Incandescent lamps can produce pyrimidine dimers in DNA

DNA molecules that have been exposed to light from a 150 W incandescent spot lamp are nicked by the Micrococcus luteus endonuclease specific for cyclobutyl-type pyrimidine dimers. The production of these enzyme-sensitive sites increases with increasing spot lamp exposure. These sites have been confirmed to be pyrimidine dimers by their property of being photoreversed by an E. coli photoreactivating enzyme. The emission spectrum of the lamp shows detectable output at wavelengths less than 320 nm. These results indicate that the sensitivity of the techniques utilized in this work can be used to detect low levels of contaminating UV radiation.     

A sequential repair model of photoreactivation in bacteria

Abstract— Kinetics of photoreactivation were studied in E. coli WP2 hcr^-, a strain deficient in dark repair. Cells in aqueous suspension were subjected to u.v.-irradiation, then exposed to photoreactivating light for different periods. Survival curves, with samples at a minimum of six u.v. doses, were obtained at several periods of photoreactivation ranging from zero to maximum. The surviving fractions do not conform to a dose-reduction model, but instead, they fit a ‘sequential repair’ model that assumes as a limiting condition that the number of active enzyme molecules is small. The model used assumed: (1) a single enzyme molecule is active at any one time; and (2) inactivating events are nullified consecutively around the DNA molecule. The mathematics of the model are derived and presented. Photoreactivation is attributed to the action of two processes. (1) A photochemical process, that is rate limiting below 1000 ergs mnr^-2 sec^-1, was measured at a photoreactivating irradiance of 60 ergs mm^-2 sec^-1. This has a rate constant of 5 × 10^-5‘events’ erg^-1 mm². (2) A dark process, measured at photoreactivating irradiances of 4000 and 6000 ergs mm^-2 sec^-1, has a rate constant of 2.2 ‘events’ min^-1.     

Photoreactivation of RNA in UV-irradiated insect eggs (Smittia sp., Chironomidae, Diptera) II. Evidence for heterogeneous light-dependent repair activities

Abstract. Two biological effects of UV radiation upon Smittia eggs are observed, both of which seem to be associated with the formation of pyrimidine dimers in the RNA (largely ribosomal) of the eggs. While irradiation of the anterior pole region causes the formation of an aberrant segment pattern (double abdomen induction), irradiation of entire eggs leads to an arrest of their development (inactiva-tion). Both UV effects are photoreversible with different action spectra of the photoreactivating light. A dose rate dependence of the photoreactivation can be observed after both UV effects. The saturating dose rate is about 6 W/m² (at 440 nm) after UV induction of double abdomens. Upon UV inactivation, the saturating dose rate level for the photoreactivating light is much higher, and a single light flash causes both a considerable biological reactivation and the disappearance of about 7 × 10⁹ pyrimidine dimers from the total RNA per egg. The results indicate the presence of heterogeneous light-dependent repair activities acting upon UV induced pyrimidine dimers in the RNA of the eggs.     

PHOTOREACTIVATING ENZYME FROM NEUROSPORA CRASSA*

Abstract— Extracts of Neurospora crassa contain photoreactivating enzyme by the criteria of ability to split thymine-containing dimers and to increase the transforming ability of u.v.-irradiated Hemophilus influenzae DNA. The latter activity is heat-labile and is destroyed by trypsin. The action spectrum of such in vitro photoreactivation is a simple one (with a single maximum at 405 nm in the range 313 to 436 nm), differing from the more complicated in vitro spectra for yeast and Escherichia coli. However, the in vitro Neurospora spectrum coincides closely with the in vivo spectrum for this organism, suggesting that there is little or no “indirect” photoreactivation in Neurospora. It is concluded that the Neurospora photoreactivating enzyme is probably of a different type than those of yeast and Escherichia coli.     

DESTRUCTION OF PHOTOREACTIVATING ENZYME BY 365 nm RADIATION*

Abstract— Following the observation that in vivo photoreactivation of 365-nm-induced pyrimidine dimers could not be observed chemically, a study was made of the inactivation of photoreactivating enzyme activity by this near-ultraviolet wavelength. It was observed that: (1) Dimers induced in extracted bacterial DNA by 365 nm radiation are completely photoreactivable and are monomerized as an exponential function of the photoreactivation time. (2) Photoreactivability of 254-nm-induced damage in Escherichia coli B/r Hcr is progressively destroyed in vivo as a function of the dose of 365 nm radiation. (3) The ability of the yeast photoreactivating enzyme to monomerize dimers induced at 365 nm in bacterial DNA is destroyed in vitro as a function of the dose of 365 nm radiation, and at a rate comparable to killing of E. coli. These results are consistent with biological measurements which indicate that photoreactivability of ultraviolet (near and far) lethal damage is reduced by exposure of the bacteria to 365 nm radiation.     

Absence of photoreactivation of pyrimidine dimers in the epidermis of hairless mice following exposures to ultraviolet light

Abstract—The influence of photoreactivating light on the fate of UV-induced DNA damage has been measured in the epidermis of hairless mice using damage-specific endonuclease from Micrococcus luteus. Groups of mice were exposed to varying fluences of UV at 297nm or from an FS40 fluorescent sun lamp to induce UV photoproducts. The same fluence-dependent DNA damage was observed in high molecular weight epidermal DNA regardless of whether the mice were killed immediately, or maintained in the dark or under photoreactivating light for 20 h after UV. Thus, no detectable photoreactivation of UV-induced pyrimidine dimers could be demonstrated in mouse epithelial cells in vivo.     

PHOTOREACTIVATION OF ULTRAVIOLET IRRADIATED NON-DIVIDING POPULATIONS OF ICR 2A FROG CELLS

Abstract— Ultraviolet (UV) irradiation of non-dividing populations of ICR 2A frog cells led to their detachment from the surface of the culture dish and eventual lysis. Exposure of the cells to photoreactivating light after UV irradiation prevented cell killing and was accompanied by a loss of endonuclease sensitive sites from DNA. This photoreversal did not take place when the cells were exposed at 4°C to photoreactivating light indicating that the reversal was the result of photoenzymatic repair. As the action of photoreactivating enzyme is specific for the repair of pyrimidine dimers in DNA, these results suggest that pyrimidine dimers in DNA are the critical lesions leading to the death of non-dividing populations of UV irradiated cells.     

Action spectra for photoreactivation of mutation of prototrophy in strains of Escherichia coli possessing and lacking photoreactivating-enzyme activity

Abstract— The action spectrum and dose-rate dependence for photoreactivation of mutation to prototrophy in late-lag-phase cultures of Escherichia coli H³r30 (which lacks active photo-reactivating enzyme) are roughly similar to those for photoprotection from killing in other strains. It is suggested that photoreactivation of this mutation in H/r30 is an indirect effect, similar in mechanism to photoprotection. The action spectrum and dose-rate dependence for photoreactivation of mutation to prototrophy in late-lag-phase cultures of E. coli H³r30-R (which possesses active photoreactivating enzyme) are roughly similar to those for photoreactivation of killing in most other strains. It is suggested that photoreactivation of this mutation in H/r30-R is a direct effect at long wavelengths, but that there is an indirect component at short wavelengths. A quite different interpretation of these data is noted. Finally, it is found that, under the conditions of these experiments, indirect photoreactivation of killing in H/r30 and H/r30-R is weak or nonexistent.     

PHOTOREACTIVATING ENZYME FROM STREPTOMYCES GRISEUS—III. EVIDENCE FOR THE PRESENCE OF AN INTRINSIC CHROMOPHORE

Evidence is presented that DNA photoreactivating enzyme from Streptomyces griseus consists of a high molecular protein part and a low molecular chromophore which is released by denaturation. The free chromophore is highly fluorescent and has an absorption maximum at 420 nm. In native photoreactivating enzyme the chromophore fluorescence is almost completely quenched and there is an additional absorption band at 445 nm. Native photoreactivating enzyme spontaneously looses its chromophore following first order kinetics as measured by the increase of fluorescence intensity. A good correlation was found between the increase of fluorescence intensity and the decrease of biological activity, stressing the importance of the chromophore-protein bond. The presence of DNA greatly retards the spontaneous release of chromophore, and with UV-irradiated DNA the photoreactivating enzyme is almost completely stable. In five different chromatographic systems, cochromatography of biological activity and enzyme-bound chromophore was found, thus ruling out the possibility that the observed chromophore belongs to a contamination in the enzyme preparation. Photoreactivating enzyme binds very strongly to Blue-Sepharose indicating the presence of a positive charge in the polynucleotide binding site.     

PHOTOCHEMISTRY OF KETONES IN SOLUTION-49* A STUDY OF PHOTOSENSITIZED SPLITTING OF DIMETHYLTHYMINE DIMERS

Abstract— Several high energy ketone triplet sensitizers, e.g. carvone, camphor, 3-methylcyclohexanone, benzoin and 3-methylindanone, were studied as photosensitizers for the splitting of dimethylthymine dimers. The absence of splitting in all cases and the lack of quenching of benzoin and 3-methylindanone triplets by the trans-anti dimer of dimethylthymine strongly suggests that cleavage of dimethylthymine dimers cannot be achieved by a triplet mechanism on irradiation at Λ> 300 nm. The absence of optical rotation in the recovered chiral cis-anti dimethylthymine dimer after sensitized photolysis (12% splitting) in the presence of (—)-tryptophan suggests that. in highly polar solvents, such as methanol, where reaction probably takes place according to an electron transfer mechanism involving ion-pair intermediates, close approach of the sensitizer and substrate does not occur. To the extent that these results can be extrapolated to sensitized cleavage of cis-syn pyrimidine dimers in DNA brought about by action of photoreactivating enzyme or conventional photosensitizers, a mechanism involving dimer triplet states appears highly unlikely.     

Photorepair of pyrimidine dimers in the epidermis of the marsupial Monodelphis domestica

Abstract Induction and fate of ultraviolet radiation-induced pyrimidine dimers in DNA have been measured in the epidermis of the marsupial, Monodelphis domestica, using damage-specific endonucleases from Micrococcus luteus. Approximately 90% of the dimers are lost when irradiated animals are subjected to photoreactivating light for 180 min. No loss of dimers was detected when the animals were held for a similar period of time in the dark. The capacity of these epithelial cells to photorepair pyrimidine dimers may provide a useful whole animal system in which to determine the role of pyrimidine dimers in photobiological responses of the skin.     

Absence of repair replication following ultraviolet irradiation of an excision-deficient mutant of Escherichia coli

The excision -repair of damaged DNA in bacteria and other systems probably requires at least three enzymes to carry out the following steps in sequence: (1) Recognition of a structural distortion in the DNA and the production of an endonucleolytic cleavage of the damaged strand near the lesion. (2) The simultaneous peeling back of the damaged strand and resynthesis of the excised region, with eventual cleavage of the damaged segment from the DNA. (3) The rejoining of the newly synthesized strand to contiguous parental DNA. Evidence for all three steps has been obtained from in vivo studies. The E. coli DNA polymerase has been shown to carry out step # 2 in vitro [1] and the polynucleotide ligase has the required specificity for step # 3[2–4]. An enzyme responsible for step # 1 has been purified from Micrococcus lysodeikticus [5,6] but not from E. coli, although a class of u.v. sensitive mutants in E. coli has been shown to be defective in this step in the repair sequence. In such mutants the release of pyrimidine dimers from the damaged DNA is not observed during post-irradiation growth of u.v. irradiated cultures [7]. It would be predicted, as a consequence, that the next step, non-conservative repair replication, would not be seen in these mutants. Hanawalt and Petti-john showed this to be true for the double mutant E. coli B_8-1 that includes a deficiency in dimer excision [8]. In the present study we have looked more closely at an E. coli K-12 strain that has only the uvrA6 deficiency that results in inability to excise pyrimidine dimers.     

Dissociation and catalytic activity of oligomer forms of β-galactosidases

The dissociation of oligomer forms of bacterial Escherichia coli, yeast Kluyveromices fragilis, and bovine liver β-galactosidases was studied. The catalytic constants for the dimers and tetramers of the bacterial enzyme, dimers and monomers of the animal enzyme, and dimers of the yeast enzyme in the reaction of hydrolysis of 2-nitrophenyl-β-D-galactopyranoside were determined. At 25°C, these values were found to be 180 and 400 s^?1 for the bacterial enzyme, 0.01 and 0.08 s^?1 for the bovine liver enzyme, and 45.4 s^?1 for the yeast enzyme, respectively. The other oligomer forms of the β-galactosidases were inactive under conditions of these experiments.     

DNA polymerase I-mediated repair of 365 nm-induced single-strand breaks in the DNA of Escherichia coli.

Abstract. Irradiation of closed circular phage Λ DNA in vivo at 365 nm results in the induction of single-strand breaks and alkali-labile lesions at rates of 1.1 × 10^-14, and 0.2 × 10^-14/dalton/J/m², respectively. The sum of the induction rates is similar to the rate of induction of single-strand breaks plus alkali-labile lesions (1 × 10^-14/dalton/J/m²) observed in the E. coli genome. Postirradiation incubation of wild-type cells in buffer results in rapid repair of the breaks (up to 80% repaired in 10 min). No repair was observed in a DNA polymerase I-deficient mutant of E. coli.     

SUBSTRATE SPECIFICITY OF A BACTERIAL UV ENDONUCLEASE AND THE OVERLAP WITH IN VITRO PHOTOENZYMATIC REPAIR

Abstract— The action of an endonuclease from Micrococcus luteus , that operates on ultraviolet (UV) radiation damage, overlaps greatly with that of the yeast photoreactivating enzyme: homo and hetero cyclobutyl pyrimidine dimers in DNA are substrate for both enzymes, but pyrimidine adducts or the 'spore photoproduct' in DNA are not.
As expected from this overlap, the action of the two enzymes is mutually interfering: single-strand nicks introduced by the endonuclease effectively preclude photoreactivation; conversely, formation of a photoreactivating enzyme-dimer complex can prevent nicking by the UV endonuclease. While complex formation between photoreactivating enzyme and dimers in UV-endonuclease-treated DNA is apparently normal, the light-dependent repair step either fails to occur or proceeds at a very low rate. Hence, besides the requirement of a minimum chain length for the function of the photoreactivating enzyme, there is the additional restriction on the position of the dimer in a polynucleotide strand.
Finally, rough approximations of the rate constants, k ₁ and k ₂, for the UV endonuclease indicate that the in vitro UV-endonuclease-dimer complex is relatively unstable, with dissociation of the complex being more probable than hydrolysis of the phosphodiester bond.     

PHOTOREACTIVATING ENZYME FROM Streptomyces griseus—VI. ACTION SPECTRUM AND KINETICS OF PHOTOREACTIVATION

Abstract— A high resolution action spectrum for photoreactivation was determined using purified photoreactivating enzyme from Streptomyces griseus. Conversion of pyrimidine dimers in UV-irradiated DNA, the substrate for photoreactivating enzyme, was measured with a Haemophilus influenzae transformation assay. A high similarity was found between action spectrum (max. at 445 nm) and the long wavelength absorption band (max. at 443 nm)of photoreactivating enzyme. In addition to the400–470 nm region considerable photoreactivation was found with wavelengths between 280 and 320 nm. No evidence was obtained for the presence of nonenzymatic photoreactivation. Comparison of in vitro and in vivo action spectra revealed that the sharp peak at 313 nm found in vivo is probably the result of counteracting photoreactivation and inactivation effects. Comparison of the action spectrum with the absorption spectrum of 8-hydroxy-10-methyl-5-deazaisoalloxazine in an aprotic dipolar solvent (which serves as a model for the 8-hydroxy-5-deazaflavin chromophore in photoreactivating enzyme) indicates the possible presence of other chromophore(s) involved in the photorepair process. From kinetic measurements and flash experiments values were obtained for the rate constants of the photoreactivation reaction. The quantum yield of photoreactivation was estimated to be approximately 1.     

Induction of phr gene expression in E. coli strain KY706/pPL-1 by He–Ne laser (632.8 nm) irradiation

We have observed that He–Ne laser irradiation of E. coli strain KY706/pPL-1 leads to induction of photolyase gene, phr. The magnitude of induction was found to depend on the He–Ne laser fluence, fluence rate and post-irradiation incubation period in the nutrient medium. The optimum values for fluence and fluence rate were 7×10³ J/m² and 100 W/m², respectively, and the induction of phr gene was observed to saturate beyond an incubation period of 2 h. Experiments carried out with singlet oxygen quenchers and with D₂O suggest that the effect is mediated via singlet oxygen. Photoreactivation studies carried out after UVC exposure of both the He–Ne laser-exposed as well as unexposed cells showed a larger surviving fraction in the He–Ne laser pre-irradiated cells. This can be attributed to He–Ne laser irradiation-induced induction of phr expression. However, since even without photoreactivating light He–Ne laser pre-irradiated cells show higher survival against UVC radiation it appears that He–Ne laser irradiation induces both light-dependent as well as dark DNA repair processes.     

Photoreactivating Enzyme for (6–4) Photoproducts in Cultured Goldfish Cells

We previously reported that when cultured goldfish cells are illuminated with fluorescent light, photorepair ability for both cyclobutane pyrimidine dimers and (6–4) photoproducts increased. In the present study, it was found that the duration of the induced photorepair ability for cyclobutane pyrimidine dimers was longer than that for (6–4) photoproducts, suggesting the presence of different photolyases for repair of these two major forms of DNA damage. A gel shift assay was then performed to show the presence of protein(s) binding to (6–4) photoproducts and its dissociation from (6–4) photoproducts under fluorescent light illumination. In addition, at 8 h after fluorescent light illumination of the cell, the binding of pro-tein(s) to (6–4) photoproducts increased. The restriction enzymes that have recognition sites containing TT or TC sequences failed to digest the UV-irradiated DNA pho-toreactivated by using Escherichia coli photolyase for cyclobutane pyrimidine dimers, indicating that restriction enzymes could not function because (6–4) photoproducts remained in recognition sites. But, when UV-irradiated DNA depleted of cyclobutane pyrimidine dimers was incubated with extract of cultured goldfish cells under fluorescent light illumination, it was digested with those restriction enzymes. These results suggested the presence of (6–4) photolyase in cultured goldfish cells as in Dro-sophila, Xenopus and Crotalus.     

THE ACTION SPECTRUM OF AN IN VITRO DNA PHOTOREACTIVATION SYSTEM

Abstract— The wavelength-dependence of in vitro photoreactivation of transforming DNA by yeast extract has been determined. There is an intensity-dependent lag at the beginning of the biological reaction. There is a similar lag in the splitting of thymine dimers by the yeast extract in the light, a process known to account for most or all of the increase in transforming activity of photoreactivated DNA. The most efficient wavelengths for photoreactivation are around 3550 and 3850 Å. Although the action spectrum is not very similar to flavin absorption, riboflavin at very low concentration inhibits photoreactivation, as it also inhibits a number of flavoenzymes, suggesting that the photoreactivating enzyme might be a flavoprotein.     

PHOTOREACTIVATION OF ICR 2A FROG CELLS AFTER EXPOSURE TO MONOCHROMATIC ULTRAVIOLET RADIATION IN THE 252–313 nm RANGE

Abstract— Exposure of ICR 2A frog cells to photoreactivating light after treatment with monochromatic ultraviolet (UV) radiation in the 252–313 nm range resulted in an increase in survival with similar photoreactivable sectors for each of the wavelengths tested. As photoreactivating enzyme is specific for the repair of pyrimidine dimers in DNA, these findings support the hypothesis that these are critical lesions responsible for killing of cells exposed to UV radiation in this wavelength range. The action spectra for cell killing and production of UV-endonuclease sensitive sites were similar to the DNA absorption spectrum though not identical. Because the number of endonuclease sensitive sites is a reflection of the yield of pyrimidine dimers, these data also suggest that the induction of dimers in DNA by UV radiation in the 252–313 nm range is the principal event leading to cell death.