Fluorescence polarization spectroscopy in protein analysis

Information about concentration, molecular structure, binding events, and motion can be obtained using fluorescence spectroscopy methods. Fluorescence polarization spectroscopy is one such method, which studies the relationship between the polarization of light that is used for excitation and light that is subsequently detected from fluorescence. The extent of change of polarization between excitation and emission can be used to study physical processes such as rotational diffusion, extent of denaturation, and orientation at surfaces. In this article Mann and Krull describe the underlying principles to the technique and show how fluorescence polarization spectroscopy has contributed to protein analysis.     

Dependence of the optical saturation of fluorescence on rotational diffusion

Optical saturation of fluorescence is studied taking into account the effect of rotational diffusion of molecules. It is shown that if the rotational diffusion time adopts values on the order of the fluorescence lifetime, optical saturation of the fluorescence increasingly deviates from the classical saturation curve towards lower fluorescence intensity values.     

Denaturation of human serum albumin under the action of cetyltrimethylammonium bromide according to fluorescence polarization data of protein

Denaturation of human serum albumin (HSA) under the action of cationic detergent cetyltrimethylammonium bromide (CTAB) is studied at different pH values by estimating the rotational diffusion of protein via fluorescence polarization. The degree of polarization of HSA tryptophan fluorescence, the rotational relaxation time, the rotational diffusion coefficient and the effective Einstein radius of the HSA molecules in solutions with different CTAB concentrations at different pH values are determined. The obtained rotational diffusion parameters of the HSA molecules show that under the action of CTAB, HSA denaturation has a one-stage character and proceeds more intensely and effectively at pH values higher than the pI value of protein (4.7).     

Rotational diffusion of fluorescein family markers in solutions of human serum albumin

Rotational diffusion of fluorescein family nanomarkers (initial fluorescein and its halogenated derivatives, eosin and erythrosine) in solutions of human serum albumin (HSA) was studied at various pH values. In solutions of HSA, the degree of fluorescence polarization, rotational relaxation time, and Einstein radius of nanomarkers are larger and the rotational diffusion coefficient of nanomarkers smaller than in solutions without the protein. An increase in the electronegativity of atoms in the structural formulas of nanomarkers increases the degree of polarization of their fluorescence, decreases the coefficient of their rotational diffusion, and increases rotational relaxation time and the effective Einstein radius.     

Dynamics of 4-benzylamino-7-nitrobenzofurazan in the 1-propanol/water binary solvent system. Evidence for composition-dependent solvent organization

We report on the fluorescence lifetime and rotational diffusion dynamics of 4-benzylamino-7-nitrobenzofurazan (BBD) in a series of 1-propanol/water binary solvent systems. The fluorescence lifetime of BBD increases monotonically with increasing 1-propanol concentration. The rotational diffusion dynamics of BBD also vary with solution 1-propanol content, but this variation is not monotonic. Comparison of the BBD rotational diffusion time constant to solution viscosity and 1-propanol composition reveals the presence of a solution composition dependence of solvent-solute interactions, with a relative decrease in solvent-solute interaction strength for solvent system compositions where the 1-propanol/water azeotrope is known to exist. These data point collectively to the existence of microscopic heterogeneity in these binary solvent systems.     

Compartmental modeling of reversible intermolecular two-state excited-state processes coupled with rotational diffusion or with added quencher

Analysis of related time-resolved fluorescence measurements can possibly lead to the determination of the kinetic parameters of excited-state processes. A deterministic identifiability analysis on an error-free fluorescence decay data surface has to be executed to verify whether the parameters of a particular model can be determined and may point to the minimal experimental conditions under which this will become possible. In this work, similarity transformation is chosen as an identifiability analysis approach because it also gives the explicit relationships between the true and alternative model parameters. Results are presented for two kinetic models of a reversible intermolecular two-state excited-state process in isotropic environments: (a) with coupled species-dependent rotational diffusion described by Brownian reorientation and (b) with added quencher. For model a, both spherically and cylindrically symmetric rotors, with no change in the principal axes of rotation in the latter, are considered. The fluorescence delta-response functions I(parallel)(t) and I(perpendicular)(t), for fluorescence polarized respectively parallel and perpendicular to the electric vector of linearly polarized excitation, are used to define the sum S(t) = I( parallel)(t) + 2 I( perpendicular)(t) and the difference D(t) = I(parallel)(t) - I(perpendicular)(t) function. The identifiability analysis is carried out using the S(t) and D(t) functions. The analysis involving S(t) shows that two physically acceptable possible solutions for the overall rate constants of the excited-state process exist. Inclusion of information from polarized fluorescence measurements on the rotational kinetic behavior contained in D(t) results in the unique set of rate constants and rotational diffusion coefficients when the rotational diffusion coefficients are different. For model b, it is shown that addition of quencher plays formally the same role as rotational diffusion as far as the identification is concerned. When the quenching rate constants are different, the rate constants of a reversible intermolecular two-state excited-state process with added quencher can be uniquely determined.     

Rotational and translational diffusion of peptide-coated CdSe/CdS/ZnS nanorods studied by fluorescence correlation spectroscopy

CdSe/CdS/ZnS nanorods (NRs) of three aspect ratios were coated with phytochelatin-related peptides and studied using fluorescence correlation spectroscopy (FCS). Theoretical predictions of the NRs' rotational diffusion contribution to the correlation curves were experimentally confirmed. We monitored rotational and translational diffusion of NRs and extracted hydrodynamic radii from the extracted diffusion constants. Translational and rotational diffusion constants (D(trans) and D(rot)) for NRs were in good agreement with Tirado and Garcia de la Torre's as well as with Broersma's theories when accounting for the ligand dimensions. NRs fall in the size range where rotational diffusion can be monitored with higher sensitivity than translational diffusion due to a steeper length dependence, D(rot) approximately L(-)(3) versus D(trans) approximately L(-)(1). By titrating peptide-coated NRs with bovine serum albumin, we monitored (nonspecific) binding through rotational diffusion and showed that D(rot) is an advantageous observable for monitoring binding. Monitoring rotational diffusion of bioconjugated NRs using FCS might prove to be useful for observing binding and conformational dynamics in biological systems.     

Picosecond time-resolved fluorescence study on solute-solvent interaction of 2-aminoquinoline in room-temperature ionic liquids: aromaticity of imidazolium-based ionic liquids

Time-resolved fluorescence spectra and fluorescence anisotropy decay of 2-aminoquinoline (2AQ) have been measured in eight room-temperature ionic liquids, including five imidazolium-based aromatic ionic liquids and three nonaromatic ionic liquids. The same experiments have also been carried out in several ordinary molecular liquids for comparison. The observed time-resolved fluorescence spectra indicate the formation of pi-pi aromatic complexes of 2AQ in some of the aromatic ionic liquids but not in the nonaromatic ionic liquids. The fluorescence anisotropy decay data show unusually slow rotational diffusion of 2AQ in the aromatic ionic liquids, suggesting the formation of solute-solvent complexes. The probe 2AQ molecule is likely to be incorporated in the possible local structure of ionic liquids, and hence the anisotropy decays only through the rotation of the whole local structure, making the apparent rotational diffusion of 2AQ slow. The rotational diffusion time decreases rapidly by adding a small amount of acetonitrile to the solution. This observation is interpreted in terms of the local structure formation in the aromatic ionic liquids and its destruction by acetonitrile. No unusual behavior upon addition of acetonitrile has been found for the nonaromatic ionic liquids. It is argued that the aromaticity of the imidazolium cation plays a key role in the local structure formation in imidazolium-based ionic liquids.     

Modulated anisotropy fluorescence for quantitative determination of carbaryl and benomyl

Two individual components in mixtures have been resolved by frequency domain fluorescence technique by measuring the observable quantities which characterize the anisotropy decay; differential anisotropy phase and modulated anisotropy ratio (MAR), which in turn are related to the rotational correlation time. The method presented here is capable of directly resolving binaries mixtures of fluorophores on the basis of differences in their rotational diffusion rates. Our results demonstrate that modulation anisotropy ratio measurements can be used for quantitative determination of small analytes, carbaryl and benomyl, having identical or nearly identical fluorescence spectra. This methodology can be applied with good results when the fluorophores have a suitable MAR difference.     

Self-diffusion of rodlike and spherical particles in a matrix of charged colloidal spheres: a comparison between fluorescence recovery after photobleaching and fluorescence correlation spectroscopy

The fluorescence recovery after photobleaching (FRAP) method and the fluorescence correlation spectroscopy (FCS) have been applied on suspensions of highly charged colloidal spheres with a small content of rod-shaped tobacco mosaic virus (TMV) particles. Since these methods only determine the self-diffusion coefficient of the fluorescently labeled species, D(S) of the rods and the spheres could independently be measured. The ionic strength of the dispersion medium has been varied to measure self-diffusion of rods and spheres in dependence on the degree of order of the matrix spheres. In contrast to FRAP, which allows the determination of the long-time self-diffusion coefficient D(S) (L), FCS measures self-diffusion on a shorter time scale. Thus a comparison of the results that were obtained by FCS and FRAP, in combination with Brownian Dynamics simulations, gives insight into the time dependence of the self-diffusion coefficient of an interacting colloidal system. As the mean interparticle distance of the matrix is of the same order of magnitude as the length of a TMV rod, the rotational motion is influenced by the assembly of spheres around a TMV particle. Since FCS is sensitive both to translational and rotational motion, whereas FRAP, which probes the diffusion at much larger length scales, is only sensitive to the translational motion of TMV, the comparison of diffusion coefficients measured employing FRAP and FCS can give some insights in the rotational diffusion: the experimental data indicate a slowing down of the rotational motion of a TMV rod with increasing structural order of the matrix spheres.     

On the origin of the dynamic Stokes shift of Laurdan molecules in lipid membranes

Frequency-resolved time correlated single photon counting experiments have been performed to investigate the time scales and molecular mechanisms for solvation dynamics of 6-dodecanoyl-2-dimethylaminonaphthalene (Laurdan) embedded in liquid-crystalline bilayers of unilamellar dimyristoyl-phosphatidylcholine (DMPC) vesicles. The reconstructed fluorescence spectra as a function of time exhibit a pronounced double-exponential Stokes shift, which is strongly correlated with the rotational diffusion dynamics of the chromophore as evidenced by experiments on transient fluorescence depolarization.     

Diffusivity of asphaltene molecules by fluorescence correlation spectroscopy

Using fluorescence correlation spectroscopy (FCS) we measure the translational diffusion coefficient of asphaltene molecules in toluene at extremely low concentrations (0.03-3.0 mg/L): where aggregation does not occur. We find that the translational diffusion coefficient of asphaltene molecules in toluene is about 0.35 x 10(-5) cm(2)/s at room temperature. This diffusion coefficient corresponds to a hydrodynamic radius of approximately 1 nm. These data confirm previously estimated size from rotational diffusion studied using fluorescence depolarization. The implication of this concurrence is that asphaltene molecular structures are monomeric, not polymeric.     

Green fluorescent protein in inertially injected aqueous nanodroplets

We inertially inject and study the contents of optically trappable aqueous nanodroplets (hydrosomes) emulsified in a perfluorinated matrix. A new piezoelectric actuated device for production of single hydrosomes on demand is introduced. Hydrosomes containing enhanced green fluorescent protein (EGFP) were injected, optically trapped, and held at the focus of an excitation laser in a confocal microscope, and single-molecule photobleaching events were observed. The rotational diffusion time of EGFP in trapped hydrosomes was measured using time-resolved fluorescence anisotropy. In free solution, the mean rotational diffusion time was determined to be 13.8 +/- 0.1 ns at 3 microM and 14.0 +/- 0.2 ns at 10 microM. In hydrosomes, the mean rotational diffusion time was similar and determined to be 12.6 +/- 1.0 ns at 3 microM and 15.5 +/- 1.6 ns at 10 microM. We conclude that the rotational motion inside the nanodroplets is consistent with rotation in free solution and that the protein therefore does not aggregate at the water-oil interface. Protein can be confined in hydrosomes with high efficiency using this technique, which provides an alternative to surface attachment or lipid encapsulation and opens up new avenues of research using single molecules contained in fluid nanovolumes.     

Separating the contribution of translational and rotational diffusion to protein association

The association of two proteins is preceded by a mutual diffusional search in solution. The role of translational and rotational diffusion in this process has been studied theoretically for many years. However, systematic experimental verification of theoretical results is still lacking. We report here measurements of association rates of the proteins beta-lactamase (TEM) and beta-lactamase inhibitor protein (BLIP) in solutions of glycerol and poly(ethylene glycol) of increasing viscosity. We also measured translational and rotational diffusion in the same solutions, using fluorescence correlation spectroscopy and fluorescence anisotropy, respectively. It is found that in glycerol both translational and rotational diffusion rates are inversely dependent on viscosity, as predicted by the classical Stokes-Einstein relations, while the association rate depends nonlinearly on viscosity. In contrast, the association rate depends only weakly on the viscosity of the polymer solutions, which results in a similar weak dependence of k(on) on viscosity. The data are modeled using the theory of diffusion-limited association. Deviations from the theory are explained by a short-range solute-induced repulsion between the proteins in glycerol solution and an attractive depletion interaction generated by the polymers. These results open the way to the creation of a unified framework for all nonspecific effects involved in the protein association process, as well as to better theoretical understanding of these effects. Further, they reflect on the complex factors controlling protein association within the crowded environment of cells and suggest that a high concentration of macromolecules does not significantly impede protein association.     

Rotational diffusivity of fractal clusters

The rotational diffusion behavior of fractal clusters generated through an off-lattice cluster-cluster aggregation algorithm in both diffusion-limited cluster aggregation and reaction-limited cluster aggregation conditions is investigated. The extended Kirkwood-Riseman theory (Garcia de la Torre et al., Macromolecules, 1987) is used to estimate the cluster rotational diffusion tensor. The three eigenvalues of this tensor, which correspond to the three main rotational diffusivity values of the cluster, have been computed for each generated cluster. Once the eigenvalues have been sorted in ascending order, each of them has been averaged over several thousands of clusters. It is found that one of the three main average rotational diffusivities is substantially larger than the other two, indicating significant anisotropy of fractal clusters. Moreover, a rotational hydrodynamic radius Rh,r has been determined on the basis of the mean value of the three average rotational diffusivities, which is about 25% larger than the mean translational hydrodynamic radius Rh calculated through the same Kirkwood-Riseman theory. Finally, the obtained Rh,r values have been applied to interpret dynamic light scattering data from aggregating colloidal systems and to investigate the reliability of the assumption, Rh = Rh,r, typically made in the literature.     

Fluorescence and intersystem crossing as a function of rotational energy on the S1 state of benzene

The effect of rotational excitation on the electronic relaxation of the S₁ state of “isolated” benzene has been studied by examination of resonance fluorescence generated when narrow-band exciting light is swept through the rotational envelopes of four S₁ ← S₀ absorption bands. To within the ten percent uncertainty in measurement, the fluorescence yields are independent of the position of the exciting light within an absorption band. Thus neither radiative decay nor intersystem crossing to the triplet state displays large sensitivity to molecular rotation, at least when excited state relaxation proceeds from rotational distributions of moderate diversity.     

PICOSECOND RESOLUTION OF INDOLE ANISOTROPY DECAYS AND SPECTRAL RELAXATION BY 2 GHz FREQUENCY-DOMAIN FLUOROMETRY

Abstract— We used frequency-domain fluorescence spectroscopy to measure rotational diffusion and time-resolved emission spectra of indole in methanol on the picosecond timescale. The indole emission was quenched by acrylamide to allow measurements to the instrumental limit of 2 GHz and to eliminate emission from the longer-lived indole molecules, which can no longer provide information on the picosecond (ps) processes. The resolution was adequate to measure rotational correlation times as short as 8 ps at 80†C, and spectral relaxation times as short as 16 ps at 5†C.     

Anisotrophy of rotational diffusion of excited molecules in solution

The principal values of the rotational diffusion tensor of perylene and 9,10-dimethylanthracene in ethanol are evaluated from temperature-dependence measurements of the degree of fluorescence polarization upon exciting the molecules into two perpendicularly polarized transitions.     

Fluorescent monodisperse silica ellipsoids for optical rotational diffusion studies

We report on the preparation of monodisperse, fluorescent hematite-silica core-shell ellipsoids, with adjustable shapes ranging from spindles to nearly spheres, that are suitable for optical rotational diffusion studies. Hematite cores are grafted with poly(vinylpyrrolidone) which ensures colloidal stability during the silica coating provided by the base-catalyzed hydrolysis and polymerization of tetraethoxysilane. Using tetramethylammonium hydroxide as base instead of the volatile ammonia facilitates continuous seeded growth of silica to colloids with a desired aspect ratio. A convenient feature of the hematite-silica particles is the rapid dissolution of the iron oxide core by acid, producing hollow silica ellipsoids that can be optically matched to near transparency. The control of shape and size of the silica ellipsoids, their optical properties, and the fairly high yield in comparison to other preparation methods for nonspherical model colloids make the ellipsoids very suitable for quantitative studies. As a case in point, we have measured the rotational diffusion coefficient of fluorescent ellipsoids with rotational fluorescence recovery after photobleaching. Dye-labeled ellipsoids can be imaged with confocal microscopy.     

Diffusion in a sol-gel-derived medium with a view toward biosensor applications

Time-resolved fluorescence anisotropy and fluorescence recovery after photobleaching were applied to study the diffusion of dyes and a fluorescence-labeled enzyme in a sol-gel-derived medium. This type of medium exhibits attractive properties such as robustness, low processing temperature, high porosity, large internal surface area, and can act as protective immobilization media for biologically active molecules. This makes it a suitable candidate for biosensor applications. The glasslike nature and good optical quality allows for light addressable entities to be incorporated and accessed using spectroscopy. This type of matrix, once formed, can be anything from an ordered gel to a robust glassy block depending on the aging process. In this work we apply confocal microscopy and time-resolved fluorescence techniques to study both rotational and lateral diffusion with aging time within a silica sol-gel derived monolith. An enzyme, horseradish peroxidase, was labeled with Alexa Fluor 488 and rotation related to both the enzyme and the probe monitored during the matrix aging process. Diffusion coefficients of between ca. 0.5 x 10(-7) and 4 x 10(-7) cm2 s(-1) were obtained from preliminary FRAP measurements of fluorescein and correlated to differences in the catalytic activity of HRP incorporated in the monolith.