Conformations of fused cycloalkanes in organometallic complexes : IV. The crystal and molecular structure of tricyclo-[6.4.0.02.7]dodeca-3,5-dienetricarbonyliron

The precise molecular structure of the title compound has been determined by single crystal X-ray diffractometry. It consists of a cyclohexadiene ring fused at the 5 and 6 positions to a cyclobutane ring which is in turn fused to a cyclohexane ring. The two six-membered rings are trans to each other with respect to the shared four-membered ring. The Fe(CO)₃ moiety is bound in the usual way to the conjugated diene portion of the cyclohexadiene ring. The feature of greatest interest is the mutual influence of the conformations of the two fused cycloalkane rings, whose intrinsically preferred conformations are mutually incompatible. Under the influence of the fused cyclohexadiene ring the C₄ ring would tend to be planar, while the cyclohexane ring would tend, of itself, to have a chair conformation. The actual result is a compromise, with the C₄ ring being folded by 15° along its diagonal and the C₆ ring having a conformation intermediate between planarity and a chair. Crystallographic data: space group, P2₁, Z = 2. Unit cell dimensions at 3°C are a = 6.176(1), b = 11.307(2), c = 9.781(2) Å and β = 92.89(2)°. A set of 1733 reflections having 2θ(Mo-K_α) < 63.7° and I > σ(I) was refined to convergence (R₁ = 0.055; R₂ = 0.034) with hydrogen atoms refined isotropically and all others anisotropically.     

The crystal and molecular structure of hexadecaphenyloctasiloxyspiro(9,9)titanate(IV)

The crystal and molecular structures of the title compound have been determined by single crystal X-ray diffraction methods. In the spiro molecule, the metal atom has a geometry very close to tetrahedral, with OTiO angles of 107.9–111.0(2)° and very short TiO bonds of length 1.777–1.791(5)Å. The two TiO₅Si₄ rings have different, ill-defined conformations; the SiO bond lengths and SiOSi angles are similar to those in (SiO)_n rings.     

Conformational analysis of mesocyclic polythioethers : Crystal and molecular structures of 1,4-dithiacycloheptane, 1,5-dithiacyclononane and 1,6-dithiacyclodecane

The crystal and molecular structures of 1,4-dithiacycloheptane (1,4-DTCH), 1,5-dithiacyclononane (1,5-DTCN), and 1,6-dithiacyclodecane (1,6-DTCD) have been determined by single crystal X-ray studies. These compounds crystallize in the space groups P2₁2₁2₁ (No. 19), P2₁/c (No. 14), and P2₁/n, respectively with a = 5.409(1), b = 10.883(2), c = 11.390(2) Å, Z = 4; a = 9.600(4), b = 12.378(8), c = 7.904(3) Å, /gb = 113.31(3)°, Z = 4; and a = 5.290(1), b = 12.853(3), c = 6.850(2) Å, β = 93.39(2)°, Z = 2, respectively. The nonhydrogen atoms were located using direct methods and the hydrogen atoms were found by Fourier difference maps. Full-matrix least-squares refinement led to conventional R factors of 0.0459, 0.0558 and 0.0314, respectively. The conformations adopted by 1,4-DTCH, 1,5-DTCN and 1,6-DTCD, in the crystalline slate, are twist chair (C₂ symmetry), twist boat chair (C₂ symmetry), and boat chair boat (C_2k symmetry), respectively. The transannular S-S distances are 3.583, 4.108 and 4.864 Å, respectively.     

Crystal structure of a liquid crystal non‐symmetric dimer: cholesteryl 4‐[4‐(4‐n‐butylphenylethynyl)phenoxy]butanoate

The crystal structure of cholesteryl 4‐[4‐(4‐n‐butylphenylethynyl)phenoxy]butanoate [phase sequence: Cr 155°C (46.1?J?g^?1) SmA 186.8°C (1.5?J?g^?1) TGB‐N* 204.7 (6?J?g^?1) I] has been solved from single crystal X‐ray diffraction data. The compound crystallizes in the monoclinic space group P2₁ with unit cell parameters: a?=?13.129(2), b?=?9.3904(10), c?=?17.4121(8)?Å, β?=?92.790(7)°, Z?=?2. The structure has been solved by direct methods and refined to R?=?0.0606 for 3?250 observed reflections. The bond distances and angles are in good agreement with the corresponding values for compounds containing phenyl and cholesterol moieties. The phenyl rings A and B are planar. The dihedral angle between the least‐squares planes of the two phenyl rings is 28°. The cholesterol moiety has the usual structure: the C and E rings have chair conformations, and the D and F rings adopt half‐chair conformations. The molecules in the unit cell are arranged in an antiparallel manner. The crystal structure is stabilized by an intermolecular C–H…O contact of 2.989(10)?Å.     

17‐Oxo‐5α‐androst‐6‐en‐3β‐yl acetate

In the title compound, C₂₁H₃₀O₃, a potential inhibitor of aromatase, all rings are fused trans. Rings A and C have chair conformations which are slightly flattened, whereas the conformation of ring B is close to a half‐chair. Ring D has a 14α‐envelope conformation. The steroid nucleus has a small twist, as shown by the C19—C10⋯C13—C18 (steroid numbering) torsion angle of −6.9 (3)°. Ab initio calculations of the equilibrium geometry of the mol­ecule reproduce this small twist, which appears to be due to the conformation of ring B rather than to packing effects.     

Polymeric Structure and Solid NMR Spectra of Cadmuim ( Ⅱ）Dialkyldithiophosphates(Alkyl=Propyl,Butyl,Isopropyl and Isobutyl)

By dropwise adding thio ligands to concentrated aqueous solutions of Cd(ClO₄)₂·6H₂O, polymeric complexes, Cd(II) O, O'‐dipropyldithiophosphate (1), O, O'‐dibutyl‐dithiophosphate (2), O, O'‐diisopropyl‐dithiophosphate (3) and O, O'‐diisobutyl‐dithiophosphate (4) were obtained. The structure of 4 was determined by X‐ray diffraction analysis, showing that the metal ion sits in distorted tetrahedral sulphur coordination sphere and that the eight‐membered bimetallic rings take the twist chair and boat conformations, alternately. Based on facts that the S(1)—Cd bond length [0.25099(12) nm] is shorter than the other S—Cd bond length [0.25399(12)—0.25701(18) nm] and that the S(1)‐involving angles [113.45(4)°—118.43(5)°] are systematically larger than the normal angles of a tetrahedron, the ligands are hypothesized to be erratically functionalized to Cd(II). To certify the steric nonequivalence of ligands, the compounds were investigated by solid ¹³C, ³¹P and ¹¹³Cd NMR spectroscopy.     

(24R)‐24,25‐Dihydroxycyclo­artan‐3‐one

In the title compound, C₃₀H₅₀O₃, the three six‐membered rings adopt chair, twist and twist‐boat conformations. The five‐membered ring is in a slightly distorted envelope conformation. The substituent on the five‐membered ring is in an extended conformation, with its two hydroxyl O atoms forming an intramolecular hydrogen bond. One of these O atoms also forms an intermolecular hydrogen bond with the oxy­gen of the carbonyl group in a neighbouring mol­ecule.     

Structural properties of five- and six-layered [3.3]metacyclophanes

We performed X-ray structural analyses of the five- and six-layered [3.3]metacyclophanes (MCPs) 1 and 2 and the six-layered [3.3]MCP tetraone 3. In the solid state, the MCP moieties of 1, 2, and 3 adopt different conformations from those of the free MCPs in solution. In the five-layered [3.3]MCP 1, all the [3.3]MCP moieties adopt anti (chair/boat) conformations. In the six-layered [3.3]MCP 2, two three-layered [3.3]MCPs are connected by a [3.3]MCP in the anti conformation with completely parallel benzene rings. In the six-layered [3.3]MCP tetraone 3, the outer [3.3]MCP moieties and diones adopt general syn and anti geometries, respectively. However, the inner [3.3]MCP moiety adopts an anti geometry. Based on density functional theory (DFT) calculations, the most stable conformers of 1, 2, and 3 are syn (chair/chair) in the [3.3]MCP moieties and anti (twist boat/twist boat) in the dione moieties.     

6β‐Azido‐7α‐hydroxy‐17‐oxo‐5α‐androstan‐3β‐yl acetate

In the title compound, C₂₁H₃₁N₃O₄, a potential inhibitor of aromatase, all rings are fused trans. Rings A, B and C have chair conformations which are slightly flattened. Ring D has a 14α‐envelope conformation. The steroid nucleus has a small twist, as shown by the C19—C10⋯C13—C18 torsion angle of 6.6 (2)°. Ab initio calculations of the equilibrium geometry of the mol­ecule reproduce this small twist, which appears to be due to the steric effect of the 6β‐azide substituent rather than to packing effects.     

6,6′‐Dimethoxygossypolone

6,6′‐Dimethoxygossypolone (systematic name: 7,7′‐dihydroxy‐5,5′‐diisopropyl‐6,6′‐dimethoxy‐3,3′‐dimethyl‐1,1′,4,4′‐tetraoxo‐2,2′‐binaphthalene‐8,8′‐dicarbaldehyde), C₃₂H₃₀O₁₀, is a dimeric molecule formed by oxidation of 6,6′‐dimethoxygossypol. When crystallized from acetone, 6,6′‐dimethoxygossypolone has monoclinic (P2₁/c) symmetry, and there are two molecules within the asymmetric unit. Of the four independent quinoid rings, three display flattened boat conformations and one displays a flattened chair/half‐chair conformation. The angles between the planes of the two bridged naphthoquinone structures are fairly acute, with values of about 68 and 69°. The structure has several intramolecular O—H...O and C—H...O hydrogen bonds and several weak intermolecular C—H...O hydrogen bonds, but no intermolecular O—H...O hydrogen bonds.     

An investigation of the molecular structure of cycloheptanone by gas phase electron diffraction

The electron diffraction data of cycloheptanone, collected at 371 K, can be explained using a model of partial pseudorotation, with the symmetrical twist—chair as the mean structure. Ther_g, r_α-structure is characterized by r(C-C) = 1.536 Å, r(C=O) = 1.219 Å, r(C-H) = 1.124 Å, xxxCC(sp²)C = 117.3°, xxx(CCC = 115.5° and xxx(HCH = 103.2°. Approximate values for the constants of the pseudorotation potential are included.     

Axial and Equatorial Dimethylamine Substitution on Phosphorus in the 1,3,2-Oxazaphosphorinane Ring System: Structures of 2-Dimethylamino-4-Phenyl-2H-1,3,2-Oxazaphosphorinane-2-Oxides

Single crystal x-ray structures of the diastereomeric 2-dimethylamino-4-phenyl-2H-1,3,2-oxazaphosphorinane-2-oxides, 5c and 6c, have been determined. The pair has been prepared in a straightforward manner by reaction of 3-amino-3-phenylpropanol with Mo₂P(O)Cl₂, and separated into pure forms by column chromatography. Crystal data of 5c: space group P2₁/n, a = 11.087(3), b = 6.087(6), c = 18.465(6)Å, β = 98.40(3)°, R = 0.035 for 1845 reflections. Crystal data of 6c: space group P2₁/n, a = 11.176(2), b = 6.893(2), c = 16.673(3)Å, β = 95.29(1)°, R = 0.037 for 1253 reflections. The fast-migrating 5c is cis (Ph and P = O group cis) with the configuration of 2RS, 4SR. The slow migrating 6c is trans with the configuration of 2RS, 4RS. In both structures the 1,3,2-oxazaphosphorinane rings are chair like with the P-end essentially flattened, The skeleton made up with 4-phenyl-1,3,2-oxazaphosphorinane is essentially the same. With a conformationally demanding 4-phenyl substituent, 5c has an axial Mc₂N whereas 6c has an equatorial Me₂N. For 6c, the exocyclic P-N bond has a partial double bond character the geometry about exocyclic N is planar. On the other hand, for 5c, the geometry about exocyclic N deviates considerably from planarity, the sum of the angles around N being 348.1°. In the crystalline state, the screw-related 5c molecules are hydrogen bonded whereas in the crystalline state, the centro-symmetrically related 6c molecules are paired-up by hydrogen bonds, both through the N-H and P = O system.     

4‐Deoxy‐4‐fluoro‐β‐d‐glucopyranose

4‐Deoxy‐4‐fluoro‐β‐d ‐glucopyranose, C₆H₁₁FO₅, (I), crystallizes from water at room temperature in a slightly distorted ⁴C₁ chair conformation. The observed chair distortion differs from that observed in β‐d ‐glucopyranose [Kouwijzer, van Eijck, Kooijman & Kroon (1995). Acta Cryst. B 51 , 209–220], (II), with the former skewed toward a B^C3,O5 (boat) conformer and the latter toward an ^O5TB_C2 (twist–boat) conformer, based on Cremer–Pople analysis. The exocyclic hydroxymethyl group conformations in (I) and (II) are similar; in both cases, the O—C—C—O torsion angle is ∼−60° (gg conformer). Intermolecular hydrogen bonding in the crystal structures of (I) and (II) is conserved in that identical patterns of donors and acceptors are observed for the exocyclic substituents and the ring O atom of each monosaccharide. Inspection of the crystal packing structures of (I) and (II) reveals an essentially identical packing configuration.     

2,2,4,4‐Tetramethyl‐1,5‐diphenyl‐6,7,8‐trioxa‐3‐thiabicyclo[3.2.1]­octane

The structure of the title ozonide, C₂₀H₂₂O₃S, produced without the use of ozone, has been defined at 123 (1) K. In the triclinic crystal, the mol­ecule has symmetry close to C_s, and its ozonide and 1,4‐oxa­thiane rings have envelope and chair conformations, respectively. The ozonide unit has an O—O bond length of 1.4721 (12) Å and a C—O—O—C torsion angle of ?1.45 (12)°.     

Pseudokobusine

The title compound, hetisan-6,11β,15β-triol, C₂₀H₂₇NO₃, is a hetisane-type diterpenoid alkaloid. It consists of six six-membered rings and two five-membered rings. The fused-ring system contains three chair, two boat, one distorted boat and two envelope conformations. Intramolecular and intermolecular hydrogen bonds are present between the O atoms, with O⃛O separations of 3.006 (3) and 2.743 (3) Å, as well as an O⃛N intermolecular interaction of 2.887 (3) Å.     

A Conformational Study on Silacyclohexane. Comparison of ab initio (HF,MP2), DFT,and Molecular Mechanics Calculations. Conformational Energy Surface of Silacyclohexane

The structures and relative energies for the basic conformations of silacyclohexane 1 have been calculated using HF, RI‐MP2, RI‐DFT and MM3 methods. All methods predict the chair form to be the dominant conformation and all of them predict structures which are in good agreement with experimental data. The conformational energy surface of 1 has been calculated using MM3. It is found that there are two symmetric lowest energy pathways for the chair‐to‐chair inversion. Each of them consists of two sofa‐like transition states, two twist forms with C₁ symmetry (twist‐C₁), two boat forms with Si in a gunnel position (C₁ symmetry), and one twist form with C₂ symmetry (twist‐C₂). All methods calculate the relative energy to increase in the order chair < twist‐C₂ < twist‐C₁ < boat. At the MP2 level of theory and using TZVP and TZVPP (Si atoms) basis sets the relative energies are calculated to be 3.76, 4.80, and 5.47 kcal mol^–1 for the twist‐C₂, twist‐C₁, and boat conformations, respectively. The energy barrier from the chair to the twisted conformations of 1 is found to be 6.6 and 5.7 kcal mol^–1 from MM3 and RI‐DFT calculations, respectively. The boat form with Si at the prow (C_s symmetry) does not correspond to a local minimum nor a saddle point on the MM3 energy surface, whereas a RI‐DFT optimization under C_s symmetry constraint resulted in a local minimum. In both cases its energy is above that of the chair‐to‐twist‐C₁ transition state, however, and it is clearly not a part of the chair‐to‐chair inversion.     

Origin of Spectrum Shifts of Benzophenone–Water Clusters: DFT Study

Structures and electronic excitation energies of the benzophenone–water (Bp–H₂O) and benzophenone–methanol (Bp–CH₃OH) complexes have been investigated by means of density functional theory calculations. The CAM-B3LYP/6-311++G(d,p) and higher level calculations were carried out for the system. The calculations indicate that free Bp has a nonplanar structure with twist angle of 54.2° for two phenyl rings (referred to as ?). In the case of the Bp–H₂O system, the twist angle of the phenyl rings and structure of the Bp skeleton were hardly changed by hydration (? = 55.1° for Bp–H₂O). However, the excitation energies of Bp were drastically changed by this solvation. The time-dependent density functional calculations show that the n–π* transition (S₁ state) is blue-shifted by the solvation, whereas two π–π* transitions (S₂ and S₃) were red-shifted. The origin of the specific spectral shifts is discussed on the basis of the theoretical results.     

Crystal structure of koraiol — A sesquiterpene alcohol with a new type of carbon skeleton from the oleoresin ofPinus koraiensis

An x-ray structural investigation has been made of a new sesquiterpene alcohol — koraiol — in the form of its complex with pyridine (2:1). The cyclobutane rings are nonplanar and the foldings of rings A and B amount to 17 and 31°, respectively. The seven-membered ring has the chair form.     

A dimer of α‐ and β‐dihydro­arte­misinin: bis­(3,6,9‐trimethyl‐3,12‐epidioxy‐3,4,5,5a,6,7,8,8a,9,10‐deca­hydro‐12H‐pyrano[4,3‐j][1,2]­benzo­dioxepin‐10‐yl) ether

The title compound, C₃₀H₄₆O₉, prepared from a mixture of α‐ and β‐dihydro­artemisinin, has α‐ and β‐arteether moieties linked via an –O– bridge, so that the mol­ecule is asymmetric about the bridge. The endoperoxide bridges of the parent compounds have been retained in each half of the ether‐bridged dimer. The rings exhibit chair and twist–boat conformations.