Substituent chemical shifts of N‐arylsuccinanilic acids,N‐arylsuccinimides,N‐arylmaleanilic acids,and N‐arylmaleimides

NMR spectra of a series of N‐arylsuccinanilic acids, N‐arylsuccinimides, N‐arylmaleanilic acids, and N‐arylmaleimides were examined to estimate the electronic effect of the amide and imide groups on the chemical shifts of the hydrogen and carbon nuclei of the benzene ring. Copyright © 2009 John Wiley & Sons, Ltd.     

Aminophosphines derived from N‐phenylpiperazine and N‐ethylpiperazine: Synthesis,oxidation reactions,and molybdenum complexes

Functionalized aminophosphine of the type Ph₂PNR₂ ( 1,2 ) have been synthesized by treating Ph₂PCl with N‐phenylpiperazine or N‐ethylpiperazine. Oxidation of these ligands with aqueous hydrogen peroxide, elemental sulfur or selenium afforded the corresponding phosphine oxides 3,4 , sulfides 5,6 , and selenides 7,8 in good yields. The molybdenum complexes of the aminophosphines have been obtained. All new compounds were fully characterized by IR, NMR, and microanalysis, and the molecular structures of two representative compounds were determined by single‐crystal X‐ray crystallography. © 2011 Wiley Periodicals, Inc. Heteroatom Chem 22:679–686, 2011; View this article online at wileyonlinelibrary.com . DOI 10.1002/hc.20733     

Comparative studies on the pyrolysis of N‐arylideneaminoamides: Kinetic and mechanistic studies

Rates of thermal decomposition of title compounds have been measured using a static reaction system. They undergo a unimolecular first‐order elimination to give arylnitrile and the corresponding substituted amides. The decomposition parallels that of N‐arylidenamino cyclic amide. The relative elimination rates at 600 K were calculated. The kinetic data reveal that the electronic effects of substituents, such as methyl, phenyl, benzyl, and allyl groups, are associated with the opposing directions in which the lone pair of electrons on the nitrogen atom of the arylidene moiety is being delocalized. © 2006 Wiley Periodicals, Inc. Int J Chem Kinet 39: 59–66, 2007     

Terpolymerization kinetics of amino acid N‐carboxy anhydrides

Based on their versatility with respect to amino acid type and sequence, polypeptides have become attractive for a number of biological applications such as drug delivery, biomineralization, and drugs. N‐carboxy anhydride (NCA) polymerization is a convenient way to rapidly prepare high‐molecular weight polypeptides with good control over molecular weight and polydispersity. However, the kinetics of the incorporation of NCA monomers into copolypeptides during random copolymerization are poorly understood. Here, kinetic data is presented that allows insight into the NCA polymerization of a terpolymer composed of three commercially relevant amino acids, namely, glutamic acid, lysine, and tyrosine. Furthermore, kinetic data and copolymerization parameters from the copolymerization of binary mixtures of these three amino acid NCAs is used to make predictions of the terpolymer composition. This study provides access to the information necessary to prepare functional copolypeptides with better‐defined sequence architecture that will be essential for the future development of polypeptide‐based materials. © 2014 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2014 , 52, 1228–1236     

Kinetic and mechanistic studies on the oxidation of Norfloxacin by Chloramine‐B and N‐Chlorobenzotriazole in acidic medium

The kinetics of oxidation of Norfloxacin [1‐ethyl‐6‐fluoro‐1,4‐dihydro‐4‐oxo‐7‐(l‐piperazinyl)‐3‐quinoline carboxylic acid] by chloramine‐B and N‐chlorobenzotriazole has been studied in aqueous acetic acid medium (25% v/v) in the presence of perchloric acid at 323 K. For both the oxidants, the reaction follows a first‐order dependence on [oxidant], a fractional‐order on [Norfloxacin], and an inverse‐fractional order on [H⁺]. Dependence of reaction rate on ionic strength, reaction product, dielectric constant, solvent isotope, and temperature is studied. Kinetic parameters are evaluated. The reaction products are identified. The proposed reaction mechanism and the derived rate equation are consistent with the observed kinetic data. Formation and decomposition constants for substrate–oxidant complexes are evaluated. ©1999 John Wiley & Sons, Inc. Int J Chem Kinet 31: 153–158, 1999     

ESI‐MS/MS analysis of protonated N‐methyl amino acids and their immonium ions

Methylation is one of the important posttranslational modifications of biological systems. At the metabolite level, the methylation process is expected to convert bioactive compounds such as amino acids, fatty acids, lipids, sugars, and other organic acids into their methylated forms. A few of the methylated amino acids are identified and have been proved as potential biomarkers for several metabolic disorders by using mass spectrometry–based metabolomics workstation. As it is possible to encounter all the N‐methyl forms of the proteinogenic amino acids in plant/biological systems, it is essential to have analytical data of all N‐methyl amino acids for their detection and identification. In earlier studies, we have reported the ESI‐MS/MS data of all methylated proteinogenic amino acids, except that of mono‐N‐methyl amino acids. In this study, the N‐methyl amino acids of all the amino acids ( 1 ‐ 21 ; including one isomeric pair) were synthesized and characterized by ESI‐MS/MS, LC/MS/MS, and HRMS. These data could be useful for detection and identification of N‐methyl amino acids in biological systems for future metabolomics studies. The MS/MS spectra of [M + H]⁺ ions of most N‐methyl amino acids showed respective immonium ions by the loss of (H₂O, CO). The other most common product ions detected were [MH‐(NH₂CH₃]⁺, [MH‐(RH)]⁺ (where R = side chain group) ions, and the selective structure indicative product ions due to side chain and N‐methyl group. The isomeric/isobaric N‐methyl amino acids could easily be differentiated by their distinct MS/MS spectra. Further, the MS/MS of immonium ions inferred side chain structure and methyl group on α‐nitrogen of the N‐methyl amino acids.     

HPLC determination of acidic d‐amino acids and their N‐methyl derivatives in biological tissues

d ‐Aspartate (d ‐Asp) and N‐methyl‐d ‐aspartate (NMDA) occur in the neuroendocrine systems of vertebrates and invertebrates, where they play a role in hormone release and synthesis, neurotransmission, and memory and learning. N‐methyl‐d ‐glutamate (NMDG) has also been detected in marine bivalves. Several methods have been used to detect these amino acids, but they require pretreatment of tissue samples with o‐phthaldialdehyde (OPA) to remove primary amino acids that interfere with the detection of NMDA and NMDG. We report here a one‐step derivatization procedure with the chiral reagent N‐α‐(5‐fluoro‐2,4‐dinitrophenyl)‐(d or l )‐valine amide, FDNP‐Val‐NH₂, a close analog of Marfey's reagent but with better resolution and higher molar absorptivity. The diastereomers formed were separated by HPLC on an ODS‐Hypersil column eluted with TFA/water–TFA/MeCN. UV absorption at 340 nm permitted detection levels as low as 5–10 pmol. d ‐Asp, NMDA and NMDG peaks were not obscured by other primary or secondary amino acids; hence pretreatment of tissues with OPA was not required. This method is highly reliable and fast (less than 40 min HPLC run). Using this method, we detected d ‐Asp, NMDA and NMDG in several biological tissues (octopus brain, optical lobe and bucchal mass; foot and mantle of the mollusk Scapharca broughtonii), confirming the results of other researchers. Copyright © 2009 John Wiley & Sons, Ltd.     

Synthesis,experimental and in silico studies of N‐fluorenylmethoxycarbonyl‐O‐tert‐butyl‐N‐methyltyrosine,coupled with CSD data: a survey of interactions in the crystal structures of Fmoc–amino acids

Recently, fluorenylmethoxycarbonyl (Fmoc) amino acids (e.g. Fmoc–tyrosine or Fmoc–phenylalanine) have attracted growing interest in biomedical research and industry, with special emphasis directed towards the design and development of novel effective hydrogelators, biomaterials or therapeutics. With this in mind, a systematic knowledge of the structural and supramolecular features in recognition of those properties is essential. This work is the first comprehensive summary of noncovalent interactions combined with a library of supramolecular synthon patterns in all crystal structures of amino acids with the Fmoc moiety reported so far. Moreover, a new Fmoc‐protected amino acid, namely, 2‐{[(9H‐fluoren‐9‐ylmethoxy)carbonyl](methyl)amino}‐3‐{4‐[(2‐hydroxypropan‐2‐yl)oxy]phenyl}propanoic acid or N‐fluorenylmethoxycarbonyl‐O‐tert‐butyl‐N‐methyltyrosine, Fmoc‐N‐Me‐Tyr(t‐Bu)‐OH, C₂₉H₃₁NO₅, was successfully synthesized and the structure of its unsolvated form was determined by single‐crystal X‐ray diffraction. The structural, conformational and energy landscape was investigated in detail by combined experimental and in silico approaches, and further compared to N‐Fmoc‐phenylalanine [Draper et al. (2015). CrystEngComm, 42 , 8047–8057]. Geometries were optimized by the density functional theory (DFT) method either in vacuo or in solutio. The polarizable conductor calculation model was exploited for the evaluation of the hydration effect. Hirshfeld surface analysis revealed that H…H, C…H/H…C and O…H/H…O interactions constitute the major contributions to the total Hirshfeld surface area in all the investigated systems. The molecular electrostatic potentials mapped over the surfaces identified the electrostatic complementarities in the crystal packing. The prediction of weak hydrogen‐bonded patterns via Full Interaction Maps was computed. Supramolecular motifs formed via C—H…O, C—H…π, (fluorenyl)C—H…Cl(I), C—Br…π(fluorenyl) and C—I…π(fluorenyl) interactions are observed. Basic synthons, in combination with the Long‐Range Synthon Aufbau Modules, further supported by energy‐framework calculations, are discussed. Furthermore, the relevance of Fmoc‐based supramolecular hydrogen‐bonding patterns in biocomplexes are emphasized, for the first time.     

Synthesis of o-glycosides of dipeptides containingβ-hydroxy amino acids

Conclusions The O--D-galactopyranosides of some serine-containing dipeptides were synthesized.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 9, pp. 2092–2094, September, 1971.     

Kinetic and mechanistic studies of some aliphatic amines' oxidation by sodium N‐bromo‐p‐toluenesulfonamide in hydrochloric acid medium

Oxidations of n‐propyl, n‐butyl, isobutyl, and isoamyl amines by bromamine‐T (BAT) in HCl medium have been kinetically studied at 30°C. The reaction rate shows a first‐order dependence on [BAT], a fractional‐order dependence on [amine], and an inverse fractional‐order dependence on [HCl]. The additions of halide ions and the reduction product of BAT, p‐toluenesulfonamide, have no effect on the reaction rate. The variation of ionic strength of the medium has no influence on the reaction. Activation parameters have been evaluated from the Arrhenius and Eyring plots. Mechanisms consistent with the preceding kinetic data have been proposed. The protonation constant of monobromamine‐T has been evaluated to be 48 ± 1. A Taft linear free‐energy relationship is observed for the reaction with ρ* = −12.6, indicating that the electron‐donating groups enhance the reaction rate. An isokinetic relationship is observed with β = 350 K, indicating that enthalpy factors control the reaction rate. © 2000 John Wiley & Sons, Inc. Int J Chem Kinet 32: 776–783, 2000     

Synthesis and structural studies of new N‐(p‐toluenesulfonyl)amino acid o‐phenolamides

N‐(p‐Toluenesulfonyl)glycine o‐phenolamide ( 3a ) and the analogous derivatives of d,l‐alanine ( 3b ), L ‐valine ( 3c ), L ‐leucine ( 3d ), and L ‐phenylalanine ( 3e ) were synthesized in yields >80% by condensation of N‐(p‐toluenesulfonyl)amino acyl chlorides with o‐aminophenol. The structure and conformation of these amides were established by NMR spectroscopy and X‐ray crystallography. © 2003 Wiley Periodicals, Inc. Heteroatom Chem 14:247–253, 2003; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/hc.10135     

Kinetics and mechanism of oxidation of a ternary complex involving dipicolinatochromium(III) and DL‐aspartic acid by N‐bromosuccinimide

The kinetics of oxidation of [Cr^III(Dpc)(Asp)(H₂O)₂] (Dpc = dipicolinic acid and Asp = DL ‐aspartic acid) by N‐bromosuccinimide (NBS) in aqueous solution have been found to obey the equation: where k₂ is the rate constant for the electron transfer process, K₁ is the equilibrium constant for deprotonation of [Cr^III(Dpc)(Asp)(H₂O)₂], K₂ and K₃ are the pre‐equilibrium formation constants of precursor complexes [Cr^III(Dpc)(Asp)(H₂O)(NBS)] and [Cr^III(Dpc)(Asp)(H₂O)(OH)(NBS)]^?. Values of k₂ = 4.85 × 10^?2 s^?1, K₁ = 1.85 × 10^?7 mol dm^?3, and K₂ = 78.2 mol^?1 dm³ have been obtained at 30°C and I = 0.1 mol dm^?3. The experimental rate law is consistent with a mechanism in which the deprotonated [Cr^III(Dpc)(Asp)(H₂O)(OH)]^? is considered to be the most reactive species compared to its conjugate acid. It is assumed that electron transfer takes place via an inner‐sphere mechanism. © 2004 Wiley Periodicals, Inc. Int J Chem Kinet 36: 394–400, 2004     

N‐bromosuccinimide catalyzed condensations of indoles with carbonyl compounds under solvent‐free conditions

NBS was found to be an efficient catalyst for condensations of indoles with aldehydes or ketones in the absence of solvent.     

Synthesis of N‐Tosylhomosphinganine and N‐Tosylsedridine

A straightforward synthesis of N‐tosylhomosphinganine and N‐tosylsedridine has been achieved from trans‐4‐hydroxyproline by Grignard addition, regioselective Baeyer‐Villiger reaction, cross or ring‐closing metathesis and hydrogenation as the key steps.     

Radiation-induced destruction of hydroxyl-containing amino acids and dipeptides

The yields of molecular products resulting from radiolysis of hydroxyl-containing amino acids and dipeptides under various conditions were determined. The possibility of a new radiation-induced destruction pathway has been shown for serine and threonine, as well as for the dipeptides having residues of these amino acids at the N-terminal part of the respective molecule. This process includes formation of N-centered radicals from the starting molecules followed by their decomposition with elimination of side substituents. On radiolysis, serine and threonine were also shown to undergo free-radical destruction to form acetaldehyde and acetone, respectively. A mechanism has been proposed including consecutive stages of fragmentation of α-hydroxyl-containing carbon-centered radicals with elimination of ammonia and decomposition of the secondary radicals with elimination of CO₂. The yields of CO₂ obtained on radiolysis of serine and threonine were significantly higher (except for solutions at pH 12) than those for alanine and valine, which have no hydroxyl groups in their structures. The obtained data indicate that the hydroxyl-containing amino acids occupy a special place among other amino acids as regards the variety of radiation-induced reactions which they may undergo due to their structural features.     

Synthesis and cytotoxicity of silylalkylthio‐substituted N‐heterocycles and their hydroselenites

New hydroselenites of the different silylalkylthio‐substituted N‐heterocycles have been prepared by the reaction of selenium dioxide with N‐heterocycles in an aqueous medium. Their structure was confirmed by ¹H, ¹³C, and ⁷⁷Se NMR data. Most of these silylalkylthio‐substituted N‐heterocycles and their hydroselenites have an expressed cytotoxic activity on the MG‐22A (mouse hepatoma), HT‐1080 (human fibrosarcoma), B16 (mouse melanoma), and Neuro 2A (mouse neuroblastoma) cell lines. Some of the hydroselenites exhibit free‐radical protection simultaneously with a high cytotoxic effect. The substances studied were also active in vivoagainst sarcoma S‐180. Copyright © 2003 John Wiley & Sons, Ltd.     

Nano‐sized metal complexes of azo L‐histidine: Synthesis,characterization and their application for catalytic oxidation of 2‐amino phenol

A novel azo dye ligand formed by the coupling of L‐histidine with 2‐hydroxy‐1‐naphthaldyhide(H₂L) and its Ru³⁺, Pd²⁺ and Ni²⁺ nano‐sized complexes were obtained and described by elemental analysis, TGA, magnetic moment measurements, molar conductance, UV‐Vis, ESR, X‐ray powder diffraction, IR, SEM, TEM, ¹H‐nmr, ¹³C‐nmr, and EI‐mass spectral studies. The analytical results and spectral studies detected that the H₂L ligand acts as dibasic tetradentate via aldehyde oxygen, azo nitrogen and deprotonated OH and COOH groups. The data showed the paramagnetic Ru³⁺ complex has octahedral geometry while Pd²⁺ and Ni²⁺ have square planar structures. The molar conductance measurements display all complexes are nonelectrolyte. The crystallinity, morphology and average particle size data revealed the prepared complexes were formed in the Nano scale. The average particle size as calculated from TEM images are found to be 13.72, 64.52 and 115.00 nm for Ru³⁺, Pd²⁺ and Ni²⁺ chelates, respectively. The catalytic activities of these compounds were checked for oxidation of 2‐amino phenol to 2‐amino‐3H phenoxazine‐3‐one as heterogeneous catalysts. A 96, 31 and 21% catalytic conversion are found when using Ru(III), Pd(II) and Ni(II) complexes respectively.     

Synthesis,kinetics, and mechanism of bromophenols by N‐bromophthalimide in aqueous acetic acid

The kinetics and mechanism of bromination of phenol and its substituents, viz. 4‐chlorophenol, 4‐bromophenol, 4‐methylphenol, and 4‐methoxyphenol by N‐bromophthalimide (NBP) in the presence of mercuric acetate in the temperature range of 303–318 K in aqueous acetic acid medium have been investigated. The reaction follows first‐order dependence on [NBP] and fractional order dependence of rate on [Phenol]. The activation parameters have been evaluated, and based on the observed kinetic results the probable mechanism has been proposed. Observed kinetic features and Hammett's reaction constant (ρ) suggests that bromination occurs through electrophilic substitution of bromonium ion (Br⁺) into the aromatic ring in the transition state. Large negative entropy of activation values probably suggests the rigid nature of transition state.     

Kinetics and mechanism of oxidation of neutral α ‐amino acids by sodium N‐chloro‐p‐toluenesulfonamide in acid medium

Kinetics of oxidation of α ‐amino acids, glycine, valine, alanine, and phenylalanine, by sodium N‐chloro‐p‐toluenesulfonamide or chloramine‐T (CAT) has been investigated in HClO₄ medium at 30°C. The rate shows first‐order dependence on both CAT and amino acid concentrations and an inverse first‐order on [H⁺]. The variation of ionic strength and the addition of p‐toluenesulfonamide and Cl^? ion had no effect on the reaction rate. Decrease of dielectric constant of the medium by increasing the MeOH content decreased the rate. Rate studies in D₂O medium showed the inverse solvent‐isotope effect of k_D2O/k_H2O=0.50. Proton‐inventory studies were carried out using H₂O–D₂O mixtures. The activation parameters have been computed. The proposed mechanism and the derived rate law are consistent with the observed kinetic data. An isokinetic relationship is observed with β=323 K, indicating enthalpy as a controlling factor. The rate of oxidation increases in the following order: Gly < Val < Phe < Ala. © 2001 John Wiley & Sons, Inc. Int J Chem Kinet 34: 49–55, 2002