Use of the ionic liquid 1-butyl-3-methylimidazolium hexafluorophosphate in countercurrent chromatography

Room temperature ionic liquids (RTIL) are molten salts that are liquids at room temperature. Their liquid state makes them possible candidates as solvents in countercurrent chromatography (CCC), which uses solvents as both the mobile and stationary phases. The study focuses on 1-butyl-3-methylimidazolium hexafluorophosphate (BMIM PF₆), an easy to synthesize and purify RTIL whose melting point is –8°C. It is shown that BMIM PF₆ behaves like a solvent of significant polarity (comparable with that of ethanol). The ternary phase diagram water–acetonitrile–BMIM PF₆ is given, because it was necessary to add acetonitrile to reduce the ionic liquid viscosity. The 40:20:40% w/w water–acetonitrile–BMIM PF₆ biphasic liquid system was found to be appropriate as a biphasic liquid system for CCC. Different aromatic solutes, including bases, acids, and neutral compounds, were injected into the CCC column to estimate their distribution constants between the ionic liquid-rich phase and the aqueous phase. The resulting K_il/w constants were compared with the corresponding literature octanol–water partition coefficients, K_o/w. The important drawbacks in the use of RTIL in CCC are clearly pointed out: high viscosity producing pressure build-up, UV absorbance limiting the use of the convenient UV detector, and non-volatility precluding the use of the evaporative light-scattering detector for continuous detection.     

甲醇对1-丁基-3-甲基咪唑四氟硼酸离子液体结构与性质影响的模拟研究

采用分子动力学模拟方法研究了298.15 K、0.1 MPa下摩尔分数为0.1-0.9 的甲醇对1-丁基-3-甲基咪唑四氟硼酸盐([BMIM][BF₄])结构与性质的影响. 获得了体系的密度、径向分布函数、配位数、自扩散系数、粘度和电导率, 模拟得到的密度值与实验值符合较好. 结果显示: 体系各组分之间的径向分布函数随甲醇摩尔分数的增加呈规律性变化; 体系内阴阳离子的自扩散系数随着甲醇摩尔分数的增加不断增大; 甲醇的加入削弱了阴阳离子之间的相互作用, 体系粘度随着甲醇摩尔分数的增加逐渐减小, 电导率不断增大. 分析空间分布函数得到体系中各组分的三维空间分布情况.     

Evidence of change in the molecular organization of 1-n-butyl-3-methylimidazolium tetrafluoroborate ionic liquid solutions with the addition of water

Physico-chemical properties of ionic liquids like density, viscosity, conductivity, surface tension and excess molar volume are strongly dependent on their concentration in aqueous solutions. 1-n-Butyl-3-methylimidazolium tetrafluoroborate/water solutions, at 25 °C, shows two clearly distinguished behaviors, corresponding to a water-rich and a salt-rich region, with distinct physico-chemical properties. It is shown that [BMIm][BF₄] exhibits surfactant properties. The results obtained are discussed in terms of the interactions between cations and anions of the ionic liquid and the water molecule. IR studies show that the addition of water modifies the organization of the ionic liquid molecules. The data collection reported is helpful for a variety of different technological applications and in particular for electrochemical applications, as capacitors, batteries and fuel cells among others.     

Room temperature ionic liquid as a novel medium for liquid/liquid extraction of metal ions

Room temperature ionic liquids (RTILs) have been used as novel solvents to replace traditional volatile organic solvents in organic synthesis, solvent extraction, and electrochemistry. The hydrophobic character and water immiscibility of certain ionic liquids allow their use in solvent extraction of hydrophobic compounds. In this work, a typical room temperature ionic liquid, 1-butyl-3-methylimidazolium hexafluorophosphate [C₄mim][PF₆], was used as an alternative solvent to study liquid/liquid extraction of heavy metal ions. Dithizone was employed as a metal chelator to form neutral metal-dithizone complexes with heavy metal ions to extract metal ions from aqueous solution into [C₄mim][PF₆]. This extraction is possible due to the high distribution ratios of the metal complexes between [C₄mim][PF₆] and aqueous phase. Since the distribution ratios of metal dithiozonates between [C₄mim][PF₆] and aqueous phase are strongly pH dependent, the extraction efficiencies of metal complexes can be manipulated by tailoring the pH value of the extraction system. Hence, the extraction, separation, and preconcentraction of heavy metal ions with the biphasic system of [C₄mim][PF₆] and aqueous phase can be achieved by controlling the pH value of the extraction system. Preliminary results indicate that the use of [C₄mim][PF₆] as an alternate solvent to replace traditional organic solvents in liquid/liquid extraction of heavy metal ions is very promising.     

1-Butyl-3-methylimidazolium-based ionic liquids and an anionic surfactant: Excellent background electrolyte modifiers for the analysis of benzodiazepines through capillary electrophoresis

In this study, we found that adding 1-butyl-3-methylimidazolium-based ionic liquids (ILs) and sodium dodecyl sulfate (SDS) as modifiers in the background electrolyte (BGE) for capillary electrophoresis enhanced the separation of benzodiazepines. In particular, 1-butyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide ([BMIM][NTf₂]) was the best IL additive for the separation system because its anionic moiety interacted favorably with the benzodiazepines. We added SDS because of its known effect on the separation of hydrophobic analytes. We optimized the separation conditions in terms of the concentrations of the IL, SDS, and organic solvent, the pH, and the BGE's ionic strength. The optimal BGE, containing 170 mM [BMIM][NTf₂] and 10 mM SDS, provided baseline separation, high efficiency, and satisfactory peak shapes for the benzodiazepines. The separation mechanism was based on heteroassociation between the anionic moiety of the IL and the benzodiazepines, with SDS improving the resolution of the separation. The limits of detection for the seven analytes ranged from 2.74 to 4.42 μg/mL. We subjected a urine sample to off-line solid phase extraction (SPE) prior to the analysis of its benzodiazepine content. Our experimental results reveal that the combination of [BMIM][NTf₂] and SDS provides adequate separation efficiency for its application to CE analyses of benzodiazepines after SPE concentration.     

MgSiO3状态方程的分子动力学模拟

The equation of state of MgSiO3 perovskite under high pressure and high temperature is simulated using the molecular dynamics method. It was found that the molecular dynamics simulation is very successful in accurately reproducing the measured molar volumes of MgSiO3 perovskite over a wide range of temperatures and pressures. The simulated equation of state of MgSiO3 perovskite matched experimental data at up to 140GPa at 300 K, as well as the fitting data of others and results from the first-principles simulation based on the local density approximation. The simulated equations of state of MgSiO3 perovskite at higher temperatures and higher pressures also correspond to the other calculations. In addition, the volume compression data of MgSiO3 perovskite is simulated up to 120 GPa at 300, 900, 2000 and 3000 K, respectively.     

Synthesis of ionic liquid intercalated layered double hydroxides of magnesium and aluminum: A greener catalyst of Knoevenagel condensation

Due to their structural merits that arise from their stability and high surface area, the layered double hydroxide (LDH) materials have caused strong attention. These characteristics provided intriguing possibilities with improved efficiency for catalytic applications. In this work, the preparation of 1-butyl-3-methylimidazolium hydroxide ([BMIM]⁺OH⁻) intercalated by a facile approach in a layered double hydroxide (LDH) matrix is reported and its implementation as a greener catalyst is shown. Different physico-chemical techniques such as XRD, FTIR, TGA, and N₂-physisorption, HRTEM, and CO₂ adsorption are implemented to characterize the structure of the fabricated catalysts. The [BMIM]⁺OH⁻/LDH exhibit outstanding catalytic performance in Knoevenagel condensation, resulting from the high LDH surface area and synergistic effects between both the intercalated ionic liquid and LDHs matrix. Knoevenagel’s fabricated catalysts can be exploited to catalyze different condensations and can be reused well. This work therefore generates good opportunities in the field of catalysis for the preparing and implementation of LDH-based catalysts.     

Enrichment and sensitive determination of dichlorodiphenyltrichloroethane and its metabolites with temperature controlled ionic liquid dispersive liquid phase microextraction prior to high performance liquid phase chromatography

Dichlorodiphenyltrichloroethane (DDT) and its main metabolites are important environmental pollutants and have been in the focusing center. It is of great value to develop simple, rapid, sensitive and easy to operate method for monitoring them. Present work established a novel temperature controlled ionic liquid dispersive liquid phase microextraction method in combination with high performance liquid chromatography for the enrichment and determination of DDT and its metabolites. Proposed method used only ionic liquid 1-hexyl-3-methylimidazolium hexafluorophosphate ([C₆MIM][PF₆]) for the enrichment and overcame the demerits of conventional single drop liquid phase microextraction and dispersive liquid-liquid microextraction. Temperature has two functions here, one is to promote the dispersing of ionic liquid into the solution and forming infinitesimal micro-drop and increasing the chance of the analytes extracted into ionic liquid phase, and the other one is to perform phase-separation. A series of factors that would affect the extraction performance was systematically investigated and optimized. The experimental results indicated that the detection limits obtained for p,p′-DDD, p,p′-DDT, o,p′-DDT and p,p′-DDE were 0.24, 0.24, 0.45, 0.24 ng mL⁻¹, respectively. The linear ranges for them were from 1.0 to 100 ng mL⁻¹, and the precisions were between 3.8% and 6.7% (n = 6). The proposed method was validated with four real-world samples and excellent results were achieved.     

Lithium hydroxide phase transition under high pressure: an ab initio molecular dynamics study.

The high-pressure phase transition in the deuterated lithium hydroxide crystalline state has been studied by Car-Parrinello molecular dynamics simulations, in the constant-pressure, constant-temperature ensemble. The recently developed metadynamics approach has been applied to encourage the system to transform into different phases in an affordable simulation time. A previously not completely characterized high-pressure phase has been obtained. The structural and spectroscopic properties have been studied and compared with the neutron scattering, infrared and Raman measurements. It has been found that the calculated structure differs slightly from the experimental hypothesis, and that the presence of strong hydrogen bonds is the source of the red shift and of the characteristic features of the OD-stretching bands in both IR and Raman spectra.     

基于分子对接的thanatin与NDM-1分子动力学模拟研究

耐碳青霉烯类抗生素的超级细菌给人类健康带来了严重威胁,其所携带的金属 β-内酰胺酶编码基因是耐药性的主要来源。NDM-1作为其中传播最广、活性最强的 β-内酰胺酶,其抑制剂的研发刻不容缓。具有广谱作用的抗菌肽thanatin对NDM-1展现出了较好的抑制效果,但抑制机理并不清楚。本文使用HPEPDOCK与Rosetta FlexPepDock服务器,将thanatin与NDM-1进行了分子对接,并使用Desmond软件包对对接模型进行了分子动力学模拟。结果表明,thanatin与NDM-1活性中心的Zn2+ 并无直接相互作用,而作为竞争性抑制剂结合于NDM-1的活性口袋,阻止抗生素分子进入活性口袋与Zn2+ 结合,从而抑制NDM-1的水解活性。本文为研发有效的NDM临床抑制剂探索了可行的方法。     

Electrode polarization effects on interfacial kinetics of ionic liquid at graphite surface: An extended lagrangian-based constant potential molecular dynamics simulation study

Computational models including electrode polarization can be essential to study electrode/electrolyte interfacial phenomena more realistically. We present here a constant-potential classical molecular dynamics simulation method based on the extended Lagrangian formulation where the fluctuating electrode atomic charges are treated as independent dynamical variables. The method is applied to a graphite/ionic liquid system for the validation and the interfacial kinetics study. While the correct adiabatic dynamics is achieved with a sufficiently small fictitious mass of charge, static properties have been shown to be almost insensitive to the fictitious mass. As for the kinetics study, electrical double layer (EDL) relaxation and ion desorption from the electrode surface are considered. We found that the polarization slows EDL relaxation greatly whereas it has little impact on the ion desorption kinetics. The findings suggest that the polarization is essential to estimate the kinetics in nonequilibrium processes, not in equilibrium. © 2019 Wiley Periodicals, Inc.     

Modeling of high-pressure vapor–liquid equilibrium in ionic liquids + gas systems using the PRSV equation of state

Ionic liquids are environmentally friendly solvents composed of large organic cations and relatively small inorganic anions, whose melting point is below T = 373.15 K. This is an arbitrary limit defined in order to organize the dramatically increasing number of possible applications in chemical processes. These compounds are regarded as potentially environmentally benign solvents due to their almost negligible vapor pressure, which essentially eliminates emission to the atmosphere; besides, they present a wide range of liquid existence. Ionic liquids are applicable in separation processes, such as recovery of valuable products and remotion of polluting agents in effluents 1, 2, 3 and 4 and are a new and exciting class of compounds that have the potential to overcome many of the problems associated with current CO₂-capture techniques. In this work, high-pressure vapor–liquid equilibrium (VLE) of 17 binary mixtures ionic liquid + gas has been modeled with the Peng–Robinson/Stryjek–Vera (PRSV) 5 and 6 equation of state (EoS) applying the Wong–Sandler (WS) [7] mixing rules, including the van Laar (VL) model for the excess Gibbs free energy [8] for the gamma–phi approach and the one-fluid van der Waals (VDW) mixing rules for the phi–phi approach. Critical properties and acentric factor of ionic liquids [pmim][Tf₂N] and [hmmim][Tf₂N] were determined using the extended group contribution method by Lydersen–Joback–Reid [9], while, for the other ionic liquids, these properties are available in the literature 10 and 11. Experimental data were obtained from literature 12, 13, 14, 15, 16, 17 and 18 and the adjustable parameters were fitted by minimizing the errors between predicted and experimental bubble pressure. van Laar and binary interaction parameters were regarded as temperature-dependent. The results, in terms of main deviations between experimental and calculated pressures for the 17 binary systems, are reasonably satisfactory (3.62% and 2.59% for the gamma–phi and phi–phi approaches, respectively).     

Local elevation: A method for improving the searching properties of molecular dynamics simulation

Summary The concept of memory has been introduced into a molecular dynamics algorithm. This was done so as to persuade a molecular system to visit new areas of conformational space rather than be confined to a small number of low-energy regions. The method is demonstrated on a simple model system and the 11-residue cyclic peptide cyclosporin A. For comparison, calculations were also performed using simulated temperature annealing and a potential energy annealing scheme. Although the method can only be applied to systems with a small number of degrees of freedom, it offers the chance to generate a multitude of different low-energy structures, where other methods only give a single one or few. This is clearly important in problems such as drug design, where one is interested in the conformational spread of a system.     

A molecular dynamics simulation study of peptide deformylase from Leptospira interrogans complex：Exploring the closing mechanism of the substrate pocket

To explore the closing mechanism of the substrate pocket,we perform a 16,000 ps molecular dynamics simulation separately on the ligand-free and actinonin-bound peptide deformylase from Leptospira interrogans.Our results show that the CD-loop, hydrophilic inhibitor and hydrophobic cluster are necessary for the formation of semi-open conformation,and Tyr71 plays an important role in mediating the movements of CD-loop.The average MD structure of the actinonin-bound LiPDF complex approaches to the crystal structure.These are consistent with experiment very well.     

High-pressure densities and derived volumetric properties (excess, apparent, and partial molar volumes) of binary mixtures of {methanol (1) + [BMIM][BF4] (2)}

The density of seven {(0.0087, 0.0433, 0.1302, 0.2626, 0.4988, 0.7501, and 0.9102) mole fraction of [BMIM][BF₄]} binary {methanol (1) + [BMIM][BF₄] (2)} (1-butyl-3-methylimidazolium tetrafluoroborate) mixtures has been measured with a vibrating-tube densimeter. Measurements were performed at temperatures from (298 to 398) K and at pressures up to 40 MPa. The total uncertainties of density, temperature, pressure, and concentration measurements was estimated to be less than 0.15 kg · m⁻³, 15 mK, 5 kPa, and 10⁻⁴, respectively. The uncertainties reported in this paper are expanded uncertainties at the 95% confidence level with a coverage factor of k = 2. The effect of temperature, pressure, and concentration on the density and derived volumetric properties such as excess, apparent, and partial molar volumes was studied. The measured densities were used to develop a Tait-type equation of state for the mixture. The structural properties such as direct and total correlation function integrals and cluster size were calculated using the Krichevskii function concept and the equation of state for the mixture at infinite dilution.     

A novel glycosylation of inactive glycosyl donors using an ionic liquid containing a protic acid under reduced pressure conditions

The glycosylation of inactive glycosyl donors, such as methyl glycosides and 1-hydroxy sugars with nearly stoichiometric amounts of various alcohols (1.1 equiv) in an ionic liquid containing a protic acid (acid-IL) under reduced pressure conditions proceeded effectively to give the corresponding glycosides in good to high yields. Furthermore, the acid-IL could be reused for additional glycosylations without the loss of efficiency.     

Molecular orientation of monododecyl pentaethylene glycol at water/air and water/oil interfaces. A molecular dynamics computer simulation study

With a molecular dynamics computer simulation we investigated the dynamic properties of a monododecyl pentaethylene glycol (C₁₂E₅) molecule adsorbed at air/water and oil/water interfaces. In these simulations we investigated the molecular orientation of the surfactant molecules in detail. At the air/water interface the maximum of the C₁₂ chain tilt angle distribution measured with respect to the water surface is about 50°. This result is in fairly good agreement with neutron reflection experiments of monododecyl glycol ethers at the air/water interface. At the oil/water interface no significant changes were detected in the molecular orientation. We found that at equilibrium oil molecules penetrate into the hydrophobic monododecyl layer, this was also found by neutron reflection studies of the interactions between C₁₂E₅ and dodecane. The observed oil penetration results in an increase in the surface area per surfactant molecule. Received: 16 July 1999/Accepted in revised form: 28 August 1999     

A polarizable empirical force field for molecular dynamics simulation of liquid hydrocarbons

Electronic polarizability is usually treated implicitly in molecular simulations, which may lead to imprecise or even erroneous molecular behavior in spatially electronically inhomogeneous regions of systems such as proteins, membranes, interfaces between compounds, or mixtures of solvents. The majority of available molecular force fields and molecular dynamics simulation software packages does not account explicitly for electronic polarization. Even the simplest charge‐on‐spring (COS) models have only been developed for few types of molecules. In this work, we report a polarizable COS model for cyclohexane, as this molecule is a widely used solvent, and for linear alkanes, which are also used as solvents, and are the precursors of lipids, amino acid side chains, carbohydrates, or nucleic acid backbones. The model is an extension of a nonpolarizable united‐atom model for alkanes that had been calibrated against experimental values of the density, the heat of vaporization and the Gibbs free energy of hydration for each alkane. The latter quantity was used to calibrate the parameters governing the interaction of the polarizable alkanes with water. Subsequently, the model was tested for other structural, thermodynamic, dielectric, and dynamic properties such as trans/gauche ratios, excess free energy, static dielectric permittivity, and self‐diffusion. A good agreement with the experimental data for a large set of properties for each considered system was obtained, resulting in a transferable set of polarizable force‐field parameters for CH₂, CH₃, and CH₄ moieties. © 2014 Wiley Periodicals, Inc.     

Forging of nicotine for the effective management of diabetic wounds: A hybrid of scaffold hopping and molecular dynamics simulation approaches

Diabetic wound (DW) is a huge threat to the health care community and is always challenging to treat. The main biochemical culprits in DW recalcitrance are elevated inflammatory mediators, proteases, cell proliferation and migration suppressors, anti-angiogenic factors, and bacterial infections. In this scenario, using a scaffold to target important factors at each stage of pathogenesis can accelerate the healing process. Many shreds of evidence disclosed the role of nicotine scaffold in handling inflammation, infection, proliferation, migration, and angiogenesis. All these factors made us forge nicotine by employing a scaffold hopping approach. The hops were then subjected to molecular docking and binding free energy calculations against Matrix metallopeptidase 9, Glycogen synthase kinase 3 beta, Tumor necrosis factor alpha, MurC and ParE enzymes. Gratifyingly, molecule H1 was found to possess significant inhibitory activity against the selected receptors as evidenced by their high negative glide score and binding energy. Furthermore, 100 ns of molecular dynamics simulation studies (MD) was performed for the five H1/4XCT, H1/5F95, H1/2AZ5, H1/4C13 and H1/4MOT complexes to get insight into the binding modes and stability. The MD results showed significant stability as evidenced by the low conformational changes of the H1 with the chosen receptors. Hence, H1 might be a druggable candidate in the therapeutic management of DW. However, further research is strongly recommended to advance the drug into the therapeutic pipeline.     

CaF2熔化温度的分子动力学模拟

The molecular dynamics method has been applied to simulate the melting temperatures of CaF 2 at elevated temperature and high pressure and to calculate the P～V equation of state of CaF 2 up to 100 GPa at 300 K. The interatomic potential was taken to be the sum of pairwise additive Coulomb, van der Waals attractions, and repulsive interactions. In addition, the shell model was used in molecular dynamics simulation. The pressure dependence of the melting temperature of CaF 2 was predicted up to 4 GPa. However, in order to account for the superheating melting of the molecular dynamic simulation, the simulated melting temperatures of CaF 2 were corrected by the modern theory of melting. Consequently, the melting temperatures of CaF 2 were accurately obtained at elevated temperature and high pressure. Therefore, it is shown that shell model molecular dynamics simulation at constant pressure indeed provides a useful tool for studying the melting temperatures of other materials under high pressures.