Application of the dressed time-dependent density functional theory for the excited states of linear polyenes

Dressed Time-Dependent Density Functional Theory (Maitra et al., J Chem Phys 2004, 120, 5932) is applied to selected linear polyenes. Limits of validity of the approximation are briefly discussed. The implementation strategy is described. Results for the 2(1)B(u) and 2(1)A(g) states of selected linear polyenes are presented and compared with accessible experimental and theoretical results.     

Real-time time-dependent density functional theory using density fitting and the continuous fast multipole method

An implementation of real-time time-dependent density functional theory (RT-TDDFT) within the TURBOMOLE program package is reported using Gaussian-type orbitals as basis functions, second and fourth order Magnus propagator, and the self-consistent field as well as the predictor–corrector time integration schemes. The Coulomb contribution to the Kohn–Sham matrix is calculated combining density fitting approximation and the continuous fast multipole method. Performance of the implementation is benchmarked for molecular systems with different sizes and dimensionalities. For linear alkane chains, the wall time for density matrix time propagation step is comparable to the Kohn-Sham (KS) matrix construction. However, for larger two- and three-dimensional molecules, with up to about 5,000 basis functions, the computational effort of RT-TDDFT calculations is dominated by the KS matrix evaluation. In addition, the maximum time step is evaluated using a set of small molecules of different polarities. The photoabsorption spectra of several molecular systems calculated using RT-TDDFT are compared to those obtained using linear response time-dependent density functional theory and coupled cluster methods.     

X-ray emission and X-ray photoelectron studies of electron density distribution in Cu(II) complexes with 2-imidazoline nitroxides

Electron density distribution in Cu(II) complexes with 2-imidazoline nitroxides was investigated by X-ray emission and X-ray photoelectron spectroscopy. The structure of the highest occupied molecular orbital (HOMO) of the compounds is determined mainly by the interaction of the metal with the donor atoms of the ligands. Coordination of the nitroxide by the Cu(hfac)₂ acceptor matrix changes the shape of the CuL _α spectral line. The 3s X-ray photoelectron spectra provide evidence about the transfer of electron density to the copper atom in the complexes.     

聚集诱导发光分子的光电功能与器件应用

光电功能分子通常以薄膜和聚集体的形式显示功能, 聚集诱导发光（AIE）分子体系的发现为解决固态下聚集诱导荧光猝灭（ACQ）难题提供了新的思路. 本文总结了近年来本课题组发展的一系列AIE 分子, 侧重介绍这些AIE 分子的光电功能与器件应用, 特别是在有机电致发光器件和有机激光方面的应用. AIE 材料显示非常高的电致发光效率, 在显示与白光器件方面潜力巨大. 在发展电泵有机激光方面, AIE 材料特点突出, 是最有前景的一类材料.     

Prediction of spectroscopic constants for diatomic molecules in the ground and excited states using time-dependent density functional theory

Spectroscopic constants of the ground and next seven low-lying excited states of diatomic molecules CO, N2, P2, and ScF were computed using the density functional theory SAOP/ATZP model, in conjunction with time-dependent density functional theory (TD-DFT) and a recently developed Slater type basis set, ATZP. Spectroscopic constants, including the equilibrium distances r(e), harmonic vibrational frequency omega(e), vibrational anharmonicity omega(e)x(e), rotational constant B(e), centrifugal distortion constant D(e), the vibration-rotation interaction constant alpha(e), and the vibrational zero-point energy E(n)0 were generated in an effort to establish a reliable database for electron spectroscopy. By comparison with experimental values and a similar model with an established larger Slater-type basis set, et-QZ3P-xD, it was found that this model provides reliably accurate results at reduced computational costs, for both the ground and excited states of the molecules. The over all errors of all eight lowest lying electronic states of the molecules under study using the effective basis set are r(e)(+/-4%), omega(e)(+/-5% mostly without exceeding +/-20%), omega(e)x(e)(+/-5% mostly without exceeding 20%, much more accurate than a previous study on this constant of +/-30%), B(e)(+/-8%), D(e)(+/-10%), alpha(e)(+/-10%), and E(n)0(+/-10%). The accuracy obtained using the ATZP basis set is very competitive to the larger et-QZ3P-xD basis set in particular in the ground electronic states. The overall errors in r(e), omega(e)x(e), and alpha(e) in the ground states were given by +/-0.7, +/-10.1, and +/-8.4%, respectively, using the efficient ATZP basis set, which is competitive to the errors of +/-0.5, +/-9.2, and +/-9.1%, respectively for those constants using the larger et-QZ3P-xD basis set. The latter basis set, however, needs approximately four times of the CPU time on the National Supercomputing Facilities (Australia). Due to the efficiency of the model (TD-DFT, SAOP and ATZP), it will be readily applied to study larger molecular systems.     

Polarizable continuum model with the fragment molecular orbital-based time-dependent density functional theory

The polarizable continuum model (PCM) for describing the solvent effect was combined with the fragment molecular orbital-based time-dependent density functional theory (TDDFT). Several levels of the many-body expansion were implemented, and the importance of the many-body contributions to the singlet-excited states was discussed. To calibrate the accuracy, we performed a number of the model calculations using our method and the regular TDDFT in solution, applying them to phenol and polypeptides at the long-range corrected BLYP/6-31G* level. It was found that for systems up to 192 atoms the largest error in the excitation energy was 0.006 eV (vs. the regular TDDFT/PCM of the full system). The solvent shifts and the conformer effects were discussed, and the scaling was found to be nearly linear. Finally, we applied our method to the lowest singlet excitation of the photoactive yellow protein (PYP) in aqueous solution and determined the excitation energy to be in reasonable agreement with experiment. The excitation energy analysis provided the contributions of individual residues, and the main factors as well as their solvent shifts were determined.     

In-Situ/Operando X-ray Characterization of Metal Hydrides

In this article, the capabilities of soft and hard X-ray techniques, including X-ray absorption (XAS), soft X-ray emission spectroscopy (XES), resonant inelastic soft X-ray scattering (RIXS), X-ray photoelectron spectroscopy (XPS), and X-ray diffraction (XRD), and their application to solid-state hydrogen storage materials are presented. These characterization tools are indispensable for interrogating hydrogen storage materials at the relevant length scales of fundamental interest, which range from the micron scale to nanometer dimensions. Since nanostructuring is now well established as an avenue to improve the thermodynamics and kinetics of hydrogen release and uptake, due to properties such as reduced mean free paths of transport and increased surface-to-volume ratio, it becomes of critical importance to explicitly identify structure-property relationships on the nanometer scale. X-ray diffraction and spectroscopy are effective tools for probing size-, shape-, and structure-dependent material properties at the nanoscale. This article also discusses the recent development of in-situ soft X-ray spectroscopy cells, which enable investigation of critical solid/liquid or solid/gas interfaces under more practical conditions. These unique tools are providing a window into the thermodynamics and kinetics of hydrogenation and dehydrogenation reactions and informing a quantitative understanding of the fundamental energetics of hydrogen storage processes at the microscopic level. In particular, in-situ soft X-ray spectroscopies can be utilized to probe the formation of intermediate species, byproducts, as well as the changes in morphology and effect of additives, which all can greatly affect the hydrogen storage capacity, kinetics, thermodynamics, and reversibility. A few examples using soft X-ray spectroscopies to study these materials are discussed to demonstrate how these powerful characterization tools could be helpful to further understand the hydrogen storage systems.     

Recent applications of density functional theory calculations to biomolecules

The purpose of this overview is to highlight the broad scope and utility of current applications of density functional theory (DFT) methods for the study of the properties and reactions of biomolecules. This is illustrated using examples selected from research carried out within our research group and in collaboration with others. The examples include the hyperfine coupling constants of amino acid radicals, the use of an amino acid as a chiral catalyst for the formation of carbon–carbon bonds in the aldol reaction, hydrogen-bond mediated catalysis of an aminolysis reaction, radiation-induced protein–DNA cross-links, and the mechanism by which an antitumor drug cleaves DNA. We demonstrate that DFT-based methods can be applied successfully to a broad range of problems that remain beyond the scope of conventional electron-correlation methods. Furthermore, we show that contemporary computational quantum chemistry complements experiment in the study of biological systems. Received: 19 December 2001 / Accepted: 8 April 2002 / Published online: 4 July 2002     

Exploring odd-even effects of simple oligomer-like DRCNnT series: a study based on density functional theory/time-dependent density functional theory calculations

Odd-even effects of short-circuit current density and power conversion efficiency (PCE) are an interesting phenomenon in some organic solar cells. Although some explanations have been given, why they behave in such a way is still an open question. In the present work, we investigate a set of acceptor-donor-acceptor simple oligomer-like small molecules, named the DRCNnT (n = 5-9) series, to give an insight into this phenomenon because the solar cells based on them have high PCE (up to 10.08%) and show strong odd-even effects in experiments. By modeling the DRCNnT series and using density functional theory, we have studied the ground-state electronic structures of the DRCNnT (n = 5-9) series in condensed phase. The calculated results reproduce the experimental trends well. Furthermore, we find that the exciton-binding energies of the DRCNnT series may be one of the key parameters to explain this phenomenon because they also show odd-even effects. In addition, by studying the effects of alkyl branch and terminal group on odd-even effects of dipole moment, we find that eliminating one or two alkyl branches does not break the odd-even effects of dipole moments, but eliminating one or two terminal groups does. Finally, we conclude that removing one alkyl branch close to the terminal group of DRCN5T can decrease highest occupied molecular orbital (HOMO) energy (thus increasing open circuit voltage) and increase dipole moment (thus enhancing charge separation and short-circuit current). This could be a new and simple method to increase the PCE of DRCN5T-based solar cells.     

Theoretical studies on electronic spectroscopy and dynamics with the real-time time-dependent density functional theory

Time-dependent density functional theory (TDDFT) has evolved into a general routine to extract the energies of low-lying excited states over the last decades. Driven by the remarkable progress of laser technology, the study of the interaction between matter and intense laser fields with ultrashort pulse duration develops rapidly. A great number of new strong field phenomena emerge. The requirement of a theoretical tool to study the intense field phenomena and dynamical processes of polyatomic systems is urgent. To extend the power of the TDDFT beyond the linear responses, an alternative scheme has been developed by numerically solving the time-dependent Kohn-Sham equations directly in real-time domain. In this article, we summarize the algorithms and capabilities of the real-time TDDFTon studying electron spectroscopy and dynamics of polyatomic systems. The failure of TDDFT with the adiabatic localdensity approximation on some dynamical processes and the possible solutions are synopsized as well. The numerical implementation of algorithms and applications of RT-TDDFT on the linear and nonlinear spectroscopies and electronic dynamics of nano-size nonmetal clusters are displayed.     

An examination of density functional theories on isomerization energy calculations of organic molecules

Long-range corrected (LC) density functional theories (DFTs) were applied to the isomerization energy calculations of organic molecules to make clear why conventional DFTs including B3LYP have given poor isomerization reaction energies. Combining with local response dispersion (LRD) method, we performed LC-DFT calculations for the benchmark set of isomerization reactions. Consequently, we found that LC-DFT?+?LRD methods give accurate reaction energies equivalent to up-to-date DFTs containing many semi-empirical parameters. This result indicates that long-range exchange and intramolecular dispersion correlation interactions, which have been neglected in conventional DFTs, play prominent roles in isomerization reactions. However, we also found that these interactions are not sufficient to give accurate isomerization energies especially for cyclization reactions. Considering that Gaussian-attenuated LC-DFTs (LCgau-DFTs) give better isomerization reaction energies than LC-DFTs, we suggested that the isomerization energies will be further improved by correcting the short-range part of exchange functionals in DFT with keeping the whole long-range exchange interactions.     

X-ray crystal structure, Raman spectroscopy, and Ab initio density functional theory calculations on 1,1,3,3-tetramethylguanidinium bromide

The salt 1,1,3,3-tetramethylguanidinium bromide, [((CH(3))(2)N)(2)C═NH(2)](+)Br(-) or [tmgH]Br, was found to melt at 135(5) °C, forming what may be referred to as a moderate temperature ionic liquid. The chemistry was studied and compared with the corresponding chloride compound. We present X-ray diffraction and Raman evidence to show that also the bromide salt contains dimeric ion pair "molecules" in the crystalline state and probably also in the liquid state. The structure of [tmgH]Br determined at 120(2) K was found to be monoclinic, space group P2(1)/n, with a = 7.2072(14), b = 13.335(3), c = 9.378(2) ?, β =104.31(3)°, Z = 2, based on 11769 reflections, measured from θ = 2.71-28.00° on a small colorless needle crystal. Raman and IR spectra are presented and assigned. When heated, both the chloride and the bromide salts form vapor phases. The Raman spectra of the vapors are surprisingly alike, showing, for example, a characteristic strong band at 2229 cm(-1). This band was interpreted by some of us to show that the [tmgH]Cl gas phase should consist of monomeric ion pair "molecules" held together by a single N-H(+)···Cl(-) hydrogen bond, the stretching vibration of which should be causing the band, based on ab initio molecular orbital density functional theory type calculations. It is not likely that both the bromide and chloride should have identical spectra. As explanation, the formation of 1,1-dimethylcyanamide gas is proposed, by decomposition of [tmgH]X leaving dimethylammonium halogenide (X = Cl, Br). The Raman spectra of all gas phases were quite identical and fitted the calculated spectrum of dimethylcyanamide. It is concluded that monomeric ion pair "molecules" held together by single N-H(+)···X(-) hydrogen bonds probably do not exist in the vapor phase over the solids at about 200-230 °C.     

Electronic structure of monosubstituted benzenes and X-ray emission spectroscopy

The electronic structure of the phenol molecule in the gas phase was studied by X-ray emission spectroscopy (using the O-Kα and C-Kα spectra). MNDO calculations were performed, which made it possible to construct theoretical spectra and interpret experimental spectra. The structure of the molecular orbitals of phenol was compared with those of benzene and water. The π-interaction of the phenyl fragment with the oxygen-containing substituent was investigated. The contribution of the 2p atomic orbital of the oxygen atom to the π-HOMO of phenol is considerably less than that to lower-lying orbitals. For Part 3, see Ref. 1. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2187–2193, December, 1997.     

Molecular conformations of a partially halogenated ether: A study based on infrared spectroscopy and density functional theory calculations

A new partially halogenated ether (ClCF₂CF(CF₃)OCF₂CH₃) has been synthesized and characterized using DSC, GC, ¹H and ¹⁹F NMR, IR. The experimental infrared spectra of this “flexible” molecule have been successfully interpreted on the basis of reliable Density Functional Theory calculations. An efficient method useful for the identification of the many stable conformers has been developed and applied. Infrared spectra of the stable conformers have been simulated after full geometry optimization. The results obtained allow detection of conformation-sensitive bands, making possible the interpretation of fine details in the spectra.     

Structure, spectroscopy, and reactivity properties of porphyrin pincers: a conceptual density functional theory and time-dependent density functional theory study

Porphyrin and pincer complexes are both important categories of compounds in biological and catalytic systems. The idea to combine them is computationally investigated in this work. By employment of density functional theory (DFT), conceptual DFT, and time-dependent DFT approaches, structure, spectroscopy, and reactivity properties of porphyrin pincers are systematically studied for a selection of divalent metal ions. We found that the porphyrin pincers are structurally and spectroscopically different from their precursors and are more reactive in electrophilic and nucleophilic reactions. A few quantitative linear/exponential relationships have been discovered between bonding interactions, charge distributions, and DFT chemical reactivity indices. These results are implicative in chemical modification of hemoproteins and understanding chemical reactivity in heme-containing and other biologically important complexes and cofactors.     

Time dependent density functional theory of X-ray absorption spectroscopy of alkaline-earth oxides

The time dependent density functional theory (TDDFT) has been employed to calculate the X-ray absorption spectra of the alkaline-earth oxides at the metal K and L and oxygen K edges. Cluster models to mimic the bulk are considered, embedded within an array of point charges to simulate the Madelung potential. Comparison with experimental data allows a precise assessment of the performances of the method, which appears competitive and suitable to reproduce the measurements. The configuration mixing explicitly included in the TDDFT scheme appears mandatory for a correct reproduction of the oscillator strength distribution in the metal 2p spectra. The origin of the theoretical spectral features is investigated with the help of the partial density of the virtual states (PDOS) calculated for each core hole considered. The trends of the spectral features along the series are discussed in terms of the nature of the virtual final states and related to the presence of the empty nd orbitals of the metal cations. The trend of the below-edge features in the O1s excitation spectra is discussed in terms of the metal-oxygen bonding interaction.     

Combined X-ray absorption spectroscopy and density functional theory examination of ferrocene-labeled peptides

A combination of soft X-ray absorption spectroscopy (XAS) measurements and StoBe density functional theory (DFT) calculations has been used to study the electronic structures of the ferrocene-labeled peptides Fc-Pro(n)-OBz (n = 1-4). Excellent agreement between the measured and the simulated data is observed in all cases, and the origin of all major spectral features was assigned. The breaking of the degeneracy of the ferrocene 3e(2u)-like unoccupied molecular orbital under the influence of a substituent attached to a Cp ring was observed experimentally. The influence of the bonding environment on the O 1s and N 1s XAS spectra was examined. A corrected assignment of one of the major features in the Fe 2p XAS spectra of ferrocene is proposed and supported by the DFT simulations, as well as the measured spectra.