) pyridine‐dicyanato}copper(II)monohydrate

A mononuclear copper(II) complex, [Cu(dmpp)(OCN)₂(H₂O)], was synthesized using 2,6‐bis (3,5‐dimethylpyrazolyl) pyridine (dmpp) and cyanate anion (OCN), and characterized by single crystal X‐ray diffraction. The coordination around the Cu atom is a distorted square‐pyramid involving three N atoms from the dmpp ligand and one N atom from OCN at the basal plane. The O atom of the OCN group is located at the apical position. The Cu atom is located 0.2782(1) Å above the basal plane. The Cu atom is coordinated by different donor atoms of the OCN groups. The complex crystalizes in monoclinic space group P2₁/n, with unit cell dimensions a= 12.4413(12), b=11.1457(13), c=14.2203(12) Å, β=108.817(3)°, V= 1866.5(3) ų. The cell containes 4 molecules. In the crystal, there are three intermolcular and three intramolecular hydrogen bonds interactions. The Cu atom and crystal water O interactions is 5.574 Å. © 2006 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim     

3-D polymeric structure formed by hydrogen bonds of copper (II) complex

A new copper complex trans-Dichlorobis[4-methoxypyridine]copper(II) (1) was synthesized and its crystal structure determined by X-ray diffraction. The close Cu···Cl contacts between the molecular units form bi-bridged dimers. The Copper(II) ion completes its 4 + 2 coordination via interaction with the Cu···Cl close contact. The complex has a polymeric structure of infinite one-dimensional (1D) bi-bridged chains, consisting of six-coordinate copper(II) units. C–H···C l intermolecular interaction connect the 1D-chains in the structure of 1 which form to 3D structure. The π ··· π interactions between the aromatic rings are also observed in the hydrogen bonded assembly of 1.     

Synthesis and crystal structure of a macrocyclic azidotetraamine copper(II) complex

The complex [Cu(L)N₃](H₂O)(ClO₄) (1) (L = 3,14-dimethyl-2,6,13,17-tetraazatricyclo[14,4,0^1.18, 0^7.12]docosane) has been prepared and characterized by X-ray crystallography. 1 crystallizes in the monoclinic space group P2₁/c, with a = 8.907(5), b = 20.036(3), c = 14.773(2) Å, = 103.78(2)°, V = 2560.6(15) ų, and Z = 4. The coordination geometry around the Cu(II) ion is a distorted square-pyramidal with four nitrogen atoms of the macrocycle and one nitrogen atom of the axial azido group.     

Synthesis and structural characterization of the dinuclear bis(glutarato)bis(urea)copper(II)complex, dihydrate

The complex [Cu(OOC-(CH₂)₃-COO)(O=C(NH₂)₂]₂·2H₂O has been synthesized and characterized by X-ray crystallography. It crystallizes in the triclinic system P-1 with a = 8.003(2) ?, b = 8.611(2) ?, c = 8.620(2) ?, α = 96.14(3)°, β = 116.66(2)°, γ = 105.66(4)° and V = 492.9(3) ?³. The structure consists of discrete centrosymmetric binuclear units and water molecules. The Cu(II) ions adopt a square-pyramidal coordination with four oxygen atoms of four bridging carboxylate and one carbonyl oxygen of the monodentate urea ligand. There is a very strong interaction between the two copper centers in binuclear entities (CuCu: 2.6266(15) ?).     

Synthesis and structure of a novel one-dimensional chain compound formed by copper(II) and nitronyl nitroxide radical

A novel compound formed by copper(II) and a carboxy-substituted nitronyl nitroxide of formula [Cu₂(NITpBAH)₂Cl₄] (NITpBAH = [2-(4-carboxy-phenyl)-4,4,5,5-tetramethyl-4,5-dihydro-1H-imidazol-1-oxyl-3-oxide]) has been synthesized. The compound crystallizes in the monoclinic space group P2₁/c with a = 9.5464(10), b = 12.4501(12), c = 14.3627(14) Å, = 95.200(2)°, and Z = 2. X-ray analysis reveals [Cu₂(NITpBAH)₂Cl₄] units to be linked into infinite chains by radical bridging ligands with N O of nitronyl nitroxide and substituted carboxy; there are the weak hydrogen bond interactions between chains.     

Synthesis and crystal structure of aquo-N-(2-hydroxyphenylmethenylimino)-1, 5-diamine-3-azapentanecopper(II), chloride

The title compound is [CuL(H₂O)]Cl, C₁₁H₁₈N₃ClO₂Cu, where L is N-(2-hydro- xyphenylmethenylimino)-1,5-diamine-3-azapentane. In the cation the metal atom is coordinated by three N and two O atoms from L and a water molecule in a distorted square-pyramidal geometry.     

Catenated molecular pattern in the crystal structure of a copper(II) complex with pyrazine-2,6-dicarboxylic acid and chloride ligands

The crystals of catena-dichloro-(dihydrogen pyrazine-2,6-dicarboxylato-O,O′,N,-N′) copper(II) dihydrate Cu[H₂(2,6-PZDC)]Cl₂?2H₂O are monclinic, space group C2/c with a = 11.658(2) Å, b = 6.778(1) Å, c = 16.390(3) Å, β = 98.90(3)^°, and Z = 4. Two adjacent copper(II) ions are bridged by a fully protonated pyrazine-2,6-dicarboxylic acid molecule which uses for bridging its O,O′,N-bonding moiety on one side and a single hetero-ring nitrogen atom on the other. Two chloride ions in axial position complete the octahedral coordination around the metal ions with bond distances: Cu–N 2.027(3) ÅA, Cu–N′ 2.005(3) ÅA, Cu–Cl. 2.281(1) ÅA, and Cu–O 2.446(2) ÅA. Copper(II) ions are located in the center of symmetry and are coplanar with the ligand acid molecule forming flat molecular chains propagating in the direction of the b axis. Hydrogen bonds via solvation water molecule link the chains into molecular layers parallel to the ac plane. Weak van der Waals type interactions operate between the layers.     

X-ray crystal structure of trans-bis(monoethanolamine) bis(saccharinato)nickel(II)

The crystal structure of trans-bis(monoethanolamine)bis(saccharinato)nickel(II), [Ni(C₇H₄NO₃S)₂(C₂H₇NO)₂], has been determined from X-ray diffraction data. The metal complex is monoclinic, with a = 11.0555(5), b = 8.9103(4), c = 11.3890(5) Å, = 105.0230(10)°, Z = 2, and space group P2_1/c . The structure consists of individual molecules. Two monoethanolamine molecules and two saccharinate anions coordinate the nickel atom forming a distorted octahedron. The monoethanolamine molecules act as a bidentate ligand and form five-membered trans chelate rings, which constitute the plane of the coordination octahedron, while two saccharinate ions behave as a monodentate ligand occupying the axial positions. Intermolecular hydrogen bonds link the molecules to form a three-dimensional infinite structure.     

Polymeric copper(II)-orotato complexes, [(C5H2N2O4)Cu(H2O)2]n

The compound [(C₅H₂N₂O₄)Cu(H₂O)₂]_n has been synthesized and its structure determined at room temperature. The primary coordination sphere at the Cu ion is square planar with the orotate dianion coordinating at the metal through heterocyclic nitrogen atom and adjacent oxygen of the carboxylate group, the remaining coordination sites are occupied by two water molecules. The orotate dianion is tricoordinated to one copper via N₁ and one oxygen of the carboxylato group and to another copper atom via the other oxygen of the carboxylato group. The coordination at copper is extended to five by the other oxygen of the carboxylate group of another orotate molecule. Thus, the molecules are associated to form chains, the carboxylato group acting as a bridge between the metal ions, the orotato-group being tridentate. The title compound crystallizes in the monoclinic space group. P2₁/n₁ with a = 9.515(5), b = 6.925(2), c = 11.861(6) Å, = 95.285(9)°, D _calc = 2.17 g cm^–3, and z = 4.     

Synthesis and crystal structure of copper(II) complex with 1,9-diamino-5-methyl-5-nitro-3,7-diazanonane

Condensation of bis(ethanediamine)copper(II) perchlorate with formaldehyde and nitroethane in basic methanol was found to generate (1,9-diamino-5-methyl-5-nitro-3,7-diazanonane)copper(II) perchlorate, [Cu(L₁)](ClO₄)₂. The copper(II) complex was characterized by elemental analysis and infrared and electronic spectra studies. The structure of [Cu(L₁)](ClO₄)₂ was determined by X-ray diffraction. The crystal structure revealed that the copper ion is in an elongated octahedral coordination with four nitrogens at the equational position and perchlorate anions at the axial positions and that one of the perchlorate anions bridges two copper ions, leading to a linear polymeric structure in the crystal.     

Molecular structure and spectral characteristics of bis(S-methyl-N-(2-pyridyl)methylendithiocarbazato)nickel(II), (Ni(NNS)2)

A nickel(II) complex of the pyridine-2-aldehyde Schiff base of S-methyldithiocarbazate (HNNS) has been synthesized and characterized by means of elemental analysis, IR and UV-vis spectra. The crystal structure of the complex has been determined by single-crystal X-ray diffraction. The complex crystallizes in the monoclinic, space P2₁/c, with a = 14.092(2), b = 16.886(2), c = 8.857(2)Å; = 105.78(3) °, V = 2028.2(6) ų, and Z = 4. The nickel atom is octahedrally coordinated by two uninegatively charged tridentate Schiff base in a mer-configuration via the pyridine nitrogen atom, azomethine nitrogen atom, and mecaptide sulfur atom.     

Synthesis and crystal structure of tetraiminediphenolate diiron(II) macrocyclic complex

The crystal structure of the binuclear tetraiminediphenolate diiron(II) macrocyclic complex [Fe₂(tidf)(CH₃OH)₄](ClO₄)₂ (tidf = tetraiminediphenolate ligand) is presented. The molecular structure (monoclinic, space group C2/c, Z = 4, a = 20.6903(14)Å, b = 11.0827(11) Å, c = 16.0494(15) Å, = 99.911(6) shows two iron(II) cores occupying distorted octahedral geometries with four methanol molecules bound axially. Main equatorial bond distances are 2.050(3) Å for Fe—O1 and 2.067(4) Å for Fe—N1 with a Fe Fe distance of 3.108(1) Å. Contrasting to the monoiron complex the macrocycle does not adopt a bent conformation being nearly coplanar with the maximum deviation from the least-squares plane of 0.18 Å.     

Synthesis and crystal structure of bis(4-methylpiperidine-dithiocarbamato-S,S′)-palladium(II)

The complex bis(4-methylpiperidine-dithiocarbamato-S,S′)-palladium(II) was synthesized by the reaction of 4-methyl-1-piperidine dithiocarbamic acid with palladium(II) chloride. Its structure was determined by X-ray crystal diffraction analysis. It crystallizes in the monoclinic P2₁/c space group with the crystal cell parameters a=8.6491(8) ?, b=18.7305(16) ?, c=11.9933(10) ?, β=107.074(1)°, V=1857.3(3) ?³ and Z=4. The palladium (II) ion is bonded to four sulfur atoms, belonging to two dithiocarbamate ligands, in a distorted square planar geometry. The X-ray data suggest a pronounced electronic delocalization in the two NCS₂ moieties.     

Coordination complexes of 2,6-diarylpyrazines with copper(II) acetate

The coordination chemistry of a series of 2,6- and 2,3-diarylpyrazines with copper(II) acetate is reported. The 2:2 coordination complexes formed between two 2,6-diarylpyrazines and copper(II) acetate are characterized by X-ray crystallography. The structure (2,6-bis(3,5-dimethylphenyl)pyrazine)copper(II) acetate acetonitrile solvate, (C₄₈H₅₂Cu₂N₄O₈) (C₂H₃N) is triclinic, P 1, with a = 7.9685(10), b = 13.1893(16), c = 13.8267(17) Å, = 107.585(3)°, = 103.921(3)° and = 96.759(3)°. The structure of (2-(2,6-dimethylphenyl)-6-(3,5-dimethylphenyl)pyrazine)copper(II) acetate, C₄₈H₅₂Cu₂N₄O₈, is monoclinic, P2₁/c, with a = 8.2196(7), b = 12.5174(11), c = 21.7325(19) Å and = 96.201(2)°.