The applicability of AM1 and PM3 semi-empirical methods for the study of N-H bond dissociation enthalpies and ionisation potentials of amine type antioxidants

A study of 40 para-substituted anilines is presented. These serve as model structures of amine type antioxidants. Molecules and their radical structures were studied using the AM1 and PM3 quantum chemical methods in order to calculate the N-H bond dissociation enthalpies (BDEs) and ionisation potentials (IPs) which are among the most important characteristics of antioxidants. Calculated BDEs were compared with available experimental values and the results of DFT calculations to ascertain the suitability of AM1 and PM3 methods for amine BDEs calculation. The results show that both methods reproduce experimental BDEs and DFT data satisfactorily. Comparison with experimental data shows that AM1 and PM3 methods overestimate the IP values. The results also indicate that dependences of N-H bond BDEs and IPs on Hammett constants of the substituents are linear.     

Substituent position effect on the properties of new unsymmetrical isomeric diarylethenes having a chlorine atom

Three new unsymmetrical photochromic diarylethenes bearing a chlorine atom at para-, meta- and ortho-position of one terminal benzene ring, namely {1-(2-methyl-5-phenyl-3-thienyl)-2-[2-methyl-5-(4-chlorophenyl)-3-thienyl]}perfluorocyclopentene (para 1o), {1-(2-methyl-5-phenyl-3-thienyl)-2-[2-methyl-5-(3-chlorophenyl)-3-thienyl]}perfluorocyclopentene (meta 2o), and {1-(2-methyl-5-phenyl-3-thienyl)-2-[2-methyl-5-(2-chlorophenyl) -3-thienyl]}perfluorocyclopentene (ortho 3o), have been synthesized. The substituent position effect on their properties, including photochromism, fluorescence both in solution and in PMMA amorphous film and their electrochemical properties were investigated in detail. The results elucidated that the chlorine atom and its substituent position had a remarkable effect on the absorption characteristics, photochromic reactivity, fluorescence, as well as the electrochemical performances of these diarylethene compounds. For diarylethenes 1, 2 and 3, the cycloreversion quantum yields were gradually increased when the chlorine atom was attached to the para-, meta- and ortho-positions of the one terminal benzene rings; but their molar absorption coefficients both of their open-ring and closed-ring isomers were remarkably decreased. The fluorescent properties of para-substituted diarylethene embedded in poly(methyl methacylate) (PMMA) amorphous film showed good fluorescent switches (quenched to 28%). Furthermore, the cyclic voltammograms experiments elucidated that the electrochemical properties of these diarylethene derivatives were also remarkably dependent on the chlorine atom position effect, which may be attributed to the different electron-inducing ability and steric effect when the chlorine atom was substituted on the different position of the terminal benzene ring.     

Substituent effects on O--H bond dissociation enthalpies and ionization potentials of catechols: a DFT study and its implications in the rational design of phenolic antioxidants and elucidation of structure-activity relationships for flavonoid antioxidants

Density functional theory (DFT) on B3LYP/6-31G(d,p) level was employed to investigate the substituent effects on O--H bond dissociation enthalpies (BDEs) and ionization potentials (IPs) of catechols. It was revealed that the ortho hydroxyl of catechol was effective for the reduction of the O--H BDE; however, the group had little influence on the IP. The para substituent effects upon O--H BDEs and IPs for catechols were roughly the same as those for monophenols, and this gave the catechol moiety more potential than monophenol to be used as a lead compound in rational design of phenolic antioxidants. In addition, the 1,4-pyrone effects on O--H BDEs of catecholic rings A or B of flavonoids were also investigated. Although 1,4-pyrone extended the conjugation system of flavonoids, it was not beneficial to reduce the O--H BDE as a result of its electron-withdrawing property. Thus, 1,4-pyrone was unlikely to be favorable to enhance the H-abstraction activity of flavonoids.     

The preparation of, and electrochemical studies on, some substituted aryl dithiadiazolylium salts and dithiadiazolyl radicals

A series of aryl-substituted 1,2,3,5-dithiadiazolylium cations (I) and 1,3,2,4-dithiadiazolylium cations (II) were prepared as their hexafluoroarsenate(V) salts using standard methods. Electrochemical studies on I and II showed reversible one-electron reductions. The half-wave reduction potentials for a series of meta-substituted derivatives of both I and II exhibited a linear free energy relationship with the Hammett parameter, σ_m. The small value of the reaction constant, , for both meta and para-derivatives indicates that electronic effects are small and in the case of the ortho-derivatives of II, steric effects dominate the redox process. Reduction of the 1,2,3,5-dithiadiazolylium cations, as their chloride salts, yielded the corresponding dithiadiazolyl radicals (III).     

The stability of columns comprising alternating triphenylene and hexaphenyltriphenylene molecules: variations in the structure of the hexaphenyltriphenylene component

Previous investigations of complementary polytopic interaction (CPI) columnar mesophases, in which the columns are built up of alternating hexaalkoxytriphenylene (HAT) and hexaphenyltriphenylene (PTP) molecules, concentrated mainly on the effect of variations in the structure of the HAT component. This investigation is concerned with the effect of variations in the structure of the PTP component and, in particular, variations in the position of an alkoxy side chain in the phenyl ring. Stable columnar mesophases are obtained when a hexyloxy substituent is placed in the meta- or para-position but not in the ortho-position. In the case of the meta- and para-substituted systems, the two-component CPI columnar phases are stable over a considerably larger temperature range than the one-component HAT systems. The evidence suggests that unfavourable PTP/PTP stacking is as much a driving force for the formation of these mixed stacks as is favourable PTP/HAT stacking, but both need to be explained in terms of the sum of atomically dispersed van der Waals and coulombic interactions. On cooling from the isotropic into the Col_h phase, the columnar phase based on a 1:1 mixture of hexakis(hexyloxy)tripenylene and the meta-hexyloxy-substituted PTP gives an unusual texture consisting of 'viking-axe'-shaped structures.     

Nitro and bromo derivatives of a highly fluorinated thiobenzoate

Several compounds derived from monosubstituted thiobenzoates, with substituents in the meta- or para-position, have been prepared; these contain a thioester spacer between a semifluorinated chain and the rigid core unit. The substituent is either a bromo or a nitro group. Their mesomorphic properties were evaluated using polarizing optical microscopy and differential scanning calorimetry. The influence of the different substituents on the phenyl core was considered. No mesomorphic behaviour was seen except for one nitro derivative. The introduction of the nitro group in the para-position of the thiobenzoate core leads to a LC transition on heating. As with previous studies, these results show that substitution at the 4 position on a monophenyl core can lead to liquid crystallinity, whereas substitution in the meta-position does not; this supports the view that meta-substitution is not a necessary condition for obtaining a LC phase.     

Ab initio and DFT studies on the mechanism of the 1,3-dipolar cycloaddition reaction between nitrone and sulfonylethene chloride

The molecular mechanism for the 1,3-dipolar cycloaddition of nitrone with sulfonylethene chlorides has been studied using ab initio and DFT methods at the HF, MP2 and B3LYP levels together with the 6-31G* basis set. Relative rates, stereo and regioselectivity, have been analysed and discussed. For this cycloaddition four reactive channels associated with the formation of two pairs of diastereoisomeric regioisomers have been characterized. Analysis of the geometries of the corresponding transition structures shows that the cycloaddition takes place along a concerted but asynchronous mechanism. Activation energies as asynchronicity are dependent on the computation level. Thus, while HF calculations gave large barriers, MP2 calculations tend to underestimate them. DFT calculations gave reasonable values. These 1,3-dipolar cycloadditions present an endo stereoselectivity while the meta regioselectivity depends on the computational level. Thus, while HF and DFT calculations predict meta path, in agreement with the experimental results, MP2 calculation predict ortho regioselectivity. The frontier molecular orbitals analysis shows that the reaction is controlled by the (HOMO_dipole–LUMO_{dipolarophile}) interaction in agreement with the charge transfer analysis carried out at the transition structures. Inclusion of diffuse functions at the B3LYP/6-31+G* level increases the energy barriers about 4 kcal/mol, giving a similar endo/meta selectivity. Solvent effects have been taken into account, by means of self-consistent reaction field.     

E-2-benzylidenebenzocyclanones. II. IR and mass spectrometric investigations

A series of E-2-benzylideneindanones (a) -tetralones (b) and -benzosuberones (c) with OCH₃ (2–4), NO₂ (5–7) and F (8–10) substituents in ortho, meta or para position was studied by IR and mass spectrometry. The most important IR bands were assigned and stated correlations between some frequencies and the stereostructure or conjugation feature of the molecules investigated. IR spectra were also analyzed in order to find frequencies characteristic of the size of the alkanone ring. The mass spectrometric investigation aimed at determining fragmentation pathways and finding correlations between them and the ring size of the alkanone ring or the position of the substituents.     

Substituent effects on ultrafast excited-state proton transfer of protonated aniline derivatives in aqueous solution

Substituent effects on the proton dissociation of protonated aniline derivatives upon femtosecond laser pulse excitation are investigated for m- and p-cyanoanilines and m- and p-methoxyanilines in aqueous solution. The cyano substitution at the meta-position increases the rate significantly (k_dis=3.7 × 10¹¹ s⁻¹) compared to aniline (k_dis=1.3 × 10¹⁰ s⁻¹), while the methoxy substitution reduces the rate remarkably. Either substituent at the para-position shows only slight influences on the rate. The strong dependences of the k_dis value on the substituent and the substituted position are reasonably explained on the basis of the free energy change.     

Remote substituent effects on homolytic bond dissociation energies

In the study we tried to answer two questions. First, does X-Z homolytic bond dissociation energy (BDE) of Y-C6H4-X-Z obey the Hammett relationship? Second, if it does what factors determine the magnitude and sign of the slope (rho+) of Hammett regression against substituent sigma(p)(+) constants? We collected a large number of X-Z BDEs for over one-thousand Y-C6H4-X-Z systems using the RMP2/6-311++G**//UB3LYP/6-31G* method. We found that remote substituent effects on X-Z BDEs are determined by both the ground effect (i.e. stabilization/destabilization of X-Z by the substituents) and the radical effect (i.e. stabilization/destabilization of X. by the substituents). The ground or radical effect is determined by the electron demand of X-Z or X. in the same way as the deprotonation enthalpy of HOOC-C6H4-X-Z or HOOC-C6H4-X. is affected by X-Z or X. . As a result, rho+ (BDE) for X-Z bond homolysis can be quantitatively predicted by using the change in deprotonation enthalpy from HOOC-C6H4-X-Z to HOOC-C6H4-X. .     

Assessing the role of Hartree‐Fock exchange,correlation energy and long range corrections in evaluating ionization potential,and electron affinity in density functional theory

Accurate determination of ionization potentials (IPs), electron affinities (EAs), fundamental gaps (FGs), and HOMO, LUMO energy levels of organic molecules play an important role in modeling and predicting the efficiencies of organic photovoltaics, OLEDs etc. In this work, we investigate the effects of Hartree Fock (HF) Exchange, correlation energy, and long range corrections in predicting IP and EA in Hybrid Functionals. We observe increase in percentage of HF exchange results in increase of IPs and decrease in EAs. Contrary to the general expectations inclusion of both HF exchange and correlation energy (from the second order perturbation theory MP2) leads to poor prediction. Range separated Hybrid Functionals are found to be more reliable among various DFT Functionals investigated. DFT Functionals predict accurate IPs whereas post HF methods predict accurate EAs. © 2017 Wiley Periodicals, Inc.     

S=O homolytic bond dissociation enthalpies in sulfoxides

The S=O bond dissociation enthalpies (BDE) were calculated using high-level ab initio methods including G3, G3B3, CBS-Q, CBS-4M, CCSD(T), and MP2. Based on the comparison of these theoretical values and experimental ones, the performances of a number of density functional theory (DFT) methods were then assessed. It was found that the B3P86 method gave the lowest root of mean square error. We therefore used this method to calculate the S=O BDEs of a number of substituted sulfoxides. The electronic effect of the substituents and the remote substituents effect of aryl-substituted sulfoxides on S=O BDE were investigated. In addition, a molecular orbital analysis of typical molecules was conducted in order to investigate the electronic effect on S=O BDEs. We also predicted several S=O BDE values of heteroaromatic substituted sulfoxides using the B3P86 method.     

Heterocyclic columnar pyrimidines: synthesis, characterization and mesomorphic properties

The synthesis, characterization, and mesomorphic properties of two series of heterocyclic compounds derived from a pyrimidine core are reported. These series, 1a and 1b, are substituted with a variety of functional groups (X=NHSO₂CF₃, F, Cl, Br, I, OCH₃, CH₃, C₂H₅) at the C^3' (meta)- or C^4' (para)-position of the terminal phenyl ring, and the substituent effect on mesophase formation was studied. The compounds were characterized by ¹H and ¹³C NMR spectroscopy and elemental analysis, and the mesomorphic behavior of the compounds was characterized and studied by differential scanning calorimetry, polarizing optical microscopy and powder X-ray diffraction. Most of the compounds were mesogenic at room temperature, and the mesophases were assigned as lamellar columnar (Col_L) phases, as expected for disk-like molecules. The results also revealed that compounds with a para-substituent (1a; except for -OCH₃) at the C^4'-position, exhibited higher clearing temperatures and wider temperature mesophase ranges than those of compounds with a meta-substituent (1b) at the C^3'-position. The higher clearing temperatures may be attributed to stronger dipolar interactions resulting from a greater resonance effect with the central core for para-substitution than for meta-substitution. The results also indicated that the columnar mesophases observed show a correlation with the electronic properties of the substituents; compounds containing electron-withdrawing substituents (X=F, Cl, Br, I, NHSO₂CF₃) also have higher clearing temperatures than compounds containing electron-donating substituents (X=Me, Et, OMe).     

Chloromethylphenylcarbamate derivatives of cellulose as chiral stationary phases for high-performance liquid chromatography

A new class of eight chloromethylphenylcarbamate derivatives of cellulose was prepared by introducing both an electron-donating methyl group and an electron-withdrawing chloro group on to the phenyl moieties and their chiral recognition abilities were evaluated as chiral stationary phases (CSPs) for high-performance liquid chromatography. The superiority of these derivatives over dichloro- and dimethylphenylcarbamates of cellulose as CSPs was demonstrated for some racemic compounds. The elution order and enantioselectivity were greatly dependent on the positions of the substituents. Meta- and para-disubstituted derivatives showed higher chiral recognition than ortho- and meta- or para- disubstituted derivatives. The correlation between the chemical shifts of the N---H protons of the carbamate moieties and the enantiomer-resolving abilities of the derivatives is discussed. Some of the derivatives were effective CSPs in both normal- and reversed- phase conditions and could efficiently separate some chiral drug enantiomers.     

Molecular structure and conformational stability of allylisocyanate—post-Hartree–Fock and density functional theory studies

The molecular structure and conformational stability of allylisocyanate (CH₂CHCH₂NCO) molecule was studied using the ab initio and DFT methods. The geometries of possible conformers, C-gauche (δ=120°, θ=0°) (δ=C=C–C–N and θ=C–C–N=C) and C-cis N-trans (δ=0° and θ=180°) were optimized employing HF/6-31G^*, MP2/6-31G^* levels of theory of ab initio and BLYP, B3LYP, BPW91 and B3PW91 methods of DFT implementing the atomic basis set 6-311+G(d,p). The structural and physical parameters of the above conformers were discussed with the experimental and theoretical values of the related molecules, methylisocyanate and 3-fluoropropene. It has been found that the N=C=O bond angle is not linear as the experimental result for both the conformers and the theoretical bond angle is 173°. The rotational potential energy surfaces have been performed at the HF/6-31G^*, and MP2/6-31G^* levels of theory. The Fourier decomposition potentials were analysed at the HF/6-31G^*, and MP2/6-31G^* levels of theory. The HF/6-31G^* level of theory predicted that the C-gauche conformer is more stable than the C-cis N-trans conformer by 0.41 kJ/mol, but the MP2 and DFT methods predicted the C-cis N-trans conformer is found to be more stable than the C-gauche conformer. The calculated chemical hardness value at the HF/6-31G^* level of theory predicted the C-cis N-trans form is more stable than C-gauche form, whereas the chemical hardness value at the MP2/6-31G^* level of theory favours the slight preference towards the C-gauge conformer.     

Ab initio and density function theory computational studies of the CH4 + H → CH3 + H2 reaction

The activation barrier for the CH₄ + H → CH₃ + H₂ reaction was evaluated with traditional ab initio and Density Functional Theory (DFT) methods. None of the applied ab initio and DFT methods was able to reproduce the experimental activation barrier of 11.0-12.0 kcal/mol. All ab initio methods (HF, MP2, MP3, MP4, QCISD, QCISD(T), G1, G2, and G2MP2) overestimated the activation energy. The best results were obtained with the G2 and G2MP2 ab initio computational approaches. The zero-point corrected energy was 14.4 kcal mol⁻¹. Some of the exchange DFT methods (HFB) computed energies which were similar to the highly accurate ab initio methods, while the B3LYP hybrid DFT methods underestimated the activation barrier by 3 kcal mol⁻¹. Gradient-corrected DFT methods underestimated the barrier even more. The gradient-corrected DFT method that incorporated the PW91 correlational functional even generated a negative reaction barrier. The suitability of some computational methods for accurately predicting the potential energy surface for this hydrogen radical abstraction reaction was discussed.     

Sulfur and selenium ylide bond enthalpies

The bond dissociation enthalpies (BDEs) of sulfur and selenium ylides have been estimated by applying MP2/6-311++G(3df,2p)//MP2/6-31G(d,p), G3, and other computational methods. Computed sulfoxide bond enthalpies were compared to experimental results to ensure the reliability of the computational methods before extending to related compounds. The examined ylides include the following: sulfoxides, sulfilimines, S,C-sulfonium ylides, and selenoxides. Selenoxides have BDEs about 10 kcal/mol smaller than the corresponding sulfoxides. N-H sulfilimines and CH2-S,C-sulfonium ylides have low BDEs, unless the sulfilimine or S,C-sulfonium ylide is stabilized by an electronegative substituent on N or C, respectively. Incorporation of the S or Se into a thiophene or selenophene-type ring lowers the BDE for the ylide.     

DFT/B3LYP study of the substituent effect on the reaction enthalpies of the individual steps of single electron transfer-proton transfer and sequential proton loss electron transfer mechanisms of phenols antioxidant action

The reaction enthalpies related to the individual steps of two phenolic antioxidants action mechanisms, single electron transfer-proton transfer (SET-PT) and sequential proton loss electron transfer (SPLET), for 30 meta and para-substituted phenols (ArOH) were calculated using DFT/B3LYP method. These mechanisms represent the alternative ways to the extensively studied hydrogen atom transfer (HAT) mechanism. Except the comparison of calculated reaction enthalpies with available experimental and/or theoretical values, obtained enthalpies were correlated with Hammett constants. We have found that electron-donating substituents induce the rise in the enthalpy of proton dissociation (PDE) from ArOH+* radical cation (second step in SET-PT) and in the proton affinities of phenoxide ions ArO- (reaction enthalpy of the first step in SPLET). Electron-withdrawing groups cause the increase in the reaction enthalpies of the processes where electron is abstracted, i.e., in the ionization potentials of ArOH (first step in SET-PT) and in the enthalpy of electron transfer from ArO- (second step in SPLET). Found results indicate that all dependences of reaction enthalpies on Hammett constants of the substituents are linear. The calculations of liquid-phase reaction enthalpies for several para-substituted phenols indicate that found trends hold also in water, although substituent effects are weaker. From the thermodynamic point of view, entering SPLET mechanism represents the most probable process in water.     

Isomeric polyimides based on fluorinated dianhydrides and diamines for gas separation applications

The gas sorption and transport properties of two isomeric polyimides with hexafluoroisopropylidene moieties in the diamine and dianhydride monomers were characterized for a variety of gases at 35°C at pressures up to 60 atm. These materials have structural properties which inhibit intrasegmental rotational mobility and intersegmental chain packing. The effect of isomerism on the physical and gas separation properties of these rigid materials was investigated. The effect of isomerism on the hindrance to packing is reflected in the wide angle X-ray diffraction (WAXD) measurements of the average spacing between adjacent polymer chains. The para connected polyimide showed significant increases in permeability relative to a series of polyimides studied earlier with less packing-disruptive substituents on the polymer backbone. The permeability of the higher flux material was 64 barrers for CO₂ and 16 barters for O₂. The meta connected polyimide showed large decreases in permeability with corresponding increases in permselectivity when compared to its para counterpart. For example, the permselectivity of the meta material for O₂ relative to N₂ is 6.9 which is 50% greater than that of the para connected material. The differences in permeability and permselectivity are due to both penetrant solubility and diffusivity effects.     

Synthetic utility of 4-bromo-2,3,5,6-tetrafluoropyridine

The regiochemistry of nucleophilic substitution of 4-bromo-2,3,5,6-tetrafluoropyridine has been investigated. Efficient, regioselective reactions occur with alkylamine, benzylamine and alkoxide nucleophiles, yielding products where substitution occurs ortho to the ring nitrogen. The resulting 2-substituted-4-bromo-3,5,6-trifluoropyridines can be functionalised further, either by a second regioselective nucleophilic displacement or palladium catalysed elaboration at the 4-position. Reactions with aromatic N-nucleophiles yield mixtures of ortho- and para-substituted products.