Electrochemical behaviour of Pt(100), Pt(111) and Pt polycrystalline surfaces in hydrogencarbonate solution

It was demonstrated that adsorbed CO is obtained from the reduction of NaHCO₃ solution when Pt(100), Pt(110), disordered Pt(111) and polycrystalline electrodes are employed. Reduction of CO₂ coming from the dissociation of the hydrogencarbonate anion is proposed as the reaction that produces CO. By using Fourier transform infrared spectroscopy, linear and multi-bonded CO were detected on polycrystalline platinum electrodes. The shape of the band associated with linearly adsorbed CO is monopolar as a consequence of the partial overlapping, at lower wavenumbers, of the absolute bands at both potentials (0.05 and 0.35 V).     

Electrochemical detection of cytosine and 5-methylcytosine on Au(111) surfaces

In this communication we report a voltammetric study of the adsorption–desorption of cytosine (C) and methylcytosine (mC) on well-defined gold (Au) electrodes. The voltammetric measurements clearly indicate that these processes are extremely sensitive to the Au surface structure and in particular to the presence of (111) surface domains. Interestingly, on Au(111) surfaces, a linear correlation between the C and mC concentrations (logarithm scale) and the peak potential of the main voltammetric feature is found. In addition, in the simultaneous presence of both molecules, mC governs the electrochemical response, which has allowed its accurate quantification in C-mC mixtures. In situ FTIR spectroscopic measurements have been carried out to deepen on this mC electrochemical sensitivity. This research may contribute to the future development of an electrochemical sensor for the determination of the degree of methylation in DNA.     

A theoretical study of atomic oxygen chemisorption on the Ni(100) and Ni(111) surfaces

Atomic oxygen chemisorption has been studied for the fourfold hollow site of the Ni(100) surface and for the threefold hollow site of the Ni(111) surface. To model the Ni(100) surface, 10 different clusters in the range Ni₅ to Ni₄₁ were used, and for the Ni(111) surface, 11 different clusters in the range Ni₁₃ to Ni₄₃ were used. A detailed analysis of the orbital occupations of the cluster with and without oxygen for the different clusters shows that there are three different possible bonding mechanisms. In two of these, the basic feature is that a₁ electrons of the cluster are kicked out by the oxygen 2p_z orbital and moved to holes in the 2p_{x, y} orbitals. A picture where the oxygen electrons fit into the electronic structure of the cluster is emphasized. The third mechanism, which is applicable for only one cluster, can be described as the formation of two covalent bonds of E symmetry. The final best estimate of the oxygen chemisorption energy for the Ni(100) surface is about 130 kcal/mol, and for the Ni(111) surface, about 115 kcal/mol. In particular for the Ni(111) surface, an excited oxygen state with radical character is identified, which might be a catalytically important species. The excitation energy to reach this state should be on the order of 10 kcal/mol for the Ni(111) surface.     

Thiol- and disulfide-modified oligonucleotide monolayer structures on polycrystalline and single-crystal Au(111) surfaces

We provide a comprehensive study of single- (ss) and double-strand (ds) oligonucleotides with either 25 or 10 bases or base pairs (bp) immobilized on polycrystalline and single-crystal Au(111) surfaces. The study is based on X-ray photoelectron spectroscopy, cyclic and differential pulse voltammetry, interfacial capacitance data, and electrochemical scanning tunnelling microscopy (in situ STM). The sequences used were the 25-bp sequence from the BRCA1 gene (25-mer), while the 10-bp oligonucleotides contained solely linear adenine and thymine sequences. The oligonucleotides were modified by the dimethoxytrityl group (DMT) via a disulfide group [DMT-S-S-ss25-mer and DMT-S-S-ds(AT)₁₀], a pure disulfide group (A₁₀-S-S-T₁₀), or a thiol group [HS-ss25-mer and HS-ds-(AT)₁₀], all via a hexamethylene linker. The overall pattern suggests strategies for controlled adsorption of DNA-based molecules and recognition of complementary strands or other molecules.     

氢原子在Ni(100), Ni(111)和Ni(110)面上吸附扩散势能面的结构

本文构造了氢-镍相互作用的5参数Morse势, 用经典的对势方法研究氢原子在Ni(100), Ni(111)和Ni(110)面上的吸附和扩散, 得到氢原子在三个表面上的吸附位、吸附几何、结合能及本征振动等数据, 和实验结果符合得很好。同时, 系统地研究了三个体系的吸附扩散势能面结构。     

Dual-scale modeling of benzene adsorption onto Ni(111) and Au(111) surfaces in explicit water.

We present a multiscale modeling approach for studying interactions of organic molecules with metal surfaces in explicit water. The approach is based on combining adsorption energies of isolated molecules on transition metal surfaces calculated by ab initio density functional methods and classical molecular dynamics simulations using atomistically detailed force fields. The interaction of benzene with Ni(111) and Au(111) surfaces was studied. It is shown that a strong affinity of water for the hydrophilic surfaces makes benzene adsorption on Au thermodynamically unfavorable, while on Ni there is no preference. The work presented here serves as a first step in modeling the interactions of larger organic molecules with metal surfaces.     

Hierarchical self-assembly of designed 2 x 2-alpha-helix bundle proteins on Au(111) surfaces

Self-assembled monolayers of biomolecules on atomically planar surfaces offer the prospect of complex combinations of controlled properties, e.g., for bioelectronics. We have prepared a novel hemi-4-alpha-helix bundle protein by attaching two alpha-helical peptides to a cyclo-dithiothreitol (cyclo-DTT) template. The protein was de novo designed to self-assemble in solution to form a 4-alpha-helix bundle, whereas the disulfide moiety enables the formation of a self-assembled monolayer on a Au(111) surface by opening of the disulfide, thus giving rise to a two-step self-assembly process. The 2 x 2-alpha-helix bundle protein and its template were studied by X-ray photo electron spectroscopy (XPS), electrochemical methods, and electrochemical in situ scanning tunneling microscopy (in situ STM). XPS showed that the cyclo-DTT opens on adsorption to a gold surface with the integrity of the 2 x 2-alpha-helix bundle proteins retained. The surface properties of the DTT and 2 x 2-alpha-helix bundle protein adlayer were characterized by interfacial capacitance and impedance techniques. Reductive desorption was used to determine the coverage of the adlayers, giving values of 65 and 16 muC cm(-2) for DTT and 2 x 2-helix, respectively. The 2 x 2-alpha-helix bundle protein adlayers were imaged by in situ STM. The images indicated a dense monolayer according with the voltammetric data. No long-range order could be detected, but two clearly distinct STM contrasts were assigned to 2 x 2-alpha-helix bundle protein molecules oriented in parallel and antiparallel conformations. The template molecule DTT alone forms highly ordered 30-40 nm domains, giving an adlayer density which agreed well with the coverage determined by voltammetry. This could be exploited in STM imaging of mixed DTT/2 x 2-alpha-helix bundle protein monolayers, with clearly distinct STM patterns of the two components.     

Electrochemical reduction of mesoxalic acid on polycrystalline platinum surfaces

The electrochemical reduction of mesoxalic acid on polycristalline platinum surfaces has been studied in acid medium. The reaction proceeds through the interaction with adsorbed hydrogen atoms. Malonic acid is proposed as final reaction product.

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Elektrochemische Reduktion von Mesoxalsäure auf polykristallinen Platinoberflächen

Zusammenfassung Die elektrochemische Reduktion von Mesoxalsäure auf polykristallinen Platinoberflächen wurde in saurem Medium untersucht. Die Reaktion verläuft über die Wechselwirkung mit adsorbierten Wasserstoffatomen, wobei als Endprodukt Malonsäure entsteht.

     

CO在Pt(111)和Pt-M(111)(M=Ni,Mg)表面吸附的理论研究

采用密度泛函理论与周期性平板模型相结合的方法,对CO在Pt(111)表面top,fcc,hcp和bridge 4个吸附位和Pt-M(111)(M=Ni,Mg)表面h-top,M-top,Pt(M)Pt-bridge,Pt(M)M-bridge,Pt(Pt)M-bridge,M(Pt)M-bridge,Pt1M2-hcp...     

Electrochemical oxidative formation of ordered monolayers of thiol molecules on Au(111) surface

Electrochemical oxidative formation of thiolate monolayers on a Au(111) surface in KOH ethanol solutions of various thiol concentrations is described. The formation process was investigated by electrochemistry, in situ scanning tunneling microscopy (STM), and surface X‐ray diffraction (SXRD). The reductive charge in the linear sweep voltammogram after keeping the potential at +0.1 V increased with holding time and reached the saturated value of 103 µC cm^?2, corresponding to the full monolayer coverage of the ( ) structure. The desorption peak shifted negatively with holding time even after the monolayer was formed, suggesting that ordering of the monolayer requires a much longer time than full coverage adsorption. The herringbone structure, corresponding to the ( × 23) structure, was observed on the Au(111) surface in KOH ethanol solution by in situ STM, which shows that a clean surface was exposed. When hexanethiol ethanol solution was added into the ethanol solution at ?450 mV so that the final thiol concentration was higher than ca. 5 µM, generation of vacancy islands (VIs) was observed, which shows the potentiostatic monolayer formation. When the potential was scanned positively from ?950 mV where a clean reconstructed Au(111) surface was exposed, generation of VIs was observed accompanied by anodic current flow. During both oxidative adsorption and reductive desorption of the monolayer, the shape of the steps of the gold surface changed drastically, which suggests that the gold atoms on the surface are extremely mobile during the monolayer formation. SXRD measurement confirmed the surface reconstruction lifting upon monolayer formation. © 2009 The Japan Chemical Journal Forum and Wiley Periodicals, Inc. Chem Rec 9: 199–209; 2009: Published online in Wiley InterScience ( www.interscience.wiley.com ) DOI 10.1002/tcr.200900002     

Chiral recognition of PVBA on Pd(111) and Ag(111) surfaces

An asymmetric planar molecule, 4-trans-2-(pyrid-4-yl-vinyl) benzoic acid (PVBA), has been used to establish the organic chiral recognition on fcc(111) metal surfaces. The strong correlation between the orientation and chiral recognition of PVBA on both Ag(111) and Pd(111) guides the choice of a model potential, which determines the relative binding energy of PVBA on fcc(111). An angle-dependent calculation of relative binding energy reproduces the experimental observation of the chiral recognition of PVBA on Ag(111) but not on Pd(111).     

X-ray and filtered UV photoelectron spectroscopic study of CO absorbed on Ni(100) and (111) surfaces

The 4σ, 1π and 5σ orbitals, and possibly the 2π^* orbital, of CO adsorbed on (100) and (111) nickel surfaces, have been detected using both XPS and filtered UPS techniques. The 3σ level was detected only by XPS at ≈ 29 eV with a full width half-maximum of ≈ to 12 eV. The Cls and Ols binding energy shifts exhibit systematic differences between the two surfaces, being larger on the (111) surface.     

Experimental and theoretical study of reactivity trends for methanol on Co/Pt(111) and Ni/Pt(111) bimetallic surfaces

Methanol was used as a probe molecule to examine the reforming activity of oxygenates on NiPt(111) and CoPt(111) bimetallic surfaces, utilizing density functional theory (DFT) modeling, temperature-programmed desorption, and high-resolution electron energy loss spectroscopy (HREELS). DFT results revealed a correlation between the methanol and methoxy binding energies and the surface d-band center of various NiPt(111) and CoPt(111) bimetallic surfaces. Consistent with DFT predictions, increased production of H2 and CO from methanol was observed on a Ni surface monolayer on Pt(111), designated as Ni-Pt-Pt(111), as compared to the subsurface monolayer Pt-Ni-Pt(111) surface. HREELS was used to verify the presence and subsequent decomposition of methoxy intermediates on NiPt(111) and CoPt(111) bimetallic surfaces. On Ni-Pt-Pt(111) the methoxy species decomposed to a formaldehyde intermediate below 300 K; this species reacted at approximately 300 K to form CO and H2. On Co-Pt-Pt(111), methoxy was stable up to approximately 350 K and decomposed to form CO and H2. Overall, trends in methanol reactivity on NiPt(111) bimetallic surfaces were similar to those previously determined for ethanol and ethylene glycol.     

Identification of Hydroxyl on Ni(111)

Hydroxyl (OH) is identified and characterized on the Ni(111) surface by high‐resolution electron energy loss spectroscopy. We find clear evidence of stretching, bending, and translational modes that differ significantly from modes observed for H₂O and O on Ni(111). Hydroxyl may be produced from water by two different methods. Annealing of water co‐adsorbed with atomic oxygen at 85 K to above 170 K leads to the formation of OH with simultaneous desorption of excess water. Pure water layers treated in the same fashion show no dissociation. However, the exposure of pure water to 20 eV electrons at temperatures below 120 K produces OH in the presence of adsorbed H₂O. In combination with temperature‐programmed desorption studies, we show that the OH groups recombine between 180 and 240 K to form O and immediately desorbing H₂O. The lack of influence of co‐adsorbed H₂O at 85 K on the O? H stretching mode indicates that OH does not participate in a hydrogen‐bonding network.     

Chiral structures of 6,12-dibromochrysene on Au(111) and Cu(111) surfaces

Nanoscale low-dimensional chiral architectures are increasingly receiving scientific interest, because of their potential applications in many fields such as chiral recognition, separation and transformation. Using 6,12-dibromochrysene (DBCh), we successfully constructed and characterized the large-area two-dimensional chiral networks on Au(111) and one-dimensional metal-liganded chiral chains on Cu(111) respectively. The reasons and processes of chiral transformation of chiral networks on Au(111) were analyzed. We used scanning tunneling spectroscopy (STS) to analyze the electronic state information of this chiral structure. This work combines scanning tunneling microscopy (STM) with non-contact atomic force microscopy (nc-AFM) techniques to achieve ultra-high-resolution characterization of chiral structures on low-dimensional surfaces, which may be applied to the bond analysis of functional nanofilms. Density functional theory (DFT) was used to simulate the adsorption behavior of the molecular and energy analysis in order to verify the experimental results.     

Halogen-substituted thiophenol molecules on Cu(111)

Para-halosubstituted thiophenols (X-TPs, where X is Br, Cl, or F) form ordered islands and monolayers on Cu(111) at temperatures as low as 81 K. At incomplete coverages, all X-TPs adsorb with the dehydrogenated thiol group attached to the substrate and the substituted ring inclined toward the surface, as verified experimentally and theoretically. The structure of ordered islands has a pronounced dependence on the nature of the halogen substituent: while unsubstituted TP and pentafluoro-TP molecules do not self-assemble into extended ordered patterns at 81 K, X-TP molecules form a range of different structures which depend both on the size and electronegativity of the substituent, as well as on the coverage.     

Hydration processes of electrolyte anions and cations on pt(111), Ir(111), Ru(001) and Au(111) surfaces: coadsorption of water molecules with electrolyte ions

Water adsorption on Pt( 111) and Ru(001) treated with oxygen, hydrogen chloride and sodium atom at 20 K has been studied by Fourier transform infrared spectroscopy, scanning tunneling microscopy and surface X-ray diffraction. Water molecules chemisorb predominantly on the sites of the electronegative additives, forming hydrogen bonds. Three types of hydration water molecules coordinate to an adsorbed Na atom through an oxygen lone pair. In contrast, water molecules adsorb on electrode surfaces in a simple way in solution. In 1 mM CuSO4 + 0.5 M H2SO4 solution on an Au(111) electrode surface, water molecules coadsorb not only with sulfuric acid anions through hydrogen bonding but also with copper, over wide potential ranges. In the first stage of underpotential deposition (UPD), each anion is accommodated by six copper hexagon (honeycomb) atoms on which water molecules dominate. At any UPD stage water molecules interact with both the copper atom and sulfuric acid anions on the Au(111) surface. Water molecules also coadsorb with CO molecules on the surface of 2 x 2-2CO-Ru(001). All of the hydration water molecules chemisorb weakly on the surfaces. There appears to be a correlation between the orientation of hydrogen bonding water molecules and the electrode potential.     

Competitive self-assembly of symmetrical, difunctional molecules on ambient copper surfaces

This paper describes competitive self-assembly from solutions of symmetric alpha,omega-difunctional molecules on Cu substrates briefly exposed (less than 5 min) to ambient conditions. XPS and PM-IRRAS were utilized as complimentary surface analytical techniques to characterize the resulting organized organic thin films (OOTFs) on these "ambient" Cu surfaces. The order of preferential adsorption was observed to be diisocyanide approximately = dithiol > dicarboxylic acid > dinitrile > diisothiocyanate, indicating that the isocyanide (-NC), and thiol (-SH) functions provide the strongest adhesion to ambient Cu. 1,4-Phenylene diisocyanide and 1,4-terephthalic acid were both observed to adopt a standing-up phase configuration, in which the difunctional molecules bond to the base substrate through only one terminal functional group, with the other terminal group disposed away from the substrate. This indicates the ability to utilize OOTFs to produce "sticky surfaces" on ambient Cu. All other molecules bonded to the substrate through both terminal groups, in either surface-parallel or arched "hairpin" configurations. On the basis of these findings, aromatic diisocyanides and diacids are the most suitable molecules for creating OOTFs with high packing density. Such films can be utilized as protective coatings in the assembly of printed circuit boards, where Cu is becoming an increasingly important substrate for interconnects. Moreover, the ability to create chemically sticky surfaces on ambient Cu substrates indicates exciting potential for the development of a new surface-mount technology operative at the nanometer scale.     

Co-adsorption of water and hydrogen on Ni(111)

We have studied the surface coverage dependence of the co-adsorption of D and D(2)O on the Ni(111) surface under UHV conditions. We use detailed temperature-programmed desorption studies and high resolution electron energy loss spectroscopy to show how pre-covering the surface with various amounts of D affects adsorption and desorption of D(2)O. Our results show that the effects of co-adsorption are strongly dependent on D-coverage. In the deuterium pre-coverage range of 0-0.3 ML, adsorption of deuterium leaves a fraction of the available surface area bare for D(2)O adsorption, which shows no significant changes compared to adsorption on the bare surface. Our data indicate phase segregation of hydrogen and water into islands. At low post-coverages, D(2)O forms a two-phase system on the remaining bare surface that shows zero-order desorption kinetics. This two phase system likely consists of a 2-D solid phase of extended islands of hexamer rings and a 2-D water gas phase. Increasing the water post-dose leads at first to 'freezing' of the 2-D gas and is followed by formation of ordered, multilayered water islands in-between the deuterium islands. For deuterium pre-coverages between 0.3 and 0.5 ML, our data may be interpreted that the water hexamer ring structure, (D(2)O)(6), required for the formation of an ordered multilayer, does not form anymore. Instead, more disordered linear and branched chains of water molecules grow in-between the extended, hydrophobic deuterium islands. These deuterium islands have a D-atom density in agreement with a (2x2)-2D structure. The disordered water structures adsorbed in-between form nucleation sites for growth of 3-D water structures. Loss of regular lateral hydrogen bonding and weakened interaction with the substrate reduces the binding energy of water significantly in this regime and results in lowering of the desorption temperature. At deuterium pre-coverages greater than 0.5 ML, the saturated (2x2)-2D structure mixes with (1x1)-1D patches. The mixed structures are also hydrophobic. On such surfaces, submonolayer doses of water lead to formation of 3-D water structures well before wetting the entire hydrogen-covered surface.