Halogen-Bonding Heteroditopic [2]Catenanes for Recognition of Alkali Metal/Halide Ion Pairs

The first examples of halogen bonding (XB) heteroditopic homo[2]catenanes were prepared by discrete Na⁺ template-directed assembly of oligo(ethylene glycol) units derived from XB donor-containing macrocycles and acyclic bis-azide precursors, followed by a Cu^I-mediated azide-alkyne cycloaddition macrocyclisation reaction. Extensive ¹H NMR spectroscopic studies show the [2]catenane hosts exhibit positive cooperative ion-pair recognition behaviour, wherein XB-mediated halide recognition is enhanced by alkali metal cation pre-complexation. Notably, subtle changes in the catenanes’ oligo(ethylene glycol) chain length dramatically alters their ion-binding affinity, stoichiometry, complexation mode, and conformational dynamics. Solution-phase and single-crystal X-ray diffraction studies provide evidence for competing host-separated and direct-contact ion-pair binding modes. We further demonstrate the [2]catenanes are capable of extracting solid alkali-metal halide salts into organic media.     

An Interwoven Metal‐Organic Framework Combining Mechanically Interlocked Linkers and Interpenetrated Networks

New dibenzo[24]crown‐8 ether derivatives were prepared that contain appendages with thioether donors that can coordinate to a metal ion. These macrocycles were then combined with 1,2‐bis(pyridinium) ethane axles to create two types of [2]rotaxane ligands; those with the four thioether donors on the crown ether and those with six donor groups, four from the crown ether and two more attached to the stoppering groups of the dumbbell. The crown ethers and both types of [2]rotaxane ligands were allowed to react with Ag^I ions to form metal‐organic rotaxane framework (MORF) style coordination polymers. The interlocked hexadentate ligand forms the first example of a new type of lattice containing interwoven frameworks resulting from both interpenetration of frameworks due to the presence of an interlocked ligand and more classical interpenetration of independent frameworks.     

Sequential O- and N-acylation protocol for high-yield preparation and modification of rotaxanes: synthesis, functionalization, structure, and intercomponent interaction of rotaxanes

A pseudorotaxane consisting of a 24-membered crown ether and secondary ammonium salt with the hydroxy group at the terminus was quantitatively acylated by bulky acid anhydride in the presence of tributylphosphane as catalyst to afford the corresponding rotaxane in high yield. Large-scale synthesis without chromatographic separation was easily achieved. The ammonium group in the resulting rotaxane was quantitatively acylated with excess electrophile in the presence of excess trialkylamine. Various N-functionalized rotaxanes were prepared by this sequential double-acylation protocol. 1H NMR spectra and X-ray crystallographic analyses of the rotaxanes showed that the crown ether component was captured on the ammonium group in ammonium-type rotaxane by strong hydrogen-bonding intercomponent interaction. The conformation around the ammonium group was fixed by the hydrogen-bonding interaction. Meanwhile, the conformation of the amide-type rotaxane was determined by the weak CH/pi interaction between the methylene group in crown ether and the benzene ring of the axle component. The N-acylation of ammonium-type rotaxane is useful for the preparation of both functionalized rotaxanes and weak intercomponent interaction-based rotaxanes.     

Ultrafast dynamics of liquid poly(ethylene glycol)s and crown ethers studied by femtosecond Raman-induced Kerr effect spectroscopy

Ultrafast molecular dynamics of liquid poly(ethylene glycol)s, tetra(ethylene glycol), penta(ethylene glycol), and poly(ethylene glycol) with the molecular weight of 600, and crown ethers, 12-crown-4 and 15-crown-5, have been investigated by means of femtosecond optical heterodyne-detected Raman-induced Kerr effect spectroscopy. Picosecond Kerr transients of poly(ethylene glycol)s and crown ethers are characterized by a biexponential function with the time constants of about 2 and 20 ps. Both the faster and slower time constants do not vary much among the five oligo(ethylene oxide)s. Femtosecond dynamics is discussed based on the Kerr (depolarized Raman) spectra obtained by Fourier transform deconvolution analysis of the high time resolution Kerr transients. The broad low-frequency band (0-200 cm(-1)) in the Kerr spectrum is analyzed by two Brownian oscillators. The spectral shapes of linear poly(ethylene glycol) and cyclic crown ether are very different. Both the low- and high-frequency Brownian oscillators for crown ethers show lower frequency and broader spectral features than those for poly(ethylene glycol)s. The comparison of the low-frequency spectra of poly(ethylene glycol)s and crown ethers shows that the low-frequency spectrum of 15-crown-5 is closer to that of poly(ethylene glycol)s than that of 12-crown-4 is. The difference of the low-frequency spectra between poly(ethylene glycol) and crown ether is discussed with the concepts of molecular conformation and liquid density. The features of the observed intramolecular vibrational bands are also correlated with the molecular conformations.     

Quantitative conformational study of redox-active [2]rotaxanes, part 1: Methodology and application to a model [2]rotaxane

This paper reports a novel methodology for the conformational analysis of [2]rotaxanes. It combines NMR spectroscopic (COSY, NOESY and the recently reported paramagnetic line-broadening and suppression technique) and electrochemical techniques to enable a quantitative analysis of the co-conformations of interlocked molecules and the conformations of their components. This methodology was used to study a model [2]rotaxane in solution. This [2]rotaxane consists of an axle that incorporates an electron-poor, doubly positively charged viologen that threads an electron-rich crown ether. It has been shown that the axle of the [2]rotaxane in its dicationic state adopts a folded conformation in solution and the crown ether is localised at the viologen moiety. Following a one-electron reduction of viologen, the paramagnetic radical cation of the [2]rotaxane retains its folded conformation in solution. The data also demonstrate that in the radical cation the crown ether remains localised at the viologen, despite its reduced affinity for the singly reduced viologen. The combined quantitative NMR spectroscopic and electrochemical characterisation of the electromechanical function of the model [2]rotaxane in solution provides an important reference point for the study of switching in structurally related bistable [2]rotaxanes, which is the subject of the second part of this work.     

Thermoresponsive shuttling of rotaxane containing trichloroacetate ion

A thermoresponsive rotaxane shuttling system was developed with a trichloroacetate counteranion of an ammonium/crown ether-type rotaxane. Chemoselective thermal decomposition of the ammonium trichloroacetate moiety on the rotaxane yielded the corresponding nonionic rotaxane accompanied by a positional change of the crown ether on the axle. The rotaxane skeleton facilitated effective dissociation of the acid, markedly lowering the thermal decomposition temperature.     

Chemistry of crown ethers: Complexation with alkali metal trichloro(ethylene)platinum(II) salts

A novel method has been developed for the determination of the complexation constants of crown ethers with alkali salts. It comprises the equilibration of crown ether (1–7) solutions in deuterochloroform with solid trichloro(ethylene)platinum(II) salts (Na⁺, K⁺, Rb⁺, Cs⁺) and the PMR spectroscopic determination of the equilibrium ratio of complex to free crown ether from the relative intensities of the ethylene and crown ether protons. The solubility of uncomplexes salt was determined independently by atomic absorption spectrometry.The major advantages of this method over others are: (i) complexation constants in apolar solvents are obtained from a direct solid-liquid transition, (ii) the cation in the salt can be varied, and (iii) a simple detection technique can be used for monitoring the complexation.The PMR spectra indicate that there are three types of complex, depending on the ratio of the diameter of the crown ether cavity to that of the cation. If this ratio is small (<1), the aromatic ring is almost perpendicular to the flat polyether ring. With increasing ratio (～1.0) the flat polyether ring and the aromatic ring become almost coplanar in the complex. If the ratio is large (>1.0) the polyether ring is twisted around the cation.     

Synthesis and Complexing Properties of Novel Crown Ethers and Thiacrown Ethers Incorporating New Heterocyclic Moieties

The synthesis of some novel crown and thiacrown ethers via the reaction of 2,3-bis(4-hydroxyphenyl) or 2,3-bis(4-mercaptophenyl)quinoxalines and pyridopyridazine with diethylene and triethylene glycol ditosylate is described. The complexing ability of compounds 5b and 5h, as the representatives of both groups of compounds, with alkali and alkali earth metal cations were measured by the solvent extraction method. The results showed that crown ether 5b comparatively had more affinity towards the Mg²⁺ cation, while thiacrown ether 5h had greater affinity towards the Ca²⁺ cation.     

Five‐State Molecular Shuttling of a Pair of [2]Rotaxanes: Distinct Outputs in Response to Acid and Base Stimuli

In this study we synthesized two acid‐/base‐controllable [2]rotaxanes featuring aminodiazobenzene and aminocoumarin units, respectively, as chromophores and dibenzo[24]crown‐8 and dibenzo[25]crown‐8 units, respectively, as their macrocyclic components. Each [2]rotaxane contained N‐alkylarylamine (ammonium) and N,N‐dialkylamine (ammonium) centers as binding sites for their crown ether components. The absorption patterns of the chromophores were dependent on the position of the encircling macrocyclic component and the degree of protonation, with three distinct states (under acidic, neutral, and basic conditions) evident for each [2]rotaxane. The mixed [2]rotaxane system displayed stepwise and independent molecular shuttling behavior based on the degree of protonation of the amino groups in response to both the amount and strength of added acids or bases; as such, the system provided five different absorption signals as outputs that could be read using UV/Vis spectroscopy.     

Neutralization of a sec-ammonium group unusually stabilized by the "rotaxane effect": synthesis, structure, and dynamic nature of a "free" sec-amine/crown ether-type rotaxane

A fifteen-year riddle has been settled: neutralization, the most popular chemical event, of a crown ether/sec-ammonium salt-type rotaxane has been achieved and a completely nonionic crown ether/sec-amine-type rotaxane isolated. A [2]rotaxane was prepared as a typical substrate from a mixture of dibenzo[24]crown-8 ether (DB24C8) and sec-ammonium hexafluorophosphate (PF(6)) with a terminal hydroxy group through end-capping with 3,5-dimethylbenzoic anhydride in the presence of tributylphosphane as a catalyst in 90% yield. A couple of approaches to the neutralization of the ammonium rotaxane were investigated to isolate the free sec-amine-type rotaxane by decreasing the degree of thermodynamic and kinetic stabilities. One approach was the counteranion-exchange method in which the soft counterion PF(6)(-) was replaced with the fluoride anion by mixing with tetrabutylammonium fluoride, thus decreasing the cationic character of the ammonium moiety. Subsequent simple washing with a base allowed us to isolate the free sec-amine-type rotaxane in a quantitative yield. The other approach was a synthesis based on a protection/deprotection protocol. The acylation of the sec-ammonium moiety with 2,2,2-trichloroethyl chloroformate gave an N-carbamated rotaxane that could be deprotected by treating with zinc in acetic acid to afford the corresponding free sec-amine-type rotaxane in a quantitative yield. The structure of the free sec-amine-type rotaxane was fully confirmed by spectral and analytical data. The generality of the counteranion-exchange method was also confirmed through the neutralization of a bisammonium-type [3]rotaxane. The mechanism was studied from the proposed potential-energy diagram of the rotaxanes with special emphasis on the role of the PF(6)(-) counterion.     

Molecular Design of Crown Ethers. 22. Synthesis of Benzocrown Ether Derivatives and Their Solvent Extraction with Univalent／Bivalent Metal Picrates

Three novel benzocrown ether derivatives have been synthesized and their cation binding behavior with uniand bi-valent metal ions was evaluated by the solvent extraction of aqueous metal picrates. The obtained results indicate that the size-fit of crown ether and metal cation, and electron effect of the side arm attached to benzocrown ethers affect their cation binding ability and selectivity.     

A molecular shuttle for driving a multilevel fluorescence switch

A [2]rotaxane-based molecular shuttle comprised a macrocycle mechanically interlocked to a chemical "dumbbell" has been prepared in high yields by a thermodynamically controlled, template-induced clipping procedure. This molecular shuttle has two different recognition sites, namely, -NH2 +- and amide, separated by a phenyl unit. The macrocycle exhibits high selectivity for the -NH2+- recognition sites in the protonated form through noncovalent interactions, which include 1) N+-H...O hydrogen bonds; 2) C-H...O interactions between the CH2NH2+CH2 protons on the thread and the oligo(ethylene glycol) unit in the macrocycle; 3) pi...pi stacking interaction between macrocycle and aromatic unit. Upon deprotonation of the [2]rotaxane the macrocycle glides to the amide recognition site due to the hydrogen bonds between the -CONH- group and the oligo(ethylene glycol) unit in the macrocycle. The deprotonation process requires about 10 equivalents of base (iPr2NEt) in polar acetone, while the amount of base is only 1.2 equivalents in apolar tetrachloroethane. Upon addition of Li+, the conformation of the [2]rotaxane was altered as a result of the collective interactions of 1) hydrogen bonds between pyridine nitrogen and amide hydrogen atoms; 2) coordination between the oligo(ethylene glycol) unit, amide oxygen atom and Li+ cation. Then, when Zn2+ ions are added, the macrocycle returns to the deprotonated -NH- recognition site owing to coordination of the macrocycle and -NH- from the axle with the Zn2+ ion. All the above-mentioned movement processes are reversible through the alternate addition of TFA/iPr2NEt, Li/[12]-crown-4 and Zn2+/ethylenediaminetetraacetate (EDTA), by virtue of hydrogen bonding and metal-ion complexation. Significantly, the three independent movement processes are all accompanied by fluorescent responses: 1) complete repression in the protonated form; 2) low-level expression in the deprotonated form; 3) medium-level expression following addition of Li+; 4) high-level expression on complexation with Zn2+.     

Functional group-selective ion-molecule reactions of ethylene glycol and its monomethyl and dimethyl ethers

The selective methylation and methylene substitution reactions of dimethyl ether ions with ethylene glycol, ethylene glycol monomethyl ether, and ethylene glycol dimethyl ether were investigated in a quadrupole ion trap mass spectrometer. Whereas the reactions of ethylene glycol and ethylene glycol monomethyl ether with the methoxymethylene cation 45⁺ gave only [M + 13]⁺ product ions, the reaction of ethylene glycol dimethyl ether with the same reagent ion yielded exclusively [M + 15]⁺ ions. The relative rates of formation of these products and those from competing reactions were examined and rationalized on the basis of structural and electronic considerations. The heats of formation for various relevant species were estimated by computational methods and showed that the reactions leading to the [M + 13]⁺ ions were more energetically favorable than those leading to the [M + 15]⁺ products for cases in which both reactions are possible. Finally, the collision-induced dissociation behavior of the [M + H]⁺, [M + 13]⁺, and [M + 15]⁺ ions indicated that the and [M + H]⁺ rons dissociated by analogous pathways and were thus structurally similar, whereas the [M + 13]⁺ ions possessed distinctly different structural characteristics.     

Highly water-soluble neutral BODIPY dyes with controllable fluorescence quantum yields

A series of novel highly water-soluble neutral BODIPY dyes have been obtained by functionalization of BODIPY dyes with branched oligo(ethylene glycol)methyl ether groups at positions 8, 2 and 6 or 4 and 4'. Use of an ortho-substituent group of branched oligo(ethylene glycol)methyl ether on the meso-phenyl ring of BODIPY dyes and replacement of the fluorine atoms of BODIPY dyes at positions 4 and 4' with methyloxy or ethynyl subunits significantly enhance fluorescence quantum yields of BODIPY dyes.     

Molecular dynamics study of 2rotaxanes: influence of solvation and cation on co-conformation

The conformational preference of a [2]rotaxane system has been examined by molecular dynamics simulations. The rotaxane wheel consists of two bridged binding components: a cis-dibenzo-18-crown-6 ether and a 1,3-phenyldicarboxamide, and the penetrating axle consists of a central isophthaloyl unit with phenyltrityl capping groups. The influence of solvation on the co-conformation of the [2]rotaxane was evaluated by comparing the conformational flexibility in two solvents: chloroform and dimethyl sulfoxide. Attention was also paid to the effect of cation binding on the dynamical properties of the [2]rotaxane. The conformational stability of the [2]rotaxane was calculated using a MM/PB-SA strategy, and the occurrence of specific motions was examined by essential dynamics analysis. The changes in the co-conformational properties in the two solvents and upon cation binding are discussed in light of the available NMR data. The results indicate that in chloroform solution the [2]rotaxane system exists as a mixture of co-conformational states including some that have hydrogen bonds between axle C=O and wheel NH groups. Analysis of the simulations allow us to hypothesize that the [2]rotaxane's circumrotation motion can occur as the result of a dynamic process that combines a preliminary axle sliding step that breaks these hydrogen bonds and a conformational change in the ester group more distant from the wheel. In contrast, no hydrogen-bonded co-conformation was found in dimethyl sulfoxide, which appears to be due to the preferential formation of hydrogen bonds between the wheel NH groups with solvent molecules. Moreover, the axle experiences notable changes in anisotropic shielding, which would explain why the NMR signals are broadened in this solvent. Insertion of a sodium cation into the crown ether reduces co-conformational flexibility due to an interaction of the axle with the cation. Overall, the results reveal how both solvent and ionic atmosphere can influence the co-conformational preferences of rotaxanes.     

Metal ion separations with proton-ionizable crown ethers and their polymers

Abstract

Lipophilic crown ethers with pendent proton-ionizable groups are novel complexing agents for use in metal ion separations by solvent extraction. For a series of structurally related, lipophilic dibenzocrown ether carboxylic acids, the efficiency and selectivity of competitive alkali metal cation extraction for aqueous solution into chloroform is found to be strongly influenced by the crown ether ring size and the lipophilic group attachment site. Reaction of dibenzocrown ether carboxylic acids with formaldehyde in formic acid produces condensation polymers which possess both ion-exchange and cyclic polyether binding sites for metal ion complexation. These resins exhibit excellent exchange kinetics for competitive alkali metal cation sorption from aqueous solution and subsequent stripping and may be used in concentrator columns for the recovery of these metal ions from very dilute aqueous solution. Cation selectivity in the sorption and stripping steps is controlled by the structure of the crown ether monomer unit.     

Four‐State Molecular Shuttling of [2]Rotaxanes in Response to Acid/Base and Alkali‐Metal Cation Stimuli

In this study, we synthesized [2]rotaxanes possessing three recognition sites—a dialkylammonium, an alkylarylamine, and a tetra(ethylene glycol) stations—in their dumbbell‐like axle component and dibenzo[24]crown‐8 (DB24C8) as their macrocyclic component. These [2]rotaxanes behaved as four‐state molecular shuttles: i) under acidic conditions, the DB24C8 unit encircled both the dialkylammonium and alkylarylammonium stations; ii) under neutral conditions, the dialkylammonium unit was the predominant station for the DB24C8 component; iii) under basic conditions, when both ammonium centers were deprotonated, the alkylarylamine unit became a suitable station for the DB24C8 component; and iv) under basic conditions in the presence of an alkali‐metal cation, the tetra(ethylene glycol) unit recognized the DB24C8 component through cooperative binding of the alkali‐metal ion. In addition, we observed that the [2]rotaxanes exhibited selective recognition for metal cations. These shuttling motions of the macrocyclic component proceeded reversibly.     

Selective separation of alkali metal cations by bulk chloroform membranes containing lipophilic crown ether phosphonic acid monoethyl esters

A series of crown ether phosphonic acid monoethyl esters with crown ether ring size variation from 12-crown-4 to 24-crown-8 is used in bulk chloroform membranes to separate alkali metal cations from mixtures. Selective proton-coupled transport of alkali metal cations from weakly alkaline aqueous phases is achieved. With individual ionizable crown ether carriers, transport selectivity for Li⁺, Na⁺, K⁺, and Rb⁺-Cs⁺ is achieved. A closely related lipophilic phosphonic acid monoethyl ester derivative with a cyclohexyl unit in place of the crown ether exhibits transport selectivity for Li⁺. However, the corresponding phosphonic acid diethyl ester is devoid of transport activity. Effects of structural variation within the carrier upon the selectivity and efficiency of competitive alkali metal cation transport are assessed.     

Complex forming and extraction properties of oligo benzo-fused crown ethers

The complex forming properties with alkali metal and ammonium ions of a series of oligo benzo-condensed 18-crown-6 ethers1–8 having a different gradation of lipophilicity and of molecular rigidity are investigated by voltammetry at the interface of two immiscible electrolyte solutions (ITIES) and by a liquid-liquid extraction technique. The experimental results obtained in the two phase system H₂O/nitrobenzene are discussed in relation to the structure of the crown and the cation type. The stability constants for the 1 : 1 complexes of Na⁺, K⁺, Rb⁺, Cs⁺ and NH ₄ ⁺ in nitrobenzene have been determined and compared with the extraction constants for the 1: 1 complexes of Na⁺ and K⁺ and for the 1 : 1 and 1 : 2 complexes of Cs⁺, showing the effect of oligo benzo condensation for the 18-crown-6 system.     

Molecular Recognition by Cesium Tetrabenzo-24-Crown-8

Two crystal structures of cesium tetrabenzo-24-crown-8 complexes are reported. Solvent molecules 4-methylmorpholine (1) and ethylene glycol (2) are observed to coordinate cesium within two clefts created by the cation–crown ether complex. Careful examination of the structures suggests that while both complexes exhibit sterically crowded clefts, the binding of cesium to the crown ether is perturbed only in 2. C—H... hydrogen bonding is observed between the clefts and the included guests. The ethylene glycol complex 2 forms a complex O—H...O hydrogen bond network between free and bound glycol and nitrate.