Homogeneous non-competitive bioaffinity assay based on fluorescence resonance energy transfer

A homogeneous non-competitive assay principle for measurement of small analytes based on quenching of fluorescence is described. Fluorescence resonance energy transfer (FRET) occurs between the donor, intrinsically fluorescent europium(III)-chelate conjugated to streptavidin, and the acceptor, quencher dye conjugated to biotin derivative when the biotin-quencher is bound to Eu-streptavidin. Fluorescence can be measured only from those streptavidins that are bound to biotin of the sample, while the fluorescence of the streptavidins that are not occupied by biotin are quenched by quencher-biotin conjugates. The quenching efficiencies of the non-fluorescent quencher dyes were over 95% and one dye molecule was able to quench the fluorescence of more than one europium(III)-chelate. This, however, together with the quadrovalent nature of streptavidin limited the measurable range of the assay to 0.2-2 nmol L⁻¹. In this study we demonstrated that FRET could be used to design a non-competitive homogeneous assay for a small analyte resulting in equal performance with competitive heterogeneous assay.     

Label-free detection of adenosine based on fluorescence resonance energy transfer between fluorescent silica nanoparticles and unmodified gold nanoparticles

A sensitive and convenient strategy was developed for label-free assay of adenosine. The strategy adapted the fluorescence resonance energy transfer property between Rhodamine B doped fluorescent silica nanoparticles (SiNPs) and gold nanoparticles (AuNPs) to generate signal. The different affinities of AuNPs toward the unfolded and folded aptamers were employed for the signal transfer in the system. In the presence of adenosine, the split aptamer fragments react with adenosine to form a structured complex. The folded aptamer cannot be adsorbed on the surface of AuNPs, which induces the aggregation of AuNPs under high ionic concentration conditions, and the aggregation of AuNPs leads to the decrease of the quenching ability. Therefore, the fluorescence intensity of Rhodamine B doped fluorescent SiNPs increased along with the concentration of adenosine. Because of the highly specific recognition ability of the aptamer toward adenosine and the strong quenching ability of AuNPs, the proposed strategy demonstrated good selectivity and high sensitivity for the detection of adenosine. Under the optimum conditions in the experiments, a linear range from 98 nM to 100 μM was obtained with a detection limit of 45 nM. As this strategy is convenient, practical and sensitive, it will provide a promising potential for label-free aptamer-based protein detection.     

Ethylenediaminetetraacetic Acid Functionalized Gold Nanoparticles for Sensitive Colorimetric Detection of Chromium(III)

A cost‐effective and sensitive colorimetric method was described for the determination of chromium(III) ion (Cr³⁺) by using ethylenediaminetetraacetic acid functionalized gold nanoparticles (EDTA‐AuNPs) as a probe. The stable and dispersed EDTA‐AuNPs were prepared by reducing HAuCl4 with sodium borohydride in presence of EDTA as a capping agent. Upon the addition of Cr³⁺, the colour of EDTA‐AuNPs solution changed from red to violet, which was in response to the surface plasmon absorption of dispersed and aggregated EDTA‐AuNPs. The procedure allowed the determination of Cr³⁺ in the range of 0.1–1.0 mol/L. The limit of detection for Cr³⁺ was 0.08 mol/L. The relative standard deviation was 2.5 % for eight repeated measurements of 0.6 mol/L Cr³⁺ solution. The method was applied to the determination of Cr³⁺ in water samples.     

A competitive displacement assay with quantum dots as fluorescence resonance energy transfer donors

The unique optoelectronic properties of semiconductor quantum dots (QDs) make them well-suited as fluorescent bioprobes for use in various biological applications. Modification of CdSe/ZnS QDs with biologically relevant molecules provides for multipotent probes that can be used for cellular labeling, bioassays, and localized optical interrogation by means of fluorescence resonance energy transfer (FRET). Herein, we demonstrate the use of red-emitting streptavidin-coated QDs (QD₆₀₅) as donors in FRET to introduce a competitive displacement-based assay for the detection of oligonucleotides. Various QD–DNA bioconjugates featuring 25-mer probe sequences diagnostic of Hsp23 were prepared. The single-stranded oligonucleotide probes were hybridized to dye-labeled (Alexa Fluor 647) reporter sequences, which were provided for a FRET-sensitized emission signal due to proximity of the QD and dye. The dye-labeled sequence was designed to be partially complementary and include base-pair mismatches to facilitate displacement by a more energetically favorable, fully complementary recognition motif embedded within a 98-mer displacer sequence. Overall, this study demonstrates proof-of-concept at the nM level for competitive displacement hybridization assays in vitro by reduction of fluorescence intensity that directly correlates to the presence of oligonucleotides of interest. This work demonstrates an analytical method that could potentially be implemented for monitoring of intracellular gene expression in the future.     

Column chromatographic speciation of chromium for Cr(VI) and several species of Cr(III)

Summary Chromium can be present in aqueous solution as Cr(VI) or in monomeric, dimeric, trimeric and higher polymeric forms of Cr(III). Many monomeric forms of Cr(III) are possible, with the water molecules of Cr(H₂O) ₆ ³⁺ substituted by anionic or neutral species. This proliferation of Cr(III) species makes the complete speciation of chromium a continuing challenge to the analyst. A simple and effective cation exchange procedure for the separation of various of these species uses a small glass column containing 1 mL of pre-treated cation exchange resin (Na⁺ form). Stepwise elution with solutions of perchloric acid, Ca²⁺ (pH=2) and La³⁺ (pH=2) separates Cr(VI) and seven Cr(III) species from CrX₃ to tetramer. Radiometric (Cr-51), spectrophotometric and other detection methods can be employed; the use of radiochromium gives the lowest detection limit.     

Synthesis and characterization of anthracene-clustering dendrimers: observation of fluorescence resonance energy transfer in the multichromophoric system

A series of anthracene-clustering dendrimers bearing various aliphatic substituents at the terminal positions were synthesized using a direct coupling strategy. A remarkable effect of the side chains was imparted to chemical properties of the dendrimers such as drastically increased solubility. Although the multibranched anthracene arrays in the dendritic architectures exhibited no cooperativity in terms of the absorption feature and behaved as single chromophoric systems, investigations focusing on fluorescence properties revealed that a type of cooperativity was present as expressed in the reduced quantum yields of fluorescence. An alternative approach utilizing time-resolved fluorescence decay measurements clearly demonstrated that the most reasonable mechanism of the cooperative action should involve two discernible channels of intramolecular fluorescence resonance energy transfer (FRET) occurring from one chromophore to the others within and across junctions of the branching units.     

A paper-based resonance energy transfer nucleic acid hybridization assay using upconversion nanoparticles as donors and quantum dots as acceptors

Monodisperse aqueous upconverting nanoparticles (UCNPs) were covalently immobilized on aldehyde modified cellulose paper via reduction amination to develop a luminescence resonance energy transfer (LRET)-based nucleic acid hybridization assay. This first account of covalent immobilization of UCNPs on paper for a bioassay reports an optically responsive method that is sensitive, reproducible and robust. The immobilized UCNPs were decorated with oligonucleotide probes to capture HPRT1 housekeeping gene fragments, which in turn brought reporter conjugated quantum dots (QDs) in close proximity to the UCNPs for LRET. This sandwich assay could detect unlabeled oligonucleotide target, and had a limit of detection of 13 fmol and a dynamic range spanning nearly 3 orders of magnitude. The use of QDs, which are excellent LRET acceptors, demonstrated improved sensitivity, limit of detection, dynamic range and selectivity compared to similar assays that have used molecular fluorophores as acceptors. The selectivity of the assay was attributed to the decoration of the QDs with polyethylene glycol to eliminate non-specific adsorption. The kinetics of hybridization were determined to be diffusion limited and full signal development occurred within 3 min.     

Lineal DNA logic gate for microRNA diagnostics with strand displacement and fluorescence resonance energy transfer

Designing molecular logic gates to operate programmably for molecular diagnostics in molecular computing still remains challenging. Here, we designed a novel linear DNA logic gates for microRNA analysis based on strand displacement and fluorescence resonance energy transfer (FRET). Two labeled strands closed each other produce to FRET through hybridization with a complementary strand to form a basic work unit of logic gate. Two indicators of heart failure (microRNA-195 and microRNA-21) were selected as the logic inputs and the fluorescence mode was used as the logic output. We have demonstrated that the molecular logic gate mechanism worked well with the construction of YES and AND gates.     

Novel,highly selective detection of Cr(III) in aqueous solution based on a gold nanoparticles colorimetric assay and its application for determining Cr(VI)

A simple, rapid, sensitive and field-portable colorimetric technique for the determination of Cr(III) in aqueous solution based on an aggregation-induced color transition of gold nanoparticles (AuNPs) has been developed. AuNPs were first functionalized with a dithiocarbamate-modified N-benzyl-4-(pyridin-4-ylmethyl)aniline ligand (BP-DTC). Chelation of Cr(III) by several of these ligands, bound to different nanoparticles, led to nanoparticle aggregation in solution. This gave rise to a color change from wine-red to blue that was discernible by the naked eye and an easily measurable alteration in the extinction spectrum of the particles. The method could be used to determine Cr(III) with a detection limit of 31 ppb. Furthermore, selective detection of trace Cr(III) in aqueous solution in the presence of 12 other transition metal ions has been achieved. Toward the goal of practical applications, the sensor has been further evaluated with a view to monitoring Cr(III) in nutritional supplements and the blood of diabetes patients and also applied in the indirect determination of Cr(VI) in waste water.     

Adsorption Studies of Cr(III) & Cr(VI) on Lead Sulphide,Copper Sulphide & Zinc Sulphide-Determination Cr(III) in the Presence of Cr(VI)

Abstract

The adsorption studies of Cr(VI) in presence of Cr(III) on the sulphide of Lead, Zinc and Copper has been studied. It has been found that in case of lead sulphide 100% adsorption of Cr(VI) took place at pH 4.0 and of Cr(III) at pH 7.0. While in case of zinc sulphide the 100% adsorption of Cr(VI) took place at pH 4.5 and of Cr(III) at pH 6.5. In case of copper sulphide 100% adsorption of Cr(VI) took place at pH 5.0 and of Cr(III) at pH 7.0. This difference in adsorption at different pH values forms the basis for the determination of these ions. The method is accurate.     

Diamond paste-based electrodes for determination of Cr(III) in pharmaceutical compounds

A new class of monocrystalline diamond paste-based electrodes is proposed for the determination of chromium(III) at trace levels in vitamins. Three types of monocrystalline diamond—natural diamond 1 (natural diamond), synthetic diamond 50 (synthetic-1), and synthetic diamond 1 (synthetic-2)—were used for electrode construction. The linear concentration ranges are between 10^–10 and 10^–8; 10^–9 and 10^–7, and 10^–10 to 10^–8 mol L^–1, with limits of detection of 10^–12, 10^–12, and 10^–11 mol L^–1, when natural diamond, synthetic-1, and synthetic-2, respectively, are used as electrode materials. For electrodes based on natural diamond and synthetic-1 it was found that Cr(III) yields a peak at about +0.275±0.015 V (vs. Ag/AgCl) within a predetermined positive potential range situated between +0.4 and +0.2 V, while for the electrode based on synthetic-2 the peaks are found at +0.300±0.015 V (vs. Ag/AgCl). The proposed method is reliable for the determination of chromium(III) at trace levels in two vitamin tablets (RSD<0.2%).     

Polyorganosiloxane-europium (III) host-guest inclusion system and its energy transfer luminescence

The Eu(III) ion, as a luminescent probe, is incorporated into a novel nanotube-contained polyorganosiloxane (POS), which is obtained by coupling of ladderlike polyvinylsilsesquioxane (Vi-T) with tetramethyldisiloxane (H-MM) via hydrosilylation, to form POS-Eu(III) composite. The results from fluorescent study demonstrate that the composite is actually a host-guest clathrate which includes the Eu(III) ions in the tubelike cavity of POS and moreover, the supramolecular clathrate exhibits an obvious energy transfer process which converts the UV light absorbed by POS into the visible light generated from the Eu(III) luminescence. Molecular simulation also gives support to the formation of such a clathrate and thus results in energy transfer process. Project supponed by the Research Foundation of Molecular Science Center and Director of Institute of Chemistry, the Chinese Academy of Sciences, and Foundation of Organic Solid Laboratory, the Chinese Academy of Sciences.     

Simultaneous determination of Cr(III) and Cr(VI) in water by reversed phase HPLC,after chelating with sodium diethyldithiocarbamate

Summary A method for simultaneous determination of Cr(III) and Cr(VI), using sodium diethyldithiocarbamate as chelating agent is given. At room temperature and pH 5.8 sodium diethyldithiocarbamate reacts with both Cr(III) and Cr(VI). Examination of this reaction by reversed phase high-performance liquid chromatography, makes it possible to correct for the interference between Cr(III) and Cr(VI) when determining the amount of Cr(III) present in the solution.     

Construction of triblock copolymer-gold nanorod composites for fluorescence resonance energy transfer via pH-sensitive allosteric

To explore the effects of microenvironmental adjustments on fluorescence, a pH-sensitive nanocomposite system based on fluorescence resonance energy transfer (FRET) was constructed. The model system included a modified triblock copolymer (polyhistidine-b-polyethylene glycol-b-polycaprolactone) and gold nanoparticles. A near-infrared dye was used as the donor, and spectrally matched gold nanorods, attached after C-terminus modification with α-lipoic acid, were used as the receptor to realize control of the FRET effect over the fluorescence intensity for two polymer configurational changes (i.e., “folded” and “stretched” states) in response to pH. After synthesis and characterization, we investigated the self-assembly behavior of the system. Analysis by quartz crystal microbalance revealed the pH sensitivity of the polymer, which exhibited “folding” and “stretching” states with changes in pH, providing a structural basis for the FRET effect. Fluorescence spectrophotometry investigations also revealed the regulatory impact of the assembled system on fluorescence.     

Materials for fluorescence resonance energy transfer analysis: beyond traditional donor-acceptor combinations

The use of F?rster or fluorescence resonance energy transfer (FRET) as a spectroscopic technique has been in practice for over 50 years. A search of ISI Web of Science with just the acronym "FRET" returns more than 2300 citations from various areas such as structural elucidation of biological molecules and their interactions, in vitro assays, in vivo monitoring in cellular research, nucleic acid analysis, signal transduction, light harvesting and metallic nanomaterials. The advent of new classes of fluorophores including nanocrystals, nanoparticles, polymers, and genetically encoded proteins, in conjunction with ever more sophisticated equipment, has been vital in this development. This review gives a critical overview of the major classes of fluorophore materials that may act as donor, acceptor, or both in a FRET configuration. We focus in particular on the benefits and limitations of these materials and their combinations, as well as the available methods of bioconjugation.     

Fluorescence resonance energy transfer in doubly-quantum dot labeled IgG system

The mouse immunoglobulin G (mouse IgG) as a kind of bio-molecule was labeled with two different luminescent colloidal semiconductor quantum dots (QDs), green-emitting CdTe quantum dots and red-emitting CdTe quantum dots in this work. As a result of the fluorescence resonance energy transfer (FRET) between the two different sizes nanoparticles with mouse IgG as the binding bridge, a significant enhancement of the emission of the red-emitting CdTe quantum dots and the corresponding quenching of the emission of green-emitting CdTe quantum dots were observed. The relationship between the concentration of the mouse immunoglobulin G and the fluorescence intensity ratio (I_a/I_d) of acceptors and donors was studied also. Under optimal conditions, the calibration graph is linear over the range of 0.1–20.0 mg/L mouse IgG.     

On-chip multiplexed solid-phase nucleic acid hybridization assay using spatial profiles of immobilized quantum dots and fluorescence resonance energy transfer

A microfluidic based solid-phase assay for the multiplexed detection of nucleic acid hybridization using quantum dot (QD) mediated fluorescence resonance energy transfer (FRET) is described herein. The glass surface of hybrid glass-polydimethylsiloxane (PDMS) microfluidic channels was chemically modified to assemble the biorecognition interface. Multiplexing was demonstrated using a detection system that was comprised of two colors of immobilized semi-conductor QDs and two different oligonucleotide probe sequences. Green-emitting and red-emitting QDs were paired with Cy3 and Alexa Fluor 647 (A647) labeled oligonucleotides, respectively. The QDs served as energy donors for the transduction of dye labeled oligonucleotide targets. The in-channel assembly of the biorecognition interface and the subsequent introduction of oligonucleotide targets was accomplished within minutes using a combination of electroosmotic flow and electrophoretic force. The concurrent quantification of femtomole quantities of two target sequences was possible by measuring the spatial coverage of FRET sensitized emission along the length of the channel. In previous reports, multiplexed QD-FRET hybridization assays that employed a ratiometric method for quantification had challenges associated with lower analytical sensitivity arising from both donor and acceptor dilution that resulted in reduced energy transfer pathways as compared to single-color hybridization assays. Herein, a spatial method for quantification that is based on in-channel QD-FRET profiles provided higher analytical sensitivity in the multiplexed assay format as compared to single-color hybridization assays. The selectivity of the multiplexed hybridization assays was demonstrated by discrimination between a fully-complementary sequence and a 3 base pair sequence at a contrast ratio of 8 to 1.     

A new efficient adsorbent in the preconcentration studies of the Cr(III) and Fe(III) ions

In this study, the imine‐graphene hybrid material (HM) was used as an adsorbent for removal of Fe(III) and Cr(III) metal ions from the drinking waters. The adsorbent material (HM) was prepared at three steps. At the first step, the graphite was oxidized by Hummer's method for preparation of graphene oxide (GO), in the second step, the silanization derivative (GO‐APTES) was obtained from the reaction of the 3‐(trimethoxysilyl) propylamine and GO. In the final step, the hybrid material (HM) was synthesized from the reaction of the 3,5‐diiodosalicylaldehyde and GO‐APTES. The chemical structures of three materials GO, GO‐APTES and HB were characterized by using the FT‐IR, XRD, EDX, SEM, TEM and UV‐vis methods. Thermal properties of the materials GO, GO‐APTES and HB were investigated by TGA/DTA methods in the 25–1000°C temperature range. Adsorption and desorption studies of the hybrid material toward Fe(III) and Cr(III) metal ions were investigated using the Batch method. The effect of pH, contact time, temperature, concentration on the adsorption properties of the hybrid material were investigated by ICP‐OES. The Fe(III) and Cr(III) ions have the maximum adsorption at the pH 7. The adsorption capacity decreases with the increase in pH values because above pH 9 the adsorption decreases due to the precipitation of metal hydroxide.