Multiple hydrogen bonds tuning guest/host excited-state proton transfer reaction: its application in molecular recognition

A molecular recognition concept exploiting multiple-hydrogen-bond fine-tuned excited-state proton-transfer (ESPT) was conveyed using 3,4,5,6-tetrahydrobis(pyrido[3,2-g]indolo)[2,3-a:3',2'-j]acridine (1a). The catalytic type 1a/carboxylic acids hydrogen-bonding (HB) complexes undergo ultrafast ESPT, resulting in an anomalously large Stokes shifted tautomer emission (lambdamax approximately 600 nm). Albeit forming a quadruple HB complex, ESPT is prohibited in the noncatalytic-type 1a/urea complexes (lambdamax approximately 430 nm). The HB configuration tuning ESPT properties lead to a feasible design for sensing multiple-HB-site analytes of biological interest.     

Enhancement of chiral recognition by formation of a sandwiched complex in capillary electrophoresis

For chiral primary amino compounds not separable by cyclodextrins alone, chiral recognition was successfully achieved by the formation of a sandwiched complex of the non-chiral 18-crown-6, the chiral amine and cyclodextrin (CD) [18-crown-6+amino compound+CD]. The separation of 1-methyl-3-phenylpropylamine and 1,2,3,4-tetrahydro-1-naphthylamine racemates showed the special function of the non-chiral 18-crown-6 on chiral recognition. By formation of the sandwiched complex, the chiral center of 1-methyl-3-phenylpropylamine was successfully recognized, and resolution of 1,2,3,4-tetrahydro-1-naphthylamine dramatically increased. In these studies, the mobility differences of the enantiomers were evaluated as a function of the concentration of cyclodextrins with and without the 18-crown-6, and as a function of the concentration of the 18-crown-6. In addition, the separations by this method were compared to those by the chiral 18-crown-6 reagent.     

Structure of the enzyme-substrate complex for guanosine triphosphate hydrolysis by elongation factor EF-Tu: Comparison of quantum mechanics/molecular mechanics and molecular dynamics results

The equilibrium geometric configurations of the enzyme-substrate complex for guanosine triphosphate hydrolysis by elongation factor EF-Tu calculated using two theoretical approaches, a combined quantum mechanics/molecular mechanics (QM/MM) method and a molecular dynamics method, are compared. The reaction complex geometry determined by the QM/MM method is consistent with the accepted reaction mechanism, whereas, in the enzyme-substrate structure predicted by the molecular dynamics method with the CHARMM force field, the relative positions of the nucleophilic reagent (water molecules) and the base (a histidine side chain) do not correspond to the optimal reagent arrangement.     

Mechanism of the formation of hydrogen tetroxide and peroxide via low-temperature interaction between hydrogen atoms and molecular oxygen

A mechanism and kinetic model for the synthesis of peroxide radical condensate via the low-temperature interaction of hydrogen atoms with O₂ molecules is proposed. The main components of the reaction, hydrogen tetroxide H₂O₄ and hydrogen peroxide H₂O₂, are formed in a low-temperature liquid layer formed near the cold surface during synthesis. Molecules of H₂O₄ and H₂O₂ are stabilized by transitioning to the solid phase. The dependences of the \(N_{O_2 } /N_{H_2 O_2 }\) ratio on the ratio of concentrations of H and O₂ in the gas phase, calculated on the basis of the model, are consistent with the experimental data.     

Cleavage of carbon-carbon bonds of diphenylacetylene and its derivatives via photolysis of Pt complexes: tuning the C-C bond formation energy toward selective C-C bond activation

Carbon-carbon bond activation of diphenylacetylene and several substituted derivatives has been achieved via photolysis and studied. Pt0-acetylene complexes with eta2-coordination of the alkyne, along with the corresponding PtII C-C activated photolysis products, have been synthesized and characterized, including X-ray crystal structural analysis. While the C-C cleavage reaction occurs readily under photochemical conditions, thermal activation of the C-C bonds or formation of PtII complexes was not observed. However, the reverse reaction, C-C reductive coupling (PtII --> Pt0), did occur under thermal conditions, allowing the determination of the energy barriers for C-C bond formation from the different PtII complexes. For the reaction (dtbpe)Pt(-Ph)(-CCPh) (2) --> (dtbpe)Pt(eta2-PhCCPh) (1), DeltaG was 32.03(3) kcal/mol. In comparison, the energy barrier for the C-C bond formation in an electron-deficient system, that is, (dtbpe)Pt(C6F5)(CCC6F5) (6) --> (dtbpe)Pt(eta2-bis(pentafluorophenyl)acetylene) (5), was found to be 47.30 kcal/mol. The energy barrier for C-C bond formation was able to be tuned by electronically modifying the substrate with electron-withdrawing or electron-donating groups. Upon cleavage of the C-C bond in (dtbpe)Pt(eta2-(p-fluorophenyl-p-tolylacetylene) (9), both (dtbpe)Pt(p-fluorophenyl)(p-tolylacetylide) (10) and (dtbpe)Pt(p-tolyl)(p-fluorophenylacetylide) (11) were obtained. Kinetic studies of the reverse reaction confirmed that 10 was more stable toward the reductive coupling [the term "reductive coupling" is defined as the formation of (dtbpe)Pt(eta2-acetylene) complex from the PtII complex] than 11 by 1.22 kcal/mol, under the assumption that the transition-state energies are the same for the two pathways. The product ratio for 10 and 11 was 55:45, showing that the electron-deficient C-C bond is only slightly preferentially cleaved.     

Calorimetric investigations of the solvent effect on complex formation between pyridine derivatives and molecular iodine

The heats of solution of isoquinoline and 2,4-lutidine and heats of 11 complex formation with molecular iodine inn-hexane, cyclohexane, CCl₄, benzene, and chlorobenzene have been determined by the calorimetric method. The heats of transfer of the donor and donor-acceptor complex from nonsolvating medium (n-hexane) to the particular solvent were calculated and discussed in terms of donor and solvent properties and solute-solute-solvent interactions.Presented at the IV International Symposium on Solute-Solute-Solvent Interactions, Vienna, September 11–16, 1978, pp. 152–154.     

Weak C-H?O hydrogen bonds between diacylamidopyridine and thymine derivatives in solution and its influence on the binding constants

The presence of C-H?O hydrogen bonds in a complex composed of 2-(acrylamido)-6-(methylamido) pyridine and 1-octyl thymine is demonstrated by ¹H, ¹³C NMR study and X-ray analysis. Further titration experiment shows these weak C-H?O hydrogen bonds will affect the binding constants through a geometric effect compared with other structural analogous systems.     

Theoretical model of infrared spectra of hydrogen bonds in molecular crystals and its application to interpretation of infrared spectra of 1-methylthymine

A theoretical model for vibrational interactions in the hydrogen bonds in molecular crystals with four molecules forming two centrosymmetric dimers in the unit cell is presented. The model takes into account anharmonic-type couplings between the high-frequency N-H(D) and the low-frequency N...O stretching vibrations in each hydrogen bond, resonance interactions (Davydov coupling) between equivalent hydrogen bonds in each dimer, resonance interdimer interactions within a unit cell, and Fermi resonance between the N-H(D) stretching fundamental and the first overtone of the N-H(D) in-plane bending vibrations. The vibrational Hamiltonian, selection rules, and expressions for the integral properties of an absorption spectrum are derived. The model is used for theoretical simulation of the NH stretching bands of 1-methylthymine and its ND derivative at 300 K. The effect of deuteration is successfully reproduced by our model. Infrared, far-infrared, Raman, and low-frequency Raman spectra of 1-methylthymine and its deuterated derivative have been measured. Experimental geometry and frequencies are compared with the results of density functional theory calculations performed at the B3LYP6-311++G**, B3LYP/cc-pVTZ, B3PW916-311++G**, and B3PW91/cc-pVTZ levels.     

Solvent influence upon complex formation between different 1,8-dioxo-octahydroxanthene derivatives and yttrium(III) cation in some non-aqueous solvents using conductometric method

The complexation reactions between the yttrium(III) cation and (4-chlorophenyl, phenyl, 4-nitrophenyl, 4-methoxyphenyl, 4-methylphenyl) 9-substituted 1,8-dioxo-octahydroxanthene were studied in acetonitrile (AN) and methanol (MeOH) at different temperatures using the electrical conductivity measurements. The conductance data show that the stoichiometry of all formed complexes between the Y³⁺ cation and the studied ligands is 1: 1 [ML]. The order of stability of the complexes formed between the organic ligands and Y³⁺ cation in pure MeOH at 45°C was found to be: (3,6,6-Tetramethyl-9-(4-chlorophenyl)-1,8- dioxo-octahydroxanthene·Y³⁺) > (3,6,6-Tetramethyl-9-(4-methoxyphenyl)-1,8-dioxo-octahydroxanthene · Y³⁺) > (3,6,6-Tetramethyl-9-(4-phenyl)-1,8-dioxo-octahydroxanthene·Y³⁺) ≈ (3,6,6-Tetramethyl-9-(4- nitrophenyl)-1,8-dioxo-octahydroxanthene·Y³⁺) > (3,6,6-Tetramethyl-9-(4-methylphenyl)-1,8-dioxooctahydroxanthene ·Y³⁺). The values of the standard thermodynamic parameters (ΔH_c^°, ΔS_c^°) for formation of the complexes were obtained from temperature dependence of the formation constants of the complexes using the van’t Hoff plots. The experimental results show that the thermodynamics of the complexation reactions is influenced by the nature of solvent system and in most cases, the complexes are entropy stabilized.     

Study of the molecular interaction between lysozyme and heparin and application in affinity chromatography

Lysozyme interacts with heparin by giving a stable and insoluble complex that dissociates at increased ionic strength. The formation of the complex and its stability towards pH and sodium chloride concentration were studied in solution and in a heterogeneous phase by means of heparin immobilized on agarose beads. The two sets of results are in agreement and show that the interaction between heparin and lysozyme is essentially ionic. The practical consequence is the possibility of developing a one-step method of purification of egg-white lysozyme by affinity chromatography with a particularly high yield of biochemical activity.     

1,8-Naphthalimide-based colorimetric and fluorescent sensor for recognition of GMP,TMP, and UMP and its application in in vivo imaging

In this study, a series of 1,8-naphthalimide-based analogs were developed for fluorescence imaging of nucleotides in Caenorhabditis elegans. In DMSO, compound 1 proved to be an effective and selective colorimetric and fluorescent sensor for recognition of GMP, TMP, and UMP over other structurally similar nucleotides. Among all the tested nucleotides, only the addition of GMP, TMP, and UMP resulted in a fluorescence color change from blue to brown with a fluorescence enhancement of more than 600-fold, with the colorless solution turning brown. NMR spectroscopic titration, theoretical calculations, and spectral tests performed using various solvent compositions confirmed that compound 1 formed multiple hydrogen bonds with the related base groups in the nucleotide. Compound 1 demonstrated its utility as a fluorescent chemosensor for detecting GMP, TMP, and UMP in in vivo imaging of GMP, TMP, and UMP in C. elegans.     

A novel porous supramolecular complex constructed by the co-crystallization of melamine and sulfate via hydrogen bonds and aromatic π-π interaction

Co-crystallization of melamine(MA) and sulfate results in crystalline product [(C₃H₇N₆⁺)₂(SO₄²⁻)] · 2H₂O. The novel supramolecular complex has been characterized by elemental analysis, thermal analysis (TGA and DSC), nuclear magnetic resonance (NMR), and single crystal X-ray diffraction. X-ray crystallographic studies of the complex reveal that the title complex has a 3-D microporous structure which is linked by intense intermolecular hydrogen-bonding interactions (N–H······O, N–H······N, O–H······O) and aromatic π-π interaction, which stabilize the whole crystal framework. The TGA curve shows that the complex is stable up to 500 °C, above which its structure begins to collapse.     

Synthesis of a bile acid-based click-macrocycle and its application in selective recognition of chloride ion

A novel method for the synthesis of a bile acid-based macrocycle has been developed using click chemistry. The 1,2,3-triazolium derivative of the macrocycle shows remarkable selectivity in binding of chloride ion.     

Theoretical model for a tetrad of hydrogen bonds and its application to interpretation of infrared spectra of salicylic acid

Theoretical model of vibrational interactions in hydrogen-bonded salicylic acid dimer is presented which takes into account the adiabatic couplings between high- and low-frequency O-H and O...O stretching vibrations, resonance interactions between both intermolecular hydrogen bonds and between inter- and intramolecular hydrogen bonds, and Fermi resonance between the O-H stretching fundamental and the first overtone of the O-H in-plane bending vibrations. The model is used for theoretical simulation of the nu(s) stretching bands of salicylic acid and its OD derivative at 300 K. The effect of deuteration is successfully reproduced by our model. Infrared, far infrared, Raman, and low-frequency Raman spectra of the polycrystalline salicylic acid and its deuterated derivative have been measured. The geometry and experimental frequencies are compared with the results of density-functional theory calculations performed at the B3LYP6-31 ++ G**, B3LYP/cc-pVTZ, B3PW916-31 ++ G**, and B3PW91/cc-pVTZ levels. O-H, O-D, and O...O stretching frequencies are used in theoretical simulation of the nu(s) stretching bands.     

Construction of Pt complex within Zr-based MOF and its application for hydrogen production under visible-light irradiation

The present article deals with Pt complex construction within Zr-based MOF having bipyridine units in the framework (Zr-MOF-bpy-PtCl₂) and its photocatalytic activity for hydrogen production under visible-light irradiation (λ > 420 nm). Zr-MOF-bpy-PtCl₂ is prepared by the construction of a Zr-based MOF using 2,2′-bipyridine-5,5′-dicarboxylic acid (Zr-MOF-bpy), and subsequent complexation reaction with K₂PtCl₄. XRD and N₂ adsorption–desorption measurements have revealed that both Zr-MOF-bpy and Zr-MOF-bpy-PtCl₂ have a UiO-type structure. From the results of UV–Vis and XAFS measurements, the incorporated Pt species has been proven to be in square planar geometry involving two N atoms and two Cl atoms as a result of the Pt coordination with bipyridine units in the framework. Zr-MOF-bpy-PtCl₂ has been employed for a hydrogen production reaction from water containing a sacrificial electron donor under visible-light irradiation (λ > 420 nm). Zr-MOF-bpy-PtCl₂ realizes steady hydrogen production, and the amount of evolved hydrogen reaches 8.3 μmol after the 9 h reaction period, while Zr-MOF-bpy exhibits no photocatalytic activity under the same conditions. It has also been found that the activity of Zr-MOF-bpy-PtCl₂ is superior to that of the corresponding homogeneous complex analogue (bpy)PtCl₂.     

Morphological control and molecular recognition by bis-urea hydrogen bonding in micelles of amphiphilic tri-block copolymers

Hydrogen bonding between urea groups of amphiphilic tri-block copolymers considerably affects their self-assembly in water, which results in a strong modification of morphology and viscosity of aqueous solutions; the hydrogen bonding motif in these amphiphilic copolymers allows molecular recognition of small molecules with complementary hydrogen bonding units.     

Significant fluorescence enhancement by supramolecular complex formation between berberine chloride and cucurbit(n=7)uril and its analytical application

The supramolecular interaction of cucurbit(n = 7)uril (Q[7]) with berberine chloride (BER) has been studied in aqueous solution at pH 2.0 and room temperature by spectro-fluorimetry. The association constant of the complex was 2.07 × 10⁶ L mol⁻¹ calculated by using a nonlinear least squares method. ¹H NMR spectra confirmed that a 1:1 stable complex is formed between Q[7] and BER. This work proposes a possible interaction mode, in which the guest BER is incorporated inside the hydrophobic cavity of the host Q[7] via the isoquinoline ring part of the guest molecule. Based on a significant enhancement of the fluorescence intensity of this supramolecular complex, a spectrofluorimetric method with high sensitivity and selectivity has been developed for the determination of BER in aqueous solution in the presence of Q[7]. The linear range of the method was from 7.43 to 11.2 × 10³ ng mL⁻¹with the detection limit 4.2 ng mL⁻¹. There was no interference from the compounds normally used in tablets, serum or urine constituents. The proposed method was applied to the determination of BER in tablets, serum and urine samples with satisfactory results and good consistency with those obtained by the pharmacopoeia method. This shows that it has promising potential for therapeutic drug monitoring and pharmokinetics and for clinical application.     

Theoretical prediction of minima in association constants for complex formation between alkylviologens and indole derivatives in the presence of polyelectrolytes

Association constants K for the complexation between various alkylviologens (methyl, propyl, butyl, pentyl, and hexyl) and indole derivatives (acetate and butyrate) have been determined. The order of K values indicates the important role of hydrophobic interactions in aiding the formation of charge transfer complexes. Influences of two kinds of polyelectrolytes; i.e., potassium polystyrenesulfonate (KPSS, anionic) and 3,3-ionene (cationic) on the K values were also examined. KPSS decreased the K value but, interestingly, yielded a minimum, and the K value increased at high KPSS concentrations. The influence of the type of alkylviologen on the K versus [KPSS] plots was successfully understood by a theory of substrate partitioning between bulk water and the environment of the polymer.     

A novel carbazole-based ratiometric fluorescent sensor for Zn recognition through excimer formation and application of the resultant complex for colorimetric recognition of oxalate through IDAs

A new carbazole-based Zn²⁺ selective fluorescent sensor L has been developed. In CH₃CN/H₂O (1:1, v/v, HEPES 10 mM, pH=7.4) solution, L displays selective and ratiometric responses to Zn²⁺ through excimer formation. The Zn²⁺ recognition process has good anti-interference ability over other metal ions. The dinuclear complex Zn₂L₂ was further used as a receptor for oxalate. Through constructing a chemosensing ensemble with chromeazurol S, colorimetric recognition of oxalate in water solution was achieved via indicator displacement assays. The oxalate recognition process exhibits obvious color changes from blue to yellow and is naked eye detectable.     

Precise recognition of nucleotides and their derivatives through hydrogen bonding in water by poly(vinyldiaminotriazine)

In water, poly(2-vinyl-4,6-diamino-1,3,5-triazine)(PVDAT) selectively binds the derivatives of thymine and uracil through the formation of three hydrogen bonds with the diaminotriazine (DAT) residues. The nucleotides and dinucleotides are bound much more strongly than are nucleic acid bases, due to the additional interactions of their phosphates with the DAT residues. The binding constant of the thymidine 5′-monophosphate-PVDAT adduct (5400 M^-1) is one of the largest values ever reported for the artificial receptors in protic solvents. In contrast, cytosine and its monophosphate are hardly bound to PVDAT. A water-soluble vinyldiaminotriazine–acrylamide copolymer also forms hydrogen bonds with thymine in water, whereas the corresponding monomers do not. A polymer effect is predominantly important for the molecular recognition through hydrogen bonding in water.