Influence of Cu+ on the RS-NO bond dissociation energy of S-nitrosothiols

Density functional theory methods have been used to investigate the role and effects of Cu+ binding to the S and N centers of the -SNO functional group within S-nitrosothiols (RSNOs), on the lability of the NO group. The binding of Cu+ to the S center is found to weaken the S-N bond, while the N-O bond is concomitantly strengthened, consistent with the notion that Cu+ binding catalyzes NO radical release. In contrast, however, the binding of Cu+ to the N center is found to dramatically shorten and strengthen the S-N bond with a concomitant lengthening of the N-O bond, suggesting stabilization of the RSNOs against NO release. Upon solvation, complexes with Cu+ bound to the N center are stabilized relative to the corresponding S-bound complexes, though remaining slightly higher in energy. The barriers to interconversion between corresponding isomers were also investigated. Implications for biochemical regulation of NO release from RSNOs are discussed.     

Nitrosonium-catalyzed decomposition of s-nitrosothiols in solution: a theoretical and experimental study

The decomposition of S-nitrosothiols (RSNO) in solution under oxidative conditions is significantly faster than can be accounted for by homolysis of the S-N bond. Here we propose a cationic chain mechanism in which nitrosation of nitrosothiol produces a nitrosated cation that, in turn, reacts with a second nitrosothiol to produce nitrosated disulfide and the NO dimer. The nitrosated disulfide acts as a source of nitrosonium for nitrosothiol nitrosation, completing the catalytic cycle. The mechanism accounts for several unexplained facets of nitrosothiol chemistry in solution, including the observation that the decomposition of an RSNO is accelerated by O(2), mixtures of O(2) and NO, and other oxidants, that decomposition is inhibited by thiols and other antioxidants, that decomposition is dependent on sulfur substitution, and that decomposition often shows nonintegral kinetic orders.     

Determination of N-NO bond dissociation energies of N-methyl-N-nitrosobenzenesulfonamides in acetonitrile and application in the mechanism analyses on NO transfer

The heterolytic and homolytic N-NO bond dissociation energies of seven substituted N-methyl-N-nitrosobenzenesulfonamides (abbreviated as G-MNBS, G = p-OCH(3), p-CH(3), p-H, p-Cl, p-Br, 2,5-2Cl, m-NO(2)) in acetonitrile solution were evaluated for the first time by using titration calorimetry and relative thermodynamic cycles according to Hess' law. The results show that the energetic scales of the heterolytic and homolytic N-NO bond dissociation energies of G-MNBS in acetonitrile solution cover the ranges from 44.3 to 49.5 and from 33.0 to 34.9 kcal/mol for the neutral G-MNBS, respectively, which indicates that N-methyl-N-nitrosobenzenesulfonamides are much easier to release a NO radical (NO(*)) than to release a NO cation (NO(+)). The estimation of the heterolytic and homolytic (N-NO)(-)(*) bond dissociation energies of the seven G-MNBS radical anions in acetonitrile solution gives the energetic ranges of -15.8 to -12.9 and -3.1 to 1.8 kcal/mol for the (N-NO)(-)(*) bond homolysis and heterolysis, respectively, which means that G-MNBS radical anions are very unstable at room temperature and able to spontaneously or easily release a NO radical or NO anion (NO(-)), but releasing a NO radical is easier than releasing NO anion. These determined N-NO bond dissociation energies of G-MNBS and their radical anions have been successfully used in the mechanism analyses of NO transfer from G-MNBS to 3,6-dibromocarbazole and the reactions of NO with the substituted N-methyl-benzenesulfonamide nitranions (G-MBSN(-)) in acetonitrile solution.     

A unique family of stable and water-soluble S-nitrosothiol complexes

In this work, we present a complete and detailed experimental characterization and theoretical study of a variety of coordinated S-nitrosothiols (RSNOs), such as cysteine derivatives, mercaptosuccinic acid, benzyl thiol, and phenyl thiol. Some of them are extremely unstable and sensitive in free form. Strikingly, in contrast with free S-nitrosothiols, we found that, upon coordination to iridium, they become very stable even in aqueous solutions. The study of these coordinated complexes provides further insight on the elucidation of structural aspects dealing with the nature of the S-N bond in RSNOs, a fact which still remains a matter of controversy.     

CuI/BtH催化苯硫酚与对甲氧基溴苯C–S偶联合成(4-甲氧基)(苯基)硫醚反应机理理论研究

采用密度泛函理论(DFT)中的B3LYP方法对CuI/BtH催化苯硫酚与对甲氧基溴苯C–S偶联合成(4-甲氧基)(苯基)硫醚反应机理进行了理论研究.在6-31+G(d)基组水平上,全参数优化了气相条件和N,N-二甲基甲酰胺(DMF)溶剂化条件下反应机理中所有反应物、过渡态、中间体和产物构型,对优化后各化合物的构型在B3LYP/6-311++G(d,p)基组下进行了单点能计算和零点能矫正,通过能量和振动频率分析以及内禀反应坐标(IRC)计算证实了中间体和过渡态的合理性.并且在优化计算相同基组水平上,应用自然键轨道(NBO)理论和分子中的原子(AIM)理论分析了复合物的成键特征和轨道间相互作用.在CuI单独催化此反应的机理中,计算得到一条反应路径,控制步骤所需活化能是180.49 kJ/mol(sol).而当CuI/BtH共同催化反应时,计算得到两条反应通道IA和IB,其中IA为最优反应通道,控制步骤所需活化能为101.77kJ/mol(sol);IB反应通道控制步骤活化能为143.78 kJ/mol(sol).配体苯并三唑(BtH)加入反应有效地降低了反应控制步骤所需活化能,同时有利于产物和催化剂的分离,这与实验所得结论一致.     

A kinetic study of S-nitrosothiol decomposition

Under anaerobic conditions S-nitrosothiols 1a-e undergo thermal decomposition by homolytic cleavage of the S-N bond; the reaction leads to nitric oxide and sulfanyl radicals formed in a reversible manner. The rate constants, k(t), have been determined at different temperatures from kinetic measurements performed in refluxing alkane solvents. The tertiary nitrosothiols 1c (k1(69 degrees C) = 13 x 10(-3) min(-1)) and 1d (k1(69 degrees C) = 91 x 10(-3) min(-1)) decomposed faster than the primary nitrosothiols 1a (k1(69 degrees C) = 3.0 x 10(-3) min(-1)) and 1b (k1(69 degrees C) = 6.5 x 10(-3) min(-1)). The activation energies (E# = 20.5-22.8 Kcal mol(-1)) have been calculated from the Arrhenius equation. Under aerobic conditions the decay of S-nitrosothiols 1a-e takes place by an autocatalytic chain-decomposition process catalyzed by N2O3. The latter is formed by reaction of dioxygen with endogenous and/or exogenous nitric oxide. The autocatalytic decomposition is strongly inhibited by removing the endogenous nitric oxide or by the presence of antioxidants, such as p-cresol, beta-styrene, and BHT. The rate of the chain reaction is independent of the RSNO concentration and decreases with increasing bulkiness of the alkyl group; this shows that steric effects are crucial in the propagation step.     

N-亚硝基吲哚系列化合物及其自由基负离子在乙腈介质中N-NO键断裂能的测定

利用滴定量热技术并结合适当的热力学循环测定了乙腈溶液中7个取代的N-亚硝基吲哚化合物中N—NO键的异裂能和均裂能, 能量范围分别为206.1~246.2 kJ/mol和119.1~124.6 kJ/mol. 表明N-亚硝基吲哚均裂释放NO自由基(NO·)比异裂释放NO正离子(NO+)要容易得多, 通过热力学循环得到的相应自由基负离子中N—NO键的异裂能和均裂能的能量范围分别为25.5~34.4和5.0~40.5 kJ/mol, 表明所研究化合物的自由基负离子在室温下很不稳定.     

Theoretical investigation on the mechanism of the CuI-catalyzed carbon-nitrogen coupling reaction of 2-iodo-selenophene with benzamide

The mechanism of the carbon-nitrogen coupling reaction of 2-iodo-selenophene with benzamide catalyzed by CuI has been investigated with density functional theory at the GGA/PW91/DND and GGA/PBE/DNP levels. The geometric configurations of the reactants, intermediates, transition states, and products were optimized and verified by means of vibration frequency calculations. A four-step mechanism was proposed for the reaction. The first step was the rate-control step. Two possible pathways in the fourth step were investigated, and the main pathway was identified by comparing their activation and dissociation energies. For comparison, the same calculations were performed to the reaction without the CuI activator. The activation barrier with CuI is 76 kJ mol(-1) smaller than that without CuI. It turns out that CuI can promote the reaction by lowering the activation energy. Our calculations reveal the crucial role of CuI in the reaction and agree well with experimental findings.     

S-亚硝基-N-乙酰基-D,L-青霉胺二肽分子中S-NO键断裂能的测定

利用滴定量热技术并结合适当的热力学循环测定了乙腈溶液中7个S-亚硝基-N-乙酰基-D,L-青霉胺二肽化合物中S—NO键的异裂能和均裂能, 其能量范围分别为234.5—246.2 kJ/mol和101.6—122.1 kJ/mol. 结果表明, 所研究的亚硝基硫醇化合物更容易通过S—NO键的均裂释放NO自由基(NO·). 通过热力学循环对7个亚硝基硫醇化合物自由基负离子中S—NO键的异裂能和均裂能进行估算, 能量范围分别为19.2—35.5 kJ/mol和-4.2—22.6 kJ/mol, 表明这些自由基负离子在室温下不稳定, 容易通过S—NO键的异裂释放出NO-.     

Homogeneous decomposition mechanisms of diethylzinc by Raman spectroscopy and quantum chemical calculations

The gas-phase decomposition pathways of diethylzinc (DEZn), a common precursor for deposition of Zn-VI compounds, were investigated in detail. The homogeneous thermal decomposition of DEZn in N2 carrier was followed in an impinging-jet, up-flow reactor by Raman scattering. Density Functional Theory calculations were performed to describe the bond dissociation behavior using the model chemistry B3LYP/6-311G(d) to estimate optimal geometries and Raman active vibrational frequencies of DEZn, as well as anticipated intermediates and products. Comparison of the measured DEZn decomposition profile to that predicted by a 2-D hydrodynamic simulation revealed that simple bond dissociation between zinc and carbon atoms is the dominant homogeneous thermal decomposition pathway. The calculations suggest several reactions involving intermediates and Raman scattering experiments confirming the formation of the dimer (ZnC2H5)2. In a different set of experiments, photolysis of DEZn gave evidence for decomposition by beta-hydride elimination. The results suggest that beta-hydride elimination is a minor pathway for the gas-phase homogeneous pyrolysis of diethylzinc. A reasonable transition state during beta-hydride elimination was identified, and the calculated energies and thermodynamic properties support the likelihood of these reaction steps.     

Zinc thiolate reactivity toward nitrogen oxides: insights into the interaction of Zn2+ with S-nitrosothiols and implications for nitric oxide synthase

Zinc thiolate complexes containing N(2)S tridentate ligands were prepared to investigate their reactivity toward reactive nitrogen species, chemistry proposed to occur at the zinc tetracysteine thiolate site of nitric oxide synthase (NOS). The complexes are unreactive toward nitric oxide (NO) in the absence of dioxygen, strongly indicating that NO cannot be the species directly responsible for S-nitrosothiol formation and loss of Zn(2+) at the NOS dimer interface in vivo. S-Nitrosothiol formation does occur upon exposure of zinc thiolate solutions to NO in the presence of air, however, or to NO(2) or NOBF(4), indicating that these reactive nitrogen/oxygen species are capable of liberating zinc from the enzyme, possibly through generation of the S-nitrosothiol. Interaction between simple Zn(2+) salts and preformed S-nitrosothiols leads to decomposition of the -SNO moiety, resulting in release of gaseous NO and N(2)O. The potential biological relevance of this chemistry is discussed.     

Thionitroxides, RSNHO*: the structure of the SNO moiety in "S-Nitrosohemoglobin", a possible NO reservoir and transporter

Nitric oxide (NO) plays important roles in many biological processes. S-Nitrosothiols have long been believed to have significant roles in NO biochemistry. The modified cysteine residue of hemoglobin was previously identified as a distorted S-nitrosothiol (RSNO) or an S-hydroxyamino radical (RSN*OH). Here we show that a thionitroxide (RSNHO*, S-aminyloxyl radical) is likely the observed species. Computational studies show that the thionitroxide is the only structure consistent with the electron density in the hemoglobin Cysbeta93-SNO structure previously reported. Although a metastable adduct, the thionitroxide in a hydrogen-bonding environment can form readily and release NO upon exposure to an aqueous environment. The thionitroxides could be responsible for the biological effects attributed to S-nitrosothiols or could serve as precursors to S-nitrosothiols in oxidative conditions.     

NO2, OH和OH-对环四甲撑四硝胺初始热解的影响

在密度泛函理论的(DFT)B3LYP/6-31g(d)水平上, 优化得到了环四甲撑四硝胺(β-HMX)及其与高氯酸铵(AP)裂解产物NO2、OH及OH-分别形成复合物的各种稳定构型, 计算了β-HMX及各复合物中最弱的N—NO2键解离能. 结果发现: β-HMX与NO2、OH结合后构型变化不是很大, 但对称性降低; β-HMX与OH-结合后, HMX构型发生较大变化, 原有的对称性明显遭到破坏. 计算表明: NO2易与HMX骨架环上亚甲基(—CH2—)中的H作用,“置换”出H而引发HMX的热解, 从而改变了HMX的初始分解通道; OH对HMX的N—NO2键解离影响不大, 而OH-与β-HMX结合后其N—NO2键解离能比β-HMX降低近200 kJ·mol-1, 表明OH-对其裂解有明显的促进作用. NO2、OH-的存在可使HMX的分解温度大大降低.     

Nitric oxide delivery by core/shell superparamagnetic nanoparticle vehicles with enhanced biocompatibility

We report the synthesis of Fe(3)O(4)/silica core/shell nanoparticles and their functionalization with S-nitrosothiols. These nanoparticles are of immense interest because of their nitric oxide (NO) release capabilities in human alveolar epithelial cells. Moreover, they act as large storage reservoirs of NO that can be targeted magnetically to the specific site with a sustainable release of NO for up to 50 h. Such nanoparticles provide an enhancement of the biocompatibility with released NO while allowing intracellular accumulation ascribed to their small size.     

硝酸钐水合物热分解过程的研究

Sm(NO_3)_3·6H_2O热分解过程的研究工作虽有文献报道,但结果不尽相同。文献[2]不同于文献[1,3],认为分解过程中存在无水盐阶段;文献[3]不同于文献[1,2],认为分解过程中存在低水合物。而且文献尚缺低水合物热分解机理的报道。我们也曾做过一些工作,但脱水阶段也不详尽。为此,我们详细地研究了Sm(NO_3)_3·nH_2O(n=     

Modulating nitric oxide release by S-nitrosothiol photocleavage: mechanism and substituent effects

The photochemistry and photophysics of a series of S-nitrosothiols (RSNOs) have been studied computationally. The photocleavage mechanism of the model compound CH(3)SNO to release CH(3)S· and ·NO was studied at the CASPT2 level resulting in a barrierless process when irradiating in the visible region (S(1)), in the near UV region (S(2)) and for photosensitized (T(1)) reaction. The absorption energy required to initiate photocleavage was calculated at the CASPT2 and B3P86 levels showing the possibility of the modulation of NO release by RSNO photoactivation as a function of the substituent R. Good correlations between the wavelengths of the lowest energy (1)(n,π*) and (1)(π,π*) transitions of aryl S-nitrosothiols and the corresponding Hammett constants of the substituents have been obtained.     

Theoretical studies on the S-N interactions in sulfoximine

The potential energy surface of sulfoximines has been searched using ab initio MO and Density Functional Calculations. The electronic structures of the isomers of sulfoximine have been studied using HF/6-31+G*, MP2(full)/6-31+G* and B3LYP/6-31+G* levels. Final energies of these molecules have been calculated at the high accuracy G2 and CBS-Q levels. Though a formal SN double bond is generally considered between sulfur and nitrogen in these systems, theoretical studies do not show any π interaction between them. S-N rotational barriers, bond dissociation energies, atomic charge analysis, and NBO analysis all indicate only a single bond across S-N with a very strong ionic interaction.     

Competitive paths for methanol decomposition on Pt(111)

Periodic, self-consistent, Density Functional Theory (PW91-GGA) calculations are used to study competitive paths for the decomposition of methanol on Pt(111). Pathways proceeding through initial C-H and C-O bond scission events in methanol are considered, and the results are compared to data for a pathway proceeding through an initial O-H scission event [Greeley et al. J. Am. Chem. Soc. 2002, 124, 7193]. The DFT results suggest that methanol decomposition via CH(2)OH and either formaldehyde or HCOH intermediates is an energetically feasible pathway; O-H scission to CH(3)O, followed by sequential dehydrogenation, may be another realistic route. Microkinetic modeling based on the first-principles results shows that, under realistic reaction conditions, C-H scission in methanol is the initial decomposition step with the highest net rate. The elementary steps of all reaction pathways (with the exception of C-O scission) follow a linear correlation between the transition state and final state energies. Simulated HREELS spectra of the intermediates show good agreement with available experimental data, and HREELS spectra of experimentally elusive reaction intermediates are predicted.     

A first-principles study of methanol decomposition on Pt(111)

A periodic, self-consistent, Density Functional Theory study of methanol decomposition on Pt(111) is presented. The thermochemistry and activation energy barriers for all the elementary steps, starting with O[bond]H scission and proceeding via sequential hydrogen abstraction from the resulting methoxy intermediate, are presented here. The minimum energy path is represented by a one-dimensional potential energy surface connecting methanol with its final decomposition products, CO and hydrogen gas. It is found that the rate-limiting step for this decomposition pathway is the abstraction of hydroxyl hydrogen from methanol. CO is clearly identified as a strong thermodynamic sink in the reaction pathway while the methoxy, formaldehyde, and formyl intermediates are found to have low barriers to decomposition, leading to very short lifetimes for these intermediates. Stable intermediates and transition states are found to obey gas-phase coordination and bond order rules on the Pt(111) surface.     

ESR Study of Free Radical Decomposition of N,N-Bis(arylsulfonyl)hydroxylamines in Organic Solution

Decomposition of N,N-bis(p-tolylsulfonyl)hydroxylamine (BTH) in chloroform and benzene solutions has been studied and was found to involve the formation of several radical intermediates. This process has been found to be accelerated by oxygen, resulting in the formation of p-toluenesulfonic acid and N,N,O-tris(p-tolylsulfonyl)hydroxylamine (TTH) as the main decay products. In addition, a small amount of p-toluenesulfonyl chloride has been isolated from chloroform solution, suggesting the chlorine abstraction from solvent. The formation of nitric oxide (NO) from BTH has been shown by mass spectrometry in gaseous phase and using nitronyl nitroxide as an NO trap in solution. It was proposed that liberation of NO proceeds through the homolytic cleavage of the S-N bond of p-tolylsulfonyl nitrite existing in equilibrium with BTH in solution. The formation of p-tolylsulfonyl radicals has been proved by spin trapping using 2-methyl-2-nitrosopropane (MNP) and 5,5-dimethyl-1-pyrroline N-oxide (DMPO). The rate of NO production in the presence of nitronyl nitroxide and the rate of oxygen consumption revealed linear plots in BTH concentration with the rate constants 0.0044 s(-)(1) and 0.0016 s(-)(1), respectively. It was found also that nitrogen dioxide formed during NO oxidation reacts readily with BTH to produce the organic analog of Fremy's radical. This radical recombines with p-tolylsulfonyl radical yielding N,N,O-trisubstituted hydroxylamine TTH.