Naked-eye detection of F and AcO ions by Schiff base receptor

A Schiff base 2, composed with o-phenylenediamine and 5-nitro-salicylaldehyde have been synthesized as an anion receptor. It consists with conjugated imine, phenolic -OH and electron withdrawing substituent nitro (-NO₂) group. Receptor 2 can recognize selectively biologically important F⁻ and AcO⁻ ions. The recognition properties have been investigated by naked-eye color change (colorless to yellow), followed by UV-vis spectral changes. Predicted stoichiometries of the complexes between receptor 2 and anions based on density functional theory (DFT) level calculations, corroborates well with experimental findings.     

Fabrication of novel coated pyrolytic graphite electrodes for the selective nano-level monitoring of Cd ions in biological and environmental samples using polymeric membrane of newly synthesized macrocycle

Novel 5-amino-1,3,4-thiadiazole-2-thiol unit based macrocyclic ionophore 5,11,17-trithia-1,3,7,9,13,15,19,20,21-nonaazatetracyclo[14.2.1.1^4,7.1^10,13]henicosa-4(20),10(21),16(19)-triene-6,12,18-trithione (M₁), was synthesized and characterized. Preliminary studies on M₁ have showed that it has more the affinity toward Cd²⁺ ion. Thus, the macrocyclic ionophore (M₁) was used as electroactive material in the fabrication of PVC-membrane electrodes such as polymeric membrane electrode (PME), coated graphite electrode (CGE) and coated pyrolytic graphite electrode (CPGE) were prepared and its performance characteristic were compared with. The electroanalytical studies performed on PME, CGE and CPGE revealed that CPGE having membrane composition M₁:PVC:1-CN:NaTPB in the ratio of 7:37:54:2 exhibits the best potentiometric characteristics in terms of detection limit of 7.58 × 10⁻⁹ mol L⁻¹, Nernstian slope of 29.6 mV decade⁻¹ of activity. The sensor was found to be independent of pH in the range 2.5–8.5. The sensor showed a fast response time of 10 s and could be used over a period of 4 months without any significant divergence in its potentiometric characteristics. The sensor has been employed for monitoring of the Cd²⁺ ion in real samples and also used as an indicator electrode in the potentiometric titration of Cd²⁺ ion with EDTA.     

Synthesis, characterization and DNA-binding and DNA-photocleavage studies of two Ru(II) complexes containing two main ligands and one ancillary ligand

DNA-binding and DNA-photocleavage properties of two Ru(II) complexes, [Ru(L¹)(dppz)₂](PF₆)₄ (1) and [Ru(L²)(dppz)₂](PF₆)₄ (2) (L¹ = 5,5′-di(1-(triethylammonio)methyl)-2,2′-dipyridyl cation; L² = 5,5′-di(1-(tributylammonio)methyl)-2,2′-dipyridyl cation; dppz = dipyrido[3,2-a:2′,3′-c]phenazine, have been investigated. Experimental results show that the DNA-binding affinity of complex 1 is greater than that of 2, both complexes emit luminescence in aqueous solution, either alone or in the presence of DNA, complex 1 can bind to DNA in an intercalative mode while 2 most likely interacts with DNA in a partial intercalation fashion, and complex 2 serves as a better candidate for enantioselective binding to CT-DNA compared with 1. Moreover, complex 1 reveals higher efficient DNA cleavage activity than 2, during which supercoiled DNA is converted to nicked DNA with both complexes. Theoretical calculations for the two complexes have been carried out applying the density functional theory (DFT) method at the level of the B3LYP/LanL2DZ basis set. The calculated results can reasonably explain the obtained experimental trends in the DNA-binding affinities and binding constants (K_b) of these complexes.     

PbxSr1-xTiO3的电子结构

在广义梯度近似下, 采用基于密度泛函理论框架下的超软赝势平面波和虚拟晶体近似方法, 计算了不同Pb/Sr摩尔比的PbxSr1-xTiO3(PST)固溶体的精细结构, 确定了A位离子在铁电相的平衡构型. 利用虚拟晶体近似方法分别计算了摩尔比x为0.6、0.7的PbxSr1-xTiO3精细结构. 结果表明, 在钛酸锶铅固溶体中, 随着Pb的摩尔比增大, 晶胞体积膨胀, c/a值增大. 当0.6相似文献   

Halogen Bonding in Haspin-Halogenated Tubercidin Complexes: Molecular Dynamics and Quantum Chemical Calculations

Haspin, an atypical serine/threonine protein kinase, is a potential target for cancer therapy. 5-iodotubercidin (5-iTU), an adenosine derivative, has been identified as a potent Haspin inhibitor in vitro. In this paper, quantum chemical calculations and molecular dynamics (MD) simulations were employed to identify and quantitatively confirm the presence of halogen bonding (XB), specifically halogen∙∙∙π (aromatic) interaction between halogenated tubercidin ligands with Haspin. Consistent with previous theoretical finding, the site specificity of the XB binding over the ortho-carbon is identified in all cases. A systematic increase of the interaction energy down Group 17, based on both quantum chemical and MD results, supports the important role of halogen bonding in this series of inhibitors. The observed trend is consistent with the experimental observation of the trend of activity within the halogenated tubercidin ligands (F < Cl < Br < I). Furthermore, non-covalent interaction (NCI) plots show that cooperative non-covalent interactions, namely, hydrogen and halogen bonds, contribute to the binding of tubercidin ligands toward Haspin. The understanding of the role of halogen bonding interaction in the ligand–protein complexes may shed light on rational design of potent ligands in the future.     

Synthesis and electronic structures of D2h-symmetry tetrabenzoporphyrins

A novel low-symmetry tetrabenzoporphine with D_2h symmetry (1) and its zinc complex (2) were prepared via mixed condensation reaction of 5,6-dimethyl phthalimide and 4,5,6,7-tetraphenyl phthalimide with sodium acetate in the presence of zinc acetate. The zinc complex 2 exhibited a split Q band at 640 and 623 nm and a single Soret band at 435 nm. The absorption spectra of 1 and 2 were calculated and analyzed using Hartree-Fock theory based on INDO/S Hamiltonian.     

Some contribution to W(VI)-peroxo-chemistry: Synthesis,spectroscopic characterization,reactivity and DFT studies

Synthesis of white microcrystalline oxodiperoxotungstate(VI) complexes, K[WO(O₂)₂(L)(H₂O)]·H₂O, (L ?= ?salicylate, 5-chlorosalicylate, 4-hydroxybenzoate) have been achieved from reaction of Na₂WO₄·2H₂O with 30% H₂O₂ and the respective hetero-ligands at pH Ca. 7–7.5 in aqueous medium. The newly synthesized compounds were comprehensively characterized by elemental analyses, spectral studies, room temperature magnetic moment measurements and mass spectrometric studies. Infrared spectra suggest that, peroxo groups are bonded to the WO⁺⁴ center in a triangular bidentate (C_2v) fashion and the hetero-ligands benzene-core hydroxycarboxylic acids viz. salicylic acid, 5-chlorosalicylic acid, 4-hydroxybenzoic acid in anoinic form are coordinated in monodentate manner. Compounds are fairly stable in aqueous solution for sufficient period of time. The results of mass spectrometric analysis lend support to the molecular composition of the complexes ascertained on the basis of elemental analyses and spectroscopic studies. Compound potassium(aquo)(5-chlorosalicylato)oxodiperoxotungstate(VI)monohydrate, K[WO(O₂)₂(5-chlorosalicylate)(H₂O)]·H₂O, act as an oxidant of bromide ion in aqueous phase bromination of chosen organic substrates to their corresponding bromo organics. Density Functional Theory (TD-DFT) calculations were performed on the synthesized complexes substantiated the experimentally obtained results. The TD-DFT optimized structures are in excellent agreement with the results of elemental analyses, spectral as well as mass spectrometric data.     

Magnetic properties of single crystal alpha-benzoin oxime: An EPR study

The electron paramagnetic resonance (EPR) spectra of gamma irradiated single crystals of alpha-benzoinoxime (ABO) have been examined between 120 and 440 K. Considering the dependence on temperature and the orientation of the spectra of single crystals in the magnetic field, we identified two different radicals formed in irradiated ABO single crystals. To theoretically determine the types of radicals, the most stable structure of ABO was obtained by molecular mechanic and B3LYP/6-31G(d,p) calculations. Four possible radicals were modeled and EPR parameters were calculated for the modeled radicals using the B3LYP method and the TZVP basis set. Calculated values of two modeled radicals were in strong agreement with experimental EPR parameters determined from the spectra. Additional simulated spectra of the modeled radicals, where calculated hyperfine coupling constants were used as starting points for simulations, were well matched with experimental spectra.     

Magnetic exchange behavior of a long-range Cu system through the diamagnetic Cu2 unit bridge: A DFT study

The mechanism of magnetic exchange interaction in an interesting Cu^II coordination polymer with the Cu^I₂X₂ (X = I or Br) moiety bridge is investigated by the calculations based on density functional theory combined with the broken-symmetry approach (DFT-BS). Surprisingly, different from the experiment results, the calculations reveal that the complex between the magnetic Cu^II centers has a fairly weak antiferromagnetic interaction for the long distance (∼10 Å). The analyses show of the molecular orbitals and the spin density distribution favor the very weak antiferromagnetic coupling interactions of the systems.     

Structural and Theoretical Studies of a New CuI-CuI Complex Bearing Bulky Unsymmetrical Benzamidinate Ligand

Density functional theory(DFT) calculations unambiguously verify that there is little or no direct metal-metal bonding in the dinuclear copper(I) benzamidinate complex [Cu₂(L^RR')₂](2){L^RR'=[PhC(NR)(NR')]^-(R= 2,6-ⁱPr₂C₆H₃, R'=SiMe₃)} with a short Cu-Cu distance[0.24454(4) nm].     

Zinc(II) and Mercury(II) Complexes of Pyrazole‐Based NNN‐Type Ligands: Syntheses,X‐ray Structures,Thermal Analyses and DFT Studies

Monomeric zinc(II) and mercury(II) complexes containing tripodal nitrogen donor ligand 2,6‐bis(3,4,5‐trimethyl‐N‐pyrazolyl)pyridine (btmpp) were synthesized, and characterized by elemental and spectroscopic (IR, UV/Vis) analyses, TG‐DTA and single‐crystal X‐ray diffraction studies. X‐ray analyses of the complexes [Zn(btmpp)Cl₂] ( 2 ) and [Hg(btmpp)(SCN)₂] ( 3 ) showed that both structures crystallize in space group P2₁/c with a = 7.9722(6), b = 18.3084(13), c = 13.3117(9) Å and Z = 4 for 2 and a = 8.7830(3), b = 21.1489(7), c = 12.0682(4) Å and Z = 4 for 3 . Both monomeric units contain pentacoordinate metal ions in distorted square‐pyramidal arrangement. The structures of complexes 2 and 3 were also computed with DFT methods at B3LYP/LanL2DZ level and are in good agreement with the experimental values obtained from X‐ray analysis. The NPa charge distributions, HOMO–LUMO gaps, and dipole moments for 1 , 2 , and 3 were also reported. Natural bond orbital analyses were performed to reveal local charges and charge transfers in 1 , 2 , and 3 .     

Synthesis,characterization and superoxide dismutase activity of some octahedral nickel(II) complexes

Four new mixed ligand nickel(II) complexes viz., [Ni(tren)(phen)](ClO₄)₂ (1), [Ni(tren)(bipy)](ClO₄)₂ (2), [Ni(SAA)(PMDT)] · 2H₂O (3) and [Ni(SAA)(TPTZ)] (4) (tren = tris(2-aminoethylamine), phen = 1,10-phenanthroline, bipy = 2,2′-bipyridine, SAA = salicylidene anthranilic acid, PMDT = N,N,N′,N″,N″-pentamethyldiethylenetriamine, TPTZ = 2,4,6-tri(2-pyridyl)-1,3,5-triazine) have been synthesized and characterized by means of elemental analysis, spectroscopic, magnetic susceptibility and cyclic voltammetric measurements. Single crystal X-ray analysis of [Ni(tren)(phen)](ClO₄)₂ (1) and [Ni(SAA)(PMDT)] · 2H₂O (3) has revealed the presence of a distorted octahedral geometry. Superoxide dismutase activity of these complexes has also been measured.     

Synthesis,characterization and in vitro biological assays of copper(II) and nickel(II) complexes with furan‐­2­‐carboxylic acid hydrazide

Two transition metal complexes, [Cu(FH)₃]⋅2Cl⋅2H₂O and [Ni(FH)₃]⋅2Cl⋅2H₂O, were synthesized from the reactions of furan‐2‐carboxylic acid hydrazide with CuCl₂⋅2H₂O and NiCl₂⋅6H₂O. The synthesized complexes were characterized using analytical and various spectral techniques. The structures of the complexes were determined using single‐crystal X‐ray diffraction. The interactions of the complexes with calf thymus DNA (CT‐DNA) were studied using absorption, fluorescence, cyclic voltammetric and viscosity measurements. The experimental results showed that the complexes could interact with CT‐DNA through intercalation. A gel electrophoresis assay demonstrated the ability of the complexes to cleave pBR322 DNA. The binding interaction of the complexes with bovine serum albumin was investigated using a fluorescence spectroscopic method. The radical scavenging ability, assessed using a series of antioxidant assays involving 2,2‐diphenyl‐2‐picrylhydrazyl radical, hydroxyl radical and nitric oxide radical, showed that the complexes possess significant radical scavenging properties. Further, the in vitro cytotoxic effect of the complexes examined on cancerous cell lines, such as human cervical cancer cells (HeLa) and human breast cancer cell line (MCF‐7), showed that the complexes exhibit significant anticancer activity.     

Spectroscopic and structural characterization of Na2[(VO)2(ttha)]·8H2O (ttha = triethylenetetraamine-N,N,N′,N″,N′″,N′″-hexaacetate): Interpreting the results with density functional theory

Na₂[(V^IVO)₂(ttha)]·8 H₂O (ttha = triethylenetetraamine–N,N,N′,N″,N′″,N′″–hexaacetate ion), prepared by treating [VO(H₂O)₅][(VO)₂(ttha)]·4 H₂O with Na₆(ttha), has been characterized by single crystal X-ray diffraction, infrared spectroscopy, UV–Vis absorption spectroscopy, electron spin resonance spectroscopy, and modeled by density functional theory (DFT). The X-ray structure revealed a distorted octahedral geometry around each vanadium center. The electronic absorption spectrum of [(VO)₂(ttha)]²⁻ (aq) features absorptions at ca. 200 nm (ε > 13900 L mol⁻¹ cm⁻¹), 255 nm (ε = 3480 L mol⁻¹ cm⁻¹), 586 nm (ε = 33 L mol⁻¹ cm⁻¹), and 770 nm (ε = 38 L mol⁻¹ cm⁻¹). The time-dependent density functional theory (TDDFT) calculated electronic absorption spectrum was remarkably similar to the actual spectrum, and TDDFT predicts absorption peaks at 297, 330, 458, 656, and 798 nm. TDDFT assigned the peak at 798 nm to be the α spin HOMO → LUMO transition. Hence, the peak at 770 nm in the actual spectrum is most likely the α spin HOMO → LUMO transition. Moreover, the TDDFT calculations revealed that the α spin HOMO and LUMO are partly comprised of d orbitals on both vanadium centers, and the first derivative electron spin resonance spectrum also suggests that the two unpaired electrons in [(VO)₂(ttha)]²⁻ are localized near the vanadium centers.     

ZnO:HCl single crystals: Thermodynamic analysis of CVT system,feature of growth and characterization

The full thermodynamic analysis of using HCl as a chemical vapor transport (CVT) agent (TA) for ZnO single crystals growth in closed growth chambers, including 16 chemical species, is carried out for wide temperature and loaded TA pressure ranges. The influence of the growth temperature, of the TA density and of the undercooling on the rate of ZnO mass transport was investigated theoretically and experimentally. It is shown that the mass transport is diffusion-limited at about 1050 °C, and it is limited by kinetics of the CVT reaction at lower temperatures. It is experimentally shown that using HCl favors obtaining void-free n-ZnO crystals with controllable electrical parameters, it reduces the effect of adhesiveness to the walls of the growth chamber. The characterization by the photoluminescence spectra, the transmission spectra and the electrical properties in the wide temperature range allowed analyzing energy spectra of Cl-containing stable defects in ZnO and electrical activity of Cl donors. Some methods of activation energy correction for Cl-containing centers are discussed.     

Synthesis of two new thioesters bearing ferrocene: Vibrational characterization and ab initio calculations. X-ray crystal structure of S-(2-methoxyphenyl)ferrocenecarbothioate

Structural and conformational properties of S-benzyl ferrocenecarbothioate (I) and S-(2-methoxyphenyl) ferrocenecarbothioate (II) are analyzed using data obtained from X-ray diffraction, vibrational data and theoretical calculations. According to chemical quantum calculations, the synperiplanar and antiperiplanar forms are found as the first and second more stable conformations, respectively, for the title compounds. The geometric parameters and normal modes of vibration were calculated using a density functional theory method (B3LYP) and the 6-31+G∗∗ basis set for all atoms except for iron. For this atom the calculations were carried out with the Lanl2dz basis set. The calculated parameters are in good agreement with the corresponding X-ray diffraction values. The combined experimental and theoretical approach allows a consistent assignment for most of the fundamental modes.     

Synthesis and characterization of potassium 1,3-bis(N-methylpiperazino)propan-2-O-xanthate and the complexes of Co(II), Ni(II) and Cu(I) ions

Potassium 1,3-bis(N-methyl piperazino)propan-2-O-xanthate (LK), and its complexes with Co(II), Ni(II) and Cu(I) ions have been prepared and characterized as [CoL₂(H₂O)₂], [NiL₂(H₂O)₂]·2H₂O and CuL·2H₂O by FT-IR, ¹H and ¹³C?NMR spectroscopies, elemental analyses, magnetic susceptibility and TGA techniques.     

Synthesis, crystal structure and in vitro antibacterial activity of two novel silver(I) complexes

Two silver(I) complexes [Ag₂(dppm)₂(L¹)₂(CH₂Cl₂)₂] (1) and [Ag₄(dppm)₂(L²)₂(NO₃)₂] (2) have been prepared by the reactions of [Ag₂(dppm)₂(NO₃)₂] with HL¹ and HL² [dppm = bis(diphenylphosphino)methane, HL¹ = 2-(9H-carbazol-9-yl) acetic acid and HL² = (E)-3-(4-(9H-carbazole-9-yl) phenyl) acrylic acid], respectively. Both complexes have been structurally characterized by X-ray crystallography, confirming that 1 is a binuclear complex whereas 2 is a tetranuclear one. Both complexes were assayed for antibacterial activity against two Gram-positive bacterial strains (Bacillus subtilis ATCC 6633 and Staphylococcus aureus ATCC 6538) and two Gram-negative bacterial strains (Pseudomonas aeruginosa ATCC 13525 and Escherichia coli ATCC 35218) by MTT method. Complex 2 exhibited powerful antibacterial activities against B. subtilis ATCC 6633 with MIC of 0.78 μg/mL, which was superior to the positive controls penicillin G. On the basis of the biological results, structure-activity relationships were discussed.