Theoretical study on the alkaline hydrolysis of methyl thioacetate in aqueous solution

A base-catalyzed hydrolysis reaction of thiolester has been studied in both gas and solution phases using two ab initio quantum mechanics calculations such as Gaussian09 and CPMD. The free-energy surface along the reaction path is also constructed using a configuration sampling technique, namely, the metadynamics method. While there are two different reaction paths obtained for the potential profile of the base-catalyzed hydrolysis reaction for thiolester in the gas phase, a triple-well reaction path is computed for the reaction in the solution phase by two quantum mechanics calculations. Unlike the S(N)2 mechanism (a concerted mechanism) found for the gas-phase reaction, a nucleophilic attack from the hydroxide ion on the carbonyl carbon to yield a tetrahedral intermediate (a stepwise mechanism) is observed for the solution-phase reaction. Moreover, the energy profiles computed by these two theoretical calculations are found to be very comparable with those determined experimentally.     

烷基自由基β位裂解反应类反应势垒与速率常数的精确计算

提出反应类等键方法并用于高温燃烧机理中一类重要反应——烷基自由基β位裂解反应的反应势垒和速率常数的精确校正计算. 通过10种不同从头算水平对类反应中5个代表反应的反应势垒的计算发现, 用反应类等键反应方法和直接从头算方法获得的5 个代表反应的反应势垒最大绝对偏差的平均值分别为5.32 和16.16 kJ·mol^-1, 表明反应类等键反应方法计算的反应势垒对不同水平从头算方法的依赖性小, 可在较低从头算水平计算得到精确的反应势垒, 解决大分子体系反应势垒的精确计算问题. 此外应用反应类等键反应方法在BHandHLYP/cc-pVDZ 从头算水平计算了3 个代表反应的速率常数, 并与文献报道的实验值进行了比较, 其在500-2000 K温度区间内计算速率常数与实验速率常数中较大值与较小值的比值k_max/k_min的平均值为1.67, 最大值也仅有2.49. 表明应用反应类等键反应方法在较低从头算水平即可对同类反应的速率常数进行精确计算.最后在BHandHLYP/cc-pVDZ从头算水平用反应类等键反应方法计算了13个烷基自由基β位裂解反应的速率常数.     

Quantum chemical simulation of the reaction of methane with gold(I) acetylacetonate and aquaacetylacetonate complexes

The interaction between methane and gold(I) acetylacetonate via electrophilic substitution (reaction (I)) and oxidative addition (reaction (II)) is simulated. In both cases, the formation of the products is thermodynamically favorable: the decrease in energy is 31 kcal/mol for reaction (I) and 26 kcal/mol for reaction (II). The product of reaction (II) is additionally stabilized by Au-H interaction. Both reactions have a low activation barrier and proceed via the formation of structurally different methane complexes reducing the energy of the system by 9.3 kcal/mol for reaction (I) and by 10.9 kcal/mol for reaction (II). The complex [Au(H₂O)(acac)] is also capable of forming methane complexes. These complexes result from a thermally neutral reaction and turn into products after overcoming a low energy barrier. The structure of the complex activating methane in the gold-rutin system is deduced from the data obtained.     

烷烃与氢过氧自由基氢提取反应类反应能垒与速率常数的精确计算

氢过氧自由基从烷烃分子中提取氢的反应是碳氢燃料中低温燃烧化学中非常重要的一类反应。本文用等键反应方法计算了这一类反应的动力学参数。所有反应物、过渡态、产物的几何结构均在HF/6-31+G(d)水平下优化得到。以反应中的过渡态反应中心的几何结构守恒为判据,该反应类可用等键反应处理。本文选取了乙烷和氢过氧自由基的氢提取反应为参考反应,其它反应作为目标反应,用等键反应方法对目标反应在HF/6-31+G(d)水平的近似能垒和反应速率常数进行了校正。为了验证方法的可靠性,选取C5以下的烷烃分子体系,对等键反应方法校正结果和高精度CCSD(T)/CBS直接计算结果进行了比较,最大绝对误差为5.58k J?mol~(-1),因此,采用等键反应方法只需用低水平HF从头算方法就可以再现高精度CCSD(T)/CBS计算结果,从而解决了该反应类中大分子体系的能垒的精确计算。本文的研究为碳氢化合物中低温燃烧模拟中重要的烷烃与氢过氧自由基氢提取反应提供了准确的动力学参数。     

(4-溴甲基双环[4.4.1]-1,3,5,7,9-十一碳五烯基-3-)甲醇环氧化反应机理的理论研究

A reaction mechanism of epoxidation reaction of the 4-(bromomethyl)bicyclo4.4.1undeca-1,3,5,7,9-pentaen-3-ylmethanol has been studied by using the density functional theory(DFT) method at B3LYP level with 6 31G* basis set. The geometric structures of reactant, product and transition state have been optimized. The transition state is found by the QST2 method and characterized by the vibration frequency analysis. The intrinsic reaction coordinate(IRC) for this reaction is traced and confirms the reaction mechanism. The changes and the nature of related chemical bonds along the IRC path have been analyzed by the theory of electronic charge density. The result shows that the elimination reaction and ring closing reaction are synergistic, and the hydrogen in the elimination reaction derives from hydroxyl. In addition, the activation energy of the reaction is 139.2 kJ/mol.     

反应类等键反应方法及类反应热动力学参数计算

本文提出了反应类等键反应方法,将通常用于热力学性质计算的等键反应方法推广用于类反应中反应势垒和反应焓变的计算. 对碳氢燃料低温燃烧反应机理中的一类重要反应类：?烷基自由基过氧化氢裂解生成烯烃和HO2自由基的反应势垒和反应焓变进行了计算. 通过对该类16个反应中的5个代表反应分别在不同计算水平HF、DFT、MP2、CCSD(T)的比较计算发现,采用等键反应方法可在较低从头算级别计算得到类反应较高精度的反应势垒,提高了计算的效率和精度. 本文采用反应类等键反应方法在B3LYP/6-311G(d,p)计算水平对该类16个反应进行了反应势垒和反应焓变的计算,并建立了反应势垒和反应能的线性自由能关系：delta V=71.02+0.41?delta E.     

N-硬脂酰基亮氨酸的合成

采用酰氯化反应与缩合反应两步法合成N -硬脂酰基亮氨酸。以硬脂酸和亚硫酰氯为原料 ,n(硬脂酸 )∶n(亚硫酰氯 ) =1∶1 .5 ,在 80℃下冷凝回流 6h酰氯化反应合成硬脂酰氯 ,硬脂酰氯经减压蒸馏收集 1 70～2 0 0℃的馏分得到。硬脂酰氯收率为 65 %。硬脂酰氯再与亮氨酸的氢氧化钠溶液在冰水浴中进行Schotten -Baumann缩合反应制得N -硬脂酰基亮氨酸。缩合反应最佳工艺条件是反应溶液pH值控制为 9.0。反应后滴加1mol/L盐酸至pH =5 .0～ 6.0 ,加入正己烷使N -硬脂酰基亮氨酸处于水层中 ,分离并蒸干水层溶液得含NaCl的混合物。用无水乙醇萃取混合物 ,萃取液蒸干得产物。N -硬脂酰基亮氨酸收率为 75 %     

中度气化煤焦异相还原NO机理

采用量子化学密度泛函理论结合热力学和动力学研究了中度气化的锯齿形煤焦异相还原NO的反应机理。分析了中度气化煤焦异相还原NO的反应路径、异相还原过程中的能量变化以及热力学和动力学分析。结果表明,中度气化煤焦更易于NO的吸附,IM2→IM3的开环过程为整个反应的决速步,所需克服能垒最大（398.03 kJ/mol）。中度气化煤焦异相还原NO的反应在煤燃烧系统中为可自发的放热反应,且为单向反应。根据决速步理论,反应的进行需克服较大活化能（389.83 kJ/mol）,同时根据阿伦尼乌斯公式,总体反应速率受温度影响较大,温度越高反应速率越快,越利于NO还原。     

Reaction path synthesis methodology for waste minimization

Being the core of whole process, a chemical process is a key step for reducing waste generation. Therefore, to organize a reasonable reaction path is very important for reducing waste emission. Because of the large amount of the feasible reaction path and other factors in a chemical reaction system, the opti-mizing for reaction path is difficult. Since the reaction path synthesis problem has presented, lots of re-searchers focused on it. At the beginning, only chem-ists took the research work,…     

高纯度树状大分子聚酰胺-胺的合成与表征

以乙二胺为核,通过Michael加成,与丙烯酸甲酯交替反应,合成了0.5代到5.0代聚酰胺 胺树状大分子。 利用傅里叶变换红外光谱、核磁共振氢谱、液相色谱和元素分析等对各代产品进行了表征,探索了反应温度、时间及反应物配比对产物的影响,确定生成聚酰胺-胺(PAMAM)的半代产物时反应温度为25 ℃,整代产物时反应温度为35 ℃;0.5G的反应时间为18 h,1.0G、1.5G的反应时间为24 h,2.0G、2.5G反应36 h,3.0G、3.5G反应48 h,4.0G、4.5G反应3 d,5.0G反应4 d。 分离提纯是树状大分子制备中遇到的最大困难,通过选择性溶剂萃取的方法对产品分离纯化,筛选出乙醚作萃取剂、甲醇作溶剂交换剂,大大提高了产品的纯度。     

Organocatalytic Formation of Chiral Trisubstituted Allenes and Chiral Furan Derivatives

A novel reaction that provides chiral allenes by amino catalytic activation of either aldehydes or α,β‐unsaturated aldehydes for reaction with alkynyl‐substituted enones is presented. The reaction forms a variety of trisubstituted allenes in high yields and with excellent stereoselectivities. The utility of the reaction concept is demonstrated by the synthesis of chiral furan derivatives in high yields and stereoselectivities.     

MINDO/3研究胞嘧啶异构体间异构化反应——Ⅰ. N1-氢-4-氨基-2-羰基胞嘧啶与4-亚氨基-2-羰基胞嘧啶异构反应

本文报导用半经验方法研究N_1-氢-4-氨基-2-羰基胞嘧啶与4-亚氨基-2-羰基胞嘧啶异构化反应。用MINDO/3能量梯度法优化了孤立体系的全部自由度, 计算结果表明氨型比亚氨型稳定, △E=33.85 kJ mol~(-1); 限定分子体系在同一平面, 用Powell法优化过渡态几何构型, 计算所得正反应活化势垒为168.87 kJ mol~(-1), 逆反应活化势垒为135.02 kJ mol~(-1)。从IRC途径分析了该异构化反应的物理实质。     

Catalytic mechanism of class A beta-lactamase. I. The role of Glu166 and Serl30 in the deacylation reaction

The tetrahedral intermediate formation process, which is the first step in the deacylation reaction by class A beta-lactamase, was investigated by the ab initio molecular orbital method. In this study, benzyl penicillin was used as the substrate. From the results of our molecular dynamics study of the structure of beta-lactam antibiotics-beta-lactamase complex, the substrate, Ser70, Lys73, Ser130, Glu166 and a water molecule for the deacylation reaction were considered for construction of a model for calculation. The calculation results indicated that Glu166 plays a role in holding a water molecule, which is necessary for the deacylation reaction, and that the hydrogen bond network among Lys73Nzeta, Ser130Ogamma, and the carboxyl group of the beta-lactam antibiotics was formed by the uptake of beta-lactam antibiotics by beta-lactamase. The activation energy for this reaction was 33.3 kcal/mol, and it is very likely that the reaction occurred at body temperature. Subsequent calculation results obtained by using the model excluding Ser130 and the carboxyl group of the substrate indicated that the activation energy for this reaction was 40.8 kcal/mol, which is 7.5 kcal/mol higher than that of the previous reaction. It was found that the hydrogen bond network plays an important role in decreasing the activation energy for the tetrahedral intermediate formation reaction. Lys73Nzeta, which is located at the edge of the hydrogen bond network, played a role in forming a hydrogen bond with Glu166Oepsilon in order to help the deacylation reaction. The role of amino acid residues around the active site of class A beta-lactamase was also discussed.     

Application of competitive reaction systems to catalytic kinetic analysis-determination of phosphate

A technique is described for the determination of catalytically active substances, in which a slow catalysed reaction is coupled to a fast competitive reaction. One reactant, which at the same time serves as the indicator substance, is removed by the slow reaction as well as by the competitor added to the system from outside. Under suitable conditions the time for the complete removal of the indicator substance is dependent only on the rate of the catalysed reaction and consequently on the catalyst concentration. The technique is illustrated by means of the phosphate-catalysed reduction of Mo(VI) by ascorbic acid.     

甘氨酸螯合钙的合成与性能研究

以甘氨酸和金属钙盐为原料,采用水体系合成法制备甘氨酸钙螯合物,探讨不同反应温度、反应时问、反应体系pH等对产品产率的影响,从而确定反应的最佳条件,并对甘氨酸钙螯合物采用傅里叶红外光谱FT-IR进行表征。实验结果表明,合成甘氨酸钙螯合物的最适反应条件是,反应体系pH为5～6,反应时间为2～3h,反应温度为70～80℃。     

Cholesterol study: Reaction plateau and kinetic determinations

A study has been described of a comparison between reaction plateaus and kinetic modes for measuring cholesterol. A similar investigation of bilirubin reactions under the same procedural conditions was also carried out because this compound is a major interference which is frequently encountered in abnormal serums. The findings indicate that bilirubin is a more sensitive reactant than cholesterol by LB reaction but that its effect as an interference can be lessened by a kinetic approach providing that the effect of H₂O on reaction velocity and molar absorptivity can be minimized. An iron reaction even though more sensitive proved less workable in the kinetic mode owing to reaction velocity and the presence of air bubbles. However, its reaction plateau characteristics were superior to the LB reaction because of a favorable ratio of colors generated for the two reacting constituents. Based on this study, it is predictable that a kinetic approach is quite workable for the LB reaction and could be made more workable for the iron reaction if, in the latter case, conditions perhaps such as temperature and reaction media, could be altered to slow the rate of color formation.     

Implicit versus explicit solvent in free energy calculations of enzyme catalysis: Methyl transfer catalyzed by catechol O-methyltransferase

We compare free energy calculations for the methyl transfer reaction catalyzed by catechol O-methyltransferase using the quantum mechanical/molecular mechanical free energy method with implicit and explicit solvents. An analogous methylation reaction in a solution is also studied. For the explicit solvent model, we use the three-point transferable intermolecular potential model, and for the implicit model, we use the generalized Born molecular volume model as implemented in CHARMM. We find that activation and reaction free energies calculated with the two models are very similar, despite some structural differences that exist. A significant change in the polarization of the environment occurs as the reaction proceeds. This is more pronounced for the reaction in a solution than for the enzymatic reaction. For the enzymatic reaction, most of the changes take place in the protein rather than in the solvent, and, hence, the benefit of having an instantaneous relaxation of the solvent degrees of freedom is less pronounced for the enzymatic reaction than for the reaction in a solution. This is a likely reason why energies of the enzyme reaction are less sensitive to the choice of atomic radii than are energies of the reaction in a solution.     

Interaction of dimethyl carbonate with anilines in the presence of potassium methylate: Kinetics and the role of the base

The kinetic patterns of the reaction between dimethyl carbonate and anilines in the presence of a potassium methylate as a catalyst were studied. The mechanism of aminolysis was clarified, which includes the detachment of the proton from the amino group of aniline and the subsequent attack of the resulting anion on the carbonyl group of dimethyl carbonate. It is shown that when the reaction occurs in the dimethyl carbonate-methanol 3:1 system, the process can be described as an irreversible first-order reaction in the aniline though the target reaction is complicated by side interaction between potassium methylate and dimethyl carbonate. The rate constants of the target reaction with substituted anilines and of the side reaction in the temperature range of 70-90°C were determined. It is shown that the influence of the substituent on the reaction rate is described by the Hammett equation, with the constant of the reaction series being positive and the best correlation being achieved for σ-scale. The results obtained are consistent with the proposed mechanism of the reaction and are explained by the facilitation of the aniline deprotonation with increasing acceptor properties of the substituent. Effective activation energies for the reaction of various anilines with dimethyl carbonate are found.     

浅析有机化学反应机理的教与学

有机化学的基本理论和反应机理是有机化学的核心内容。反应机理的教与学是有机化学教学过程中的难点,一直困扰着教师和学生。笔者采用了"教师引导–学生练习–学生综合讲解"三段式的反应机理教学方式。首先是教师引导:教师结合国内外教材和文献,先讲授基本理论,再详细讲解反应机理;接着是学生练习:教师根据教学进度布置习题让学生练习,然后结合前后相关的反应机理,组装成比较复杂的多步反应,要求学生根据机理推导反应产物;最后是学生综合讲解:给每个学生分配一个反应,要求围绕该反应,通过查阅文献和资料,整理好素材,在课堂上讲解展示反馈,教师据此进行补充和修改。经过实践证明,该方式便于学生理解有机化学反应机理,从而达到事半功倍的教学效果。     

A facile one-pot protocol for the synthesis of tetrazolyl-tetrahydroisoquinolines via novel domino intramolecular cyclization/Ugi-azide sequence

A facile one-pot, four-component domino reaction between 2-(2-bromoethyl)benzaldehyde, isocyanide, amine, and azide for the synthesis of tetrazolyl-tetrahydroisoquinoline derivatives has been developed. The reaction sequence involves intramolecular replacement of halide by iminium nitrogen followed by Ugi-azide reaction. The reaction is catalyst/additive free and takes place under ambient conditions with short reaction times to furnish products in good to excellent yields.