Rotational isomerism of vinyl ethers of azines based on the data of IR spectroscopy and quantum-chemical AM1 calculations

The IR spectra of vinyl ethers of azines have two C=C stretching vibration bands of the vinyl group at 1620 and 1640 cm⁻¹, which correspond to thes-cis and nonplanars-trans conformers, respectively. According to the results of AM1 calculations, the hetaryl fragment and the vinyl group in thes-trans conformers of all the ethers under study are twisted out of the C−O−C plane by ∼30°. In thes-cis conformation, the angle of rotation of the heterocycle with respect to the vinyloxy group varies from 45 to 90°. The character of the change in the intensity of the v(C=C) absorption bands of the doublet under changes of the temperature indicates that thes-trans conformer is energetically favorable. The exception is 5-vinyloxyacridine for which thes-cis conformation is more favorable. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2439–2442, December, 1998.     

Amorphous sol-gel titania modified with heteropolyacids

Samples of amorphous sol-gel titania were prepared at 50%wt with tungstophosphoric or molybdophosphoric acid. The resulting gels were dried and annealed at 100, 150 and 200°C and studied by FT-IR, UV-Vis, EPR, TGA and Raman spectroscopy. By FT-IR the evolution of the stretching vibration of the OH groups (3450–3700 cm⁻¹) was followed. The intensity of this band decreased as the annealing temperature increased. With UV-Vis spectroscopy the band gap was determined for each sample, and the Eg was found between 2.72 and 3.38 eV. Raman spectroscopy revealed the formation of Mo—O—Ti and W—O—Ti—O bonds. An intense EPR signal at g = 1.998 was observed during annealing of the samples. Amorphous solids with a significant number of vacancies and promising photocatalytic properties were obtained.     

MOLECULAR PACKING IN TRIACYL-sn-GLYCEROLS: INFLUENCES OF ACYL CHAIN LENGTH AND UNSATURATION

The molecular packing in triacylglycerols having different acyl chains has been examined by differential scanning calorimetry, powder X-ray diffraction and vibrational spectroscopy (infrared and Raman) techniques. In the triacylglycerols examined, the acyl chain length, unsaturation or the position of substitution on the glycerol were changed systematically to observe their influence on the molecular packing in different polymorphic forms. Variation in the 3-acyl chain length of 1,2-dipalmitoyl-3-acyl-sn-glycerols (PPX) influenced the molecular packing along the long axis in the stable polymorphic forms. Three different modes of packing were observed. If X ≤ 4, the compounds packed in a bilayer structure similar to diacylglycerols, or if X ≥ 10 and ≤ 16 the compounds packed in a bilayer structure but similar to mono acid triacylglycerols. However for intermediate 3-acyl chain lengths, as in PP6 and PP8 the stable packing can occured only through chain segregation resulting in a trilayer structure. In the triacylglycerols containing unsaturated acyl chains, 1,2-dioleoyl-3-acyl-sn-glycerols (00X) and 1,3-dioleoyl-Z-acyl-sn-glycerols (0X0) the stable polymorphic forms packed in a trilayer structure where the odd acyl chains segregated and formed a middle layer. In a metastable hexagonal packing (α-phase) the long range ordering is minimal. Because of this lack of specific chain-chain interaction the 3-short acyl chain compounds of PPX packed in a unimolecular length structure (except PP2) whereas the 3-long acyl chain compounds packed in a bilayer structure. In orthorhombic perpendicular and triclinic parallel packing where the specific chain-chain interaction is increased, the end plane methyl packing and the glycerol conformation played important roles in the formation of bi-, tri- and hexalayer structures. The driving force in the formation of these different structures is to minimize the crystal defects created by the odd acyl chains and to enhance the specific chain-chain interactions. The presence of an odd acyl chain influenced the lateral chain packing as well, e.g., the stability of the orthorhombic perpendicular packing is enhanced by the presence of an odd acyl chain and even in some cases it is favored over the triclinic parallel packing. The odd acyl chain at the 1- or 3position of -sn-glycerol stabilized the orthorhombic perpendicular packing. This indicates the glycerol conformation is probably perpendicular to the layer plane and thus is different from the monoacid triacylglycerols.     

A joint theoretical and experimental structural study of two novel 1,2,4-triazolo[3,4-<Emphasis Type="Italic">b</Emphasis>]-1,3,4-thiadiazine derivatives

In this study, two novel 1,2,4-triazolo[3,4-b]-1,3,4-thiadiazine derivatives, 3-[2-(4-methoxyphenyl)ethyl]-6-phenyl-7H-1,2,4-triazolo[3,4-b]-1,3,4-thiadiazine (compound 1) and 3-[2-(3,4,5-trimethoxyphenyl)ethyl]-6-phenyl-7H-1,2,4-triazolo[3,4-b]-1,3,4-thiadiazine (compound 2), having analgesic–anti-inflammatory activity were synthesized and characterized by IR, ¹H-NMR, and mass spectroscopic techniques besides elementary analysis. Additionally, the structures and molecular packings of the mentioned compounds have been investigated by X-ray single crystal diffraction. The six-membered thiadiazine ring adopts the screw boat conformation in both the compounds. In the crystal packings of the compounds 1 and 2, C–H···N and C–H···O interactions link the molecules into a two-dimensional network and generate infinite chains. Furthermore, C–H···π intermolecular interactions provide further stability to the molecular packing in both the molecules. The conformers have been predicted by the potential energy surface scan employing the AM1 method. Geometry optimizations and electrostatic properties have been obtained using AM1 and ab initio quantum methods.     

Raman spectroscopic investigation of the antimalarial agent mefloquine

The antimalarial agent mefloquine was investigated using Fourier transform near-infrared (FT NIR) Raman and FT IR spectroscopy. The IR and Raman spectra were calculated with the help of density functional theory (DFT) and a very good agreement with the experimental spectra was achieved. These DFT calculations were applied to unambiguously assign the prominent features in the experimental vibrational spectra. The calculation of the potential energy distribution (PED) and the atomic displacements provide further valuable insight into the molecular vibrations. The most prominent NIR Raman bands at 1,363 cm⁻¹ and 1,434 cm⁻¹ are due to C=C stretching (in the quinoline part of mefloquine) and CH₂ wagging vibrations, while the most intense IR peaks at 1,314 cm⁻¹; 1,147 cm⁻¹; and 1,109 cm⁻¹ mainly consist of ring breathings and δCH (quinoline); C–F stretchings; and asymmetric ring breathings, C–O stretching as well as CH₂ twisting/rockings located at the piperidine moiety. Since the active agent (mefloquine) is usually present in very low concentrations within the biological samples, UV resonance Raman spectra of physiological solutions of mefloquine were recorded. By employing the detailed non-resonant mode assignment it was also possible to unambiguously identify the resonantly enhanced modes at 1,619 cm⁻¹, 1,603 cm⁻¹ and 1,586 cm⁻¹ in the UV Raman spectra as high symmetric C=C stretching vibrations in the quinoline part of mefloquine. These spectroscopic results are important for the interpretation of upcoming in vitro and in vivo mefloquine target interaction experiments.     

Phase transformations of ammonium tungsten bronzes

This article discusses the formation and structure of ammonium tungsten bronzes, (NH₄) _x WO_3−y . As analytical tools, TG/DTA-MS, XRD, SEM, Raman, XPS, and ¹H-MAS NMR were used. The well-known α-hexagonal ammonium tungsten bronze (α-HATB, ICDD 42-0452) was thermally reduced and around 550 °C a hexagonal ammonium tungsten bronze formed, whose structure was similar to α-HATB, but the hexagonal channels were almost completely empty; thus, this phase was called reduced hexagonal (h-) WO₃. In contrast with earlier considerations, it was found that the oxidation state of W atoms influenced at least as much the cell parameters of α-HATB and h-WO₃, as the packing of the hexagonal channels. Between 600 and 650 °C reduced h-WO₃ transformed into another ammonium tungsten bronze, whose structure was disputed in the literature. It was found that the structure of this phase—called β-HATB, (NH₄)_0.001WO_2.79—was hexagonal.     

Phase transitions,conformational lability,and intermolecular interactions in alkoxycyanobiphenyls

Vibrational spectroscopy methods (IR absorption, Raman scattering, calculations) were used to study changes in molecular structures of alkoxycyanobiphenyls during phase transitions. The spectra were measured in the 33–3500 cm⁻¹ region at temperatures of 100–450 K. The temperature dependences of the IR bands that correspond to the noncharacteristic vibrations of molecular fragments between the phenyl rings and the alkyl radicals point to the conformational polymorphism of these molecules. An analysis of the Raman bands corresponding to the characteristic vibrations of the C−H bonds of alkyl radicals [q(CH)], the C−H and C−C bonds of phenyl rings [q(CH) and Q(CC)], and the CN bonds of the cyano groups [Q(CN)] suggests significant intermolecular interactions. The conformational lability and intermolecular interactions are associated with differences in molecular packing in the substances of this homologous series. Saratov State University. Institute of Solid State Physics, Rostov State University. Institute of Physics, Uzbekistan Academy of Sciences. Samarkand State University. Translated fromZhurnal Strukturnoi Khimii, Vol. 36, No. 5, pp. 814–822, September–October, 1995. Translated by I. Izvekova     

Raman scattering spectra and molecular conformations of bis(quaternaryammonium bromide)-water systems

The dimeric bis(quaternaryammonium bromide) surfactants, [Br⁻(CH₃)₂N⁺(C _m H_{2 m +1})—(CH₂) _s —(C _m H_{2 m +1})N⁺(CH₃)₂Br⁻, s = 2, 3 and m = 4, 6, 10 and 12, s = 6 and m = 8, 10, 12], have been synthesized and the phase maps of the sm6-8-water, sm6-10-water and sm6-12-water binary systems have been determined (sm6-8 implies s = 6, m = 8). In order to examine the molecular structures of these solid samples and of their dimeric surfactant-water binary systems, Raman spectra of the simple dimeric surfactants, sm2-4 and sm3-4, in which crystal structures of the trans- and cis-type conformations have been determined by single-crystal X-ray diffraction analysis, have been investigated, and Raman bands characteristic of these skeletal structures were found in the skeletal deformation region. On the basis of these characteristic Raman bands for the two conformations, it has been concluded that the dimeric surfactants, sm6-8, sm6-10 and sm6-12 also take up a cis-type conformation in the crystalline state. Furthermore, it has been found that the Raman bands in the C—H stretching, skeletal stretching and CH₂ scissoring regions are sensitive to phase structure. Received: 21 July 1998 Accepted in revised form: 9 November 1998     

Surface-enhanced Raman scattering detection of lysophosphatidic acid

Surface-enhanced Raman scattering using silver nanoparticles was applied to detect various forms of lysophosphatidic acid (LPA) to examine its potential application as an alternative to current detection methods of LPA as biomarkers of ovarian cancer. Enhancement of the Raman modes of the molecule, especially those related to the acyl chain within the 800–1300 cm⁻¹ region, was observed. In particular, the C–C vibration mode of the gauche-bonded chain around 1100 cm⁻¹ was enhanced to allow the discrimination of two similar LPA molecules. Given the molecular selectivity of this technique, the detection of LPA using SERS may eliminate the need for partial purification of samples prior to analysis in cancer screening.     

Computation-led design of pollutant gas sensors with bare and carbon nanotube supported rhodium alloys

Quantum chemical study has been performed on finite-sized bi-metallic Rh3M alloys, M = Ag, Ir, Pd, Pt, Au, derived from magic cluster, Rh4. Bond length of C–O and N–O are noticed to be elongated in the presence of rhodium alloy clusters. CO2 and NO2 gases are found to be highly adsorbed on Rh3M clusters, which is confirmed by stretching frequency of C–O and N–O. DFT evaluated dipole moment and electronic charge redistribution suggests the sensing capability of CO2 and NO2 gases by Rh3M clusters which is further confirmed by the calculated HOMO–LUMO gap. Mixed rhodium alloy clusters supported on single-wall carbon nanotube (SWCNT) exhibits much higher ability to sense CO2 and NO2. On the other hand, SWCNT@Rh3M shows higher catalytic activity for the activation of CO2 and NO2 in comparison to bare Rh3M because of the higher electronic charge redistribution in the case of SWCNT@Rh3M. In case of SWCNT-supported gas adsorbed clusters, p electrons play a major role in bonding.     

稀土离子及其配合物对二棕榈酰磷脂酰乙醇胺酯双层结构的影响

随着稀土在工农业和医疗保健上的广泛应用，稀土的生物无机化学研究受到了普遍的关注．以往的研究多集中在稀土离子的宏观毒理学[1]，而研究稀土离子与生物膜的作用较少[2]．稀土的生物小分子配体的配合物与生物膜作用的研究则未见报道．本文介绍了用拉曼光谱研究稀土离子及其柠檬酸、二乙三胺五乙酸（DTPA）配合物对二栋相酸乙醇胺（DPPE）脂双层的流动性以及碳氢链的构象转变和晶格有序性排列的影响．1实验部分DPPE系Sigma公司产品。La2O3（99．9％）为跃龙化工厂产品，柠檬酸、DTPA为北京化工厂产品．L3Cl3溶液由L32O3溶于盐酸…     

Modelisation of the Electric Field Linear Response of an Infinite Aggregate of All-Trans Hexatriene Chains by Electrostatic Interaction Model

A classical electrostatic polarization scheme using the additive distribution procedure has been applied to determine the longitudinal polarizability of an all-trans hexatriene molecule in an infinite stretched fiber. The parameters have been derived from ab initio CPHF/6-31G calculations and the electrostatic scheme has been validated via comparison with ab initio results on small clusters. Upon packing the polarizability of all-trans hexatriene increases by 7%. This small increase results from the balance between the enhancement of the polarizability due to collinear packing and the reduction associated with lateral packing.     

X-ray crystal structures of halogen containing nucleobase derivatives in unsolvated and DMSO solvated forms

A series of halogenated nucleobase derivatives 1–4 is reported to yield solvent-free (2) and DMSO solvated crystals (1, 3, 4) on the crystallization from DMSO with one of them (4) containing an additional molecule of water. The molecular and crystal structures are described and comparatively discussed with reference to previous results on related compounds. The molecule of 1 is planar, molecules of 2 and 3 show syn alignment with reference to the heterocyclic ring and common C2′-endo conformation of the ribose residue, while 4 is also syn aligned but C4′-exo in the sugar conformation. The packing structures reveal typical aggregations created via networks of hydrogen bonds. These involve conventional N–H···N, N–H···O and O–H···O interactions between nucleobase and ribose units as well as solvent molecules, additionally supported by weak C–H···O contacts but excluding the participation of halogen···halogen interactions as well as halogen···heteroatom contacts in the supramolecular structure formation.     

Crystal Structure and Conformation of a 10-Thiabilirubin

 A crystal structure determination of a bilirubin analog with a sulfur instead of a C(10)–CH₂ linking the two dipyrrinones is reported. Conformation-determining torsion angles and key hydrogen bond distances and angles are compared to those obtained from molecular dynamics calculations as well as to the corresponding data from X-ray determinations and molecular dynamics calculations of bilirubin. Like other bilirubins, the component dipyrrinones of the analog are present in the bis-lactam form with (Z)-configurated double bonds at C(4) and C(15). Despite the large differences in bond lengths and angles at –S–vs.–CH₂–, the crystal structure shows considerable similarity to bilirubin: both pigments adopt a folded, intramolecularly hydrogen-bonded ridge-tile conformation stabilized by six hydrogen bonds – although the interplanar angle of the ridge-tile conformation of the title compound is smaller (∼ 86°) than that of bilirubin (∼ 98°). The collective data indicate that even with long C–S bond lengths and a smaller C–S–C bond angle at the pivot point on the ridge-tile seam, intramolecular hydrogen bonding persists.     

Diamond-like carbon films for polyethylene femoral parts: Raman and FT-IR spectroscopy before and after incubation in simulated body liquid

In artificial prosthetics for knee, hip, finger or shoulder joints, ultrahigh molecular weight polyethylene (UHMW-PE) is a significant material. Several attempts to reduce the wear rate of UHMW-PE, i.e. the application of suitable coatings, are in progress. A surface modification of polyethylene with wear-resistant hydrogenated diamond-like carbon is favourable, owing to the chemical similarity of polyethylene (–C–H₂–) _n and C:H or amorphous C:H (a–C:H) coatings with diamond-like properties. In the present study, the microstructure of a–C:H coatings on UHMW-PE substrates was investigated by Raman and Fourier transform infrared (FT-IR) spectroscopy. FT-IR spectroscopy shows very broad absorption lines, which point to the disorder and diversity of different symmetric, asymmetric aromatic, olefin sp ²-hybridized or sp ³-hybridized C–H groups in the amorphous diamond-like carbon coating. Following a long incubation of 12 months in a simulated body liquid, the structural investigations were repeated. Furthermore, fractured cross-sections and the wetting behaviour with polar liquids were examined. After incubation in simulated body liquid, Raman spectroscopy pointed to a reduction of the C–H bonds in the diamond-like carbon coatings. On the basis of these findings, one can conclude that hydrogenated diamond-like carbon is able to interact with salt solutions by substituting the hydrogen with appropriate ions.     

Local dipole interactions induce helicity of (<Emphasis Type="Italic">S</Emphasis>)-2-butyl-<Emphasis Type="Italic">N</Emphasis>-(1,8-naphthaloyl)-2-aminobenzoate molecules containing 1,8-naphthalimide rings utilized as a column building blocks: X-ray and quantum mechanical studies

In the crystal of triclinic symmetry the title compound contains four independent molecules, which differ in the conformation of the aliphatic carbon chain (T, G ⁺and G ⁻) and in the helicity (M or P) of the N-(1,8-naphthaloyl)-2-aminobenzoate (NAB) unit. Quantum chemical MP2 calculations showed that isolated molecules favor helicity of NAB bichromophores most likely due to attractive interactions between local dipoles formed along carbonyl bonds, such that the helical arrangement of O=C–C–C–N–C=O fragments is stabilized by intramolecular interactions between terminal anti-parallel local carbonyl dipoles. In the crystal structure, columnar stacking of the anti-parallel 1,8-naphalimide rings is observed. In a column the neighboring NAB units display opposite helicity.     

Crystal Structure and Conformation of a 10-Thiabilirubin

Summary.  A crystal structure determination of a bilirubin analog with a sulfur instead of a C(10)–CH₂ linking the two dipyrrinones is reported. Conformation-determining torsion angles and key hydrogen bond distances and angles are compared to those obtained from molecular dynamics calculations as well as to the corresponding data from X-ray determinations and molecular dynamics calculations of bilirubin. Like other bilirubins, the component dipyrrinones of the analog are present in the bis-lactam form with (Z)-configurated double bonds at C(4) and C(15). Despite the large differences in bond lengths and angles at –S–vs.–CH₂–, the crystal structure shows considerable similarity to bilirubin: both pigments adopt a folded, intramolecularly hydrogen-bonded ridge-tile conformation stabilized by six hydrogen bonds – although the interplanar angle of the ridge-tile conformation of the title compound is smaller (∼ 86°) than that of bilirubin (∼ 98°). The collective data indicate that even with long C–S bond lengths and a smaller C–S–C bond angle at the pivot point on the ridge-tile seam, intramolecular hydrogen bonding persists. Received August 16, 2001. Accepted September 12, 2001     

Molecular and crystal structures of stereoisomeric2R,3R,6S-2-(1′S-hydroxy-1′-biphenylyl)- and2R,3R,6S-2-(1′R-hydroxy-1′-biphenylyl)methyl-3-methyl-6-isopropylcyclohexanones

It was established by X-ray diffraction analysis that 2-(1′-hydroxy-1′-biphenylyl)methyl-3-methyl-6-isopropylcyclohexanone, one of the minor products of the directed aldol reaction of (−)-menthone bromomagnesium enolate with 4-phenylbenzaldehyde, has the2R,3R,6S, 1′R configuration. The characteristic features of the spatial structure of this β-hydroxyketone were compared with those of the major stereoisomeric product of the above-mentioned reaction. The latter has the2R,3R,6S,1′S configuration. In the crystals, both stereoisomers have the cyclohexanone ring in a chair-like conformation with the three substituents in equatorial positions and are characterized by the presence of the annelated (cis-fused) pseudoring with an −OH…O=C< intramolecular hydrogen bond. The structures of the stereoisomers differ in the orientation of the aryl group and the hydrogen atom at the C(1′) chiral center with respect to the cyclohexanone ring. The results of X-ray diffraction analysis were compared with the data of molecular mechanics calculation for the energetically most favorable conformations of the isolated molecules of β-hydroxyketones under study. Translated fromIzvestiya Akademii Nauk, Seriya Khimicheskaya, No. 11, pp. 2251–2257, November, 1998.