Exploration of the potential energy surfaces, prediction of atmospheric concentrations, and prediction of vibrational spectra for the HO2...(H2O)n (n = 1-2) hydrogen bonded complexes

The hydroperoxy radical (HO2) plays a critical role in Earth's atmospheric chemistry as a component of many important reactions. The self-reaction of hydroperoxy radicals in the gas phase is strongly affected by the presence of water vapor. In this work, we explore the potential energy surfaces of hydroperoxy radicals hydrogen bonded to one or two water molecules, and predict atmospheric concentrations and vibrational spectra of these complexes. We predict that when the HO2 concentration is on the order of 10(8) molecules x cm(-3) at 298 K, that the number of HO2...H2O complexes is on the order of 10(7) molecules x cm(-3) and the number of HO2...(H2O)2 complexes is on the order of 10(6) molecules x cm(-3). Using the computed abundance of HO2...H2O, we predict that, at 298 K, the bimolecular rate constant for HO2...H2O + HO2 is about 10 times that for HO2 + HO2.     

Radical hydrogen bonding: origin of stability of radical-molecule complexes

Natural bond orbital analysis is used to investigate the nature of hydrogen bonding in a series of binary open-shell complexes involving hydroperoxy radical HO(2)...X and analogous closed-shell H(2)O(2)...X complexes (where X = H(2)O, H(2)O(2), HONO, HONO(2), CH(3)OH, HCOOH, CH(3)COOH, and H(2)SO(4)) in order to elucidate and identify the electronic factors responsible for the strength of radical hydrogen bonds. Results from this study suggest that the radical species strongly alters the strength of the characteristic n --> sigma(*) donor-acceptor interaction in the hydrogen bonding. This interaction is found to contribute to the unusually strong binding in radical-molecule complexes. These findings have important new ramifications for our fundamental understanding of radical hydrogen bonds.     

Interaction between OH radical and the water interface

Results from a theoretical study of the interactions of a OH radical on (H2O)20, (H2O)24, and (H2O)28 clusters used as a novel model of a water droplet are presented. This work shows that there is competition between OH radicals trapped on the surface and those encapsulated inside of a water cage. This is contrary to previous findings of HO2 radical interactions with water clusters. Natural bond orbital (NBO) analysis is used to analyze the bonding feature of OH to help explain the difference in behavior between OH and HO2 radicals toward a water surface.     

Tropospheric OH and HO(2) radicals: field measurements and model comparisons

The hydroxyl radical, OH, initiates the removal of the majority of trace gases in the atmosphere, and together with the closely coupled species, the hydroperoxy radical, HO(2), is intimately involved in the oxidation chemistry of the atmosphere. This critical review discusses field measurements of local concentrations of OH and HO(2) radicals in the troposphere, and in particular the comparisons that have been made with numerical model calculations containing a detailed chemical mechanism. The level of agreement between field measurements of OH and HO(2) concentrations and model calculations for a given location provides an indication of the degree of understanding of the underlying oxidation chemistry. We review the measurement-model comparisons for a range of different environments sampled from the ground and from aircraft, including the marine boundary layer, continental low-NO(x) regions influenced by biogenic emissions, the polluted urban boundary layer, and polar regions. Although good agreement is found for some environments, there are significant discrepancies which remain unexplained, a notable example being unpolluted, forested regions. OH and HO(2) radicals are difficult species to measure in the troposphere, and we also review changes in detection methodology, quality assurance procedures such as instrument intercomparisons, and potential interferences.     

Oxidative degradation of water - soluble polyethers by HO• and HO2• generated photochemically: Ft-ir studies

Two water - soluble polyethers, poly(ethylene oxide) and poly(methyl vinyl ether) were UV irradiated in hydrogen peroxide (H₂O₂) solutions. It has been shown that HO• and HO₂• radicals accelerate oxidative degradation of these polymers. Hydroxy (HO•) and probably hydroperoxy (HO₂•) radicals can abstract hydrogen from methylene groups in both polymers. As a result of further oxidative reactions, different carbonyl, hydroxy and hydroperoxy groups are formed. A mechanism for the formation of these groups has been proposed.     

Role of interstitial voids in oxides on formation and stabilization of reactive radicals: interstitial HO2 radicals in F2-laser-irradiated amorphous SiO2

A procedure to produce stable hydroperoxy radicals (HO*2) in bulk amorphous SiO(2) (a-SiO(2)) has been developed. Oxygen molecules incorporated in the interstitial voids in a-SiO(2) react with mobile hydrogen atoms (H(0)) generated by the photolysis of silanol (SiOH) groups with F(2)-laser light (lambda = 157 nm, hnu = 7.9 eV), resulting in the efficient creation of interstitial HO*2. The high yield of HO*2 suggests that the collisions of the reaction intermediate with the void wall play an important role in dissipating the excess energy of the intermediate instead of the triple collision observed in the gas phase reaction. The resultant HO*2 is thermally stable up to 100 degrees C.     

Protonation of water clusters induced by hydroperoxyl radical surface adsorption

We have investigated the HO(2) adsorption and acid dissociation process on the surface of (H(2)O)(20) and (H(2)O)(21) clusters by using quantum-chemistry calculations. Our results show that the radical forms a stable hydrogen-bond complex on the cluster. The HO(2) acid dissociation is more favorable in the case of the (H(2)O)(21) cluster, for which the inner water molecule plays a crucial role. In fact, acid dissociation of HO(2) is found to occur in two steps. The first step involves H(2) O autoionization in the cluster, and the second one involves the proton transfer from the HO(2) radical to the hydroxide anion. The presence of the HO(2) radicals on the surface of the cluster facilitates water autoionization in the cluster.     

Oxidation of ethyne and But-2-yne. 2. Master equation simulations

The aim of this study is to improve understanding of the tropospheric oxidation of ethyne (acetylene, C2H2) and but-2-yne, which takes place in the presence of HO and O2. The details of the potential energy hypersurface have been discussed in a previous article [Maranzana et al., J. Phys. Chem. A 2008, 112, XXXX]. For both molecules, the initial addition of HO radical to the triple bond is followed by addition of O2 to form peroxyl radicals. In both reaction systems, the peroxyl radicals take two isomeric forms, E1 and E2 for ethyne and e1 and e2 for but-2-yne. Energy transfer parameters (alpha = 250 cm-1) for the ethyne system were obtained by simulating laboratory data for N2 buffer gas, where O2 was not present. In simulations of C2H2 + HO when O2 is present, E1 reacts completely and E2 reacts almost completely, before thermalization. Radical E1 produces formic acid ( approximately 44%) and E2 gives glyoxal ( approximately 53%), in quite good agreement with experiments. For but-2-yne, pressure-dependent laboratory data are too scarce to obtain energy transfer parameters directly, so simulations were carried out for a range of values: alpha = 200-900 cm-1. Excellent agreement with the available experimental yields at atmospheric pressure was obtained with alpha = 900 cm-1. Two reaction channels are responsible for acetic acid formation, but one is clearly dominant. Biacetyl is produced by reactions of e1 and, to a minor extent, e2. The peroxyl radical e2 leads to less than 8% of all products. Vinoxyl radical (which has been reported in experiments involving C2H2 + HO) and products of its reactions are predicted to be negligible under atmospheric conditions.     

Solution 1H, 15N NMR spectroscopic characterization of substrate-bound, cyanide-inhibited human heme oxygenase: water occupation of the distal cavity

A solution NMR spectroscopic study of the cyanide-inhibited, substrate-bound complex of uniformly (15)N-labeled human heme oxygenase, hHO, has led to characterization of the active site with respect to the nature and identity of strong hydrogen bonds and the occupation of ordered water molecules within both the hydrogen bonding network and an aromatic cluster on the distal side. [(1)H-(15)N]-HSQC spectra confirm the functionalities of several key donors in particularly robust H-bonds, and [(1)H-(15)N]HSQC-NOESY spectra lead to the identification of three additional robust H-bonds, as well as the detection of two more relatively strong H-bonds whose identities could not be established. The 3D NMR experiments provided only a modest, but important, extension of assignments because of the loss of key TOCSY cross-peaks due to the line broadening from a dynamic heterogeneity in the active site. Steady-state NOEs upon saturating the water signal locate nine ordered water molecules in the immediate vicinity of the H-bond donors, six of which are readily identified in the crystal structure. The additional three are positioned in available spaces to account for the observed NOEs. (15)N-filtered steady-state NOEs upon saturating the water resonances and (15)N-filtered NOESY spectra demonstrate significant negative NOEs between water molecules and the protons of five aromatic rings. Many of the NOEs can be rationalized by water molecules located in the crystal structure, but strong water NOEs, particularly to the rings of Phe47 and Trp96, demand the presence of at least an additional two immobilized water molecules near these rings. The H-bond network appears to function to order water molecules to provide stabilization for the hydroperoxy intermediate and to serve as a conduit to the active site for the nine protons required per HO turnover.     

A calibration method for measurement of small alkyl organic peroxy radicals by chemical amplifier.

A new method is proposed to determine the calibration factor (CF) of methyl and ethyl peroxy radicals in a chemical amplifier. The radical source comes from the reactions of excess methane and ethane, respectively, with known concentrations of OH radicals generated by the photolysis of water vapor at 184.9 nm in air in a flow tube. This yields a mixed radical source with equal amounts of HO2 and RO2 (R = CH3, C2H5). The CF for RO2 can be derived from the CF for HO2 and an average CF for the mixed radicals. The reliability of the method was evaluated by comparing the CF ratios of RO2 to HO2 obtained from both the experiments and theoretical calculations.     

Determination of equilibrium constants for the reaction between acetone and HO2 using infrared kinetic spectroscopy

The reaction between the hydroperoxy radical, HO(2), and acetone may play an important role in acetone removal and the budget of HO(x) radicals in the upper troposphere. We measured the equilibrium constants of this reaction over the temperature range of 215-272 K at an overall pressure of 100 Torr using a flow tube apparatus and laser flash photolysis to produce HO(2). The HO(2) concentration was monitored as a function of time by near-IR diode laser wavelength modulation spectroscopy. The resulting [HO(2)] decay curves in the presence of acetone are characterized by an immediate decrease in initial [HO(2)] followed by subsequent decay. These curves are interpreted as a rapid (<100 μs) equilibrium reaction between acetone and the HO(2) radical that occurs on time scales faster than the time resolution of the apparatus, followed by subsequent reactions. This separation of time scales between the initial equilibrium and ensuing reactions enabled the determination of the equilibrium constant with values ranging from 4.0 × 10(-16) to 7.7 × 10(-18) cm(3) molecule(-1) for T = 215-272 K. Thermodynamic parameters for the reaction determined from a second-law fit of our van't Hoff plot were Δ(r)H°(245) = -35.4 ± 2.0 kJ mol(-1) and Δ(r)S°(245) = -88.2 ± 8.5 J mol(-1) K(-1). Recent ab initio calculations predict that the reaction proceeds through a prereactive hydrogen-bonded molecular complex (HO(2)-acetone) with subsequent isomerization to a hydroxy-peroxy radical, 2-hydroxyisopropylperoxy (2-HIPP). The calculations differ greatly in the energetics of the complex and the peroxy radical, as well as the transition state for isomerization, leading to significant differences in their predictions of the extent of this reaction at tropospheric temperatures. The current results are consistent with equilibrium formation of the hydrogen-bonded molecular complex on a short time scale (100 μs). Formation of the hydrogen-bonded complex will have a negligible impact on the atmosphere. However, the complex could subsequently isomerize to form the 2-HIPP radical on longer time scales. Further experimental studies are needed to assess the ultimate impact of the reaction of HO(2) and acetone on the atmosphere.     

Interstitial OH radicals in F2-laser-irradiated bulk amorphous SiO2

An interstitial hydroxyl radical (HO*) has been generated in bulk amorphous SiO2 (a-SiO2) loaded with interstitial H2O molecules and exposed to F2 laser light (hnu = 7.9 eV, lambda = 157 nm) at 77 K. F2 laser light dissociates an O-H bond of interstitial H2O into a pair of hydrogen atom (H0) and HO*. The resultant H0 disappears below 150 K, whereas HO* is detectable after thermal annealing at 200 K. The electron paramagnetic resonance (EPR) signal of the interstitial HO* recorded at 77 K is similar to that formed in amorphous ice, indicating that HO* is confined in an orthorhombic field by hydrogen bonding, probably with adjacent H2O molecules, silanol (SiOH) groups, and bridging oxygen atoms in the a-SiO2 network.     

Reaction mechanism between carbonyl oxide and hydroxyl radical: a theoretical study

The reaction mechanism of carbonyl oxide with hydroxyl radical was investigated by using CASSCF, B3LYP, QCISD, CASPT2, and CCSD(T) theoretical approaches with the 6-311+G(d,p), 6-311+G(2df, 2p), and aug-cc-pVTZ basis sets. This reaction involves the formation of H2CO + HO2 radical in a process that is computed to be exothermic by 57 kcal/mol. However, the reaction mechanism is very complex and begins with the formation of a pre-reactive hydrogen-bonded complex and follows by the addition of HO radical to the carbon atom of H2COO, forming the intermediate peroxy-radical H2C(OO)OH before producing formaldehyde and hydroperoxy radical. Our calculations predict that both the pre-reactive hydrogen-bonded complex and the transition state of the addition process lie energetically below the enthalpy of the separate reactants (DeltaH(298K) = -6.1 and -2.5 kcal/mol, respectively) and the formation of the H2C(OO)OH adduct is exothermic by about 74 kcal/mol. Beyond this addition process, further reaction mechanisms have also been investigated, which involve the abstraction of a hydrogen of carbonyl oxide by HO radical, but the computed activation barriers suggest that they will not contribute to the gas-phase reaction of H2COO + HO.     

Ab initio study of ternary radical–molecule complexes between HCN(HNC) and HO(HS) species

MP2 calculations with the cc-pVTZ basis set were used to analyze the intermolecular interactions in ternary radical–molecule complexes between HCN(HNC) and HO(HS) species, in gas phase and in water media. Particular attention was given to parameters such as the cooperative energies and many-body interaction energies. The results indicate that hydrogen bonding between two HCN(HNC) molecules gives more stability to triads than hydrogen bonding between HCN(HNC) and OH(SH) species. The electronic properties of the complexes were analyzed using the parameters derived from the atoms in molecules methodology. The water media has an enhancing influence on the stabilities of studied clusters versus the ones obtained in gas phase.     

Radicals produced by gamma-irradiation of hyperquenched glassy water containing 2'-deoxyguanosine-5'-monophosphate

Hyperquenched glassy water (HGW) has been suggested as the best model for liquid water, to be used in low-temperature studies of indirect radiation effects on dissolved biomolecules (Bednarek et al. J. Am. Chem. Soc. 1996, 118, 9387). In the present work, these effects are examined by X-band electron spin resonance spectroscopy (ESR) in gamma-irradiated HGW matrix containing 2'-deoxyguanosine-5'-monophosphate. Analysis of the complex ESR spectra indicates that, in addition to OH(*) and HO2(*) radicals generated by water radiolysis, three species are trapped at 77 K:(i) G(C8)H(*) radical, the H-adduct to the double bond at C8; (ii) G(- *) radical anion, the product of electron scavenging by the aromatic ring of the base; and (iii) dR(-H)(*) radicals formed by H abstraction from the sugar moiety, predominantly at the C'5 position. We discuss the yields of the radicals, their thermal stability and transformations, as well as the effect of photobleaching. This study confirms our earlier suggestion that in HGW the H atom addition/abstraction products are created at 77 K in competition with HO2(*) radicals, in a concerted process following ionization of water molecule at L-type defect sites of the H-bonded matrix. The lack of OH(*) reactivity toward the solute suggests that the H-bonded structure in HGW is much more effective in recombining OH(*) radicals than that of aqueous glasses obtained from highly concentrated electrolyte solutions. Furthermore, complementary experiments for the neat matrix have provided evidence that HO2(*) radicals are not the product of H atom reaction with molecular oxygen, possibly generated by ultrasounds used in the process of sample preparation.     

Direct measurements of HOx radicals in the marine boundary layer: testing the current tropospheric chemistry mechanism

OH and HO(2) radicals, atmospheric detergents, and the reservoir thereof, play central roles in tropospheric chemistry. In spite of their importance, we had no choice but to trust their concentrations predicted by modeling studies based on known chemical processes. However, recent direct measurements of these radicals have enabled us to test and revise our knowledge of the processes by comparing the predicted and observed values of the radical concentrations. We developed a laser-induced fluorescence (LIF) instrument and successfully observed OH and HO(2) at three remote islands of Japan (Oki Island, Okinawa Island, and Rishiri Island). At Okinawa Island, the observed daytime level of HO(2) agreed closely with the model estimates, suggesting that the photochemistry at Okinawa is well described by the current chemistry mechanism. At Rishiri Island, in contrast, the observed daytime level of HO(2) was consistently much lower than the calculated values. We proposed that iodine chemistry, usually not incorporated into the mechanism, is at least partly responsible for the discrepancy in the results. At night, HO(2) was detected at levels greater than 1 pptv at all three islands, suggesting the presence of processes in the dark that produce radicals. We showed that ozone reactions with unsaturated hydrocarbons, including monoterpenes, could significantly contribute to radical production.     

Uncovering the fundamental chemistry of alkyl + O2 reactions via measurements of product formation

The reactions of alkyl radicals (R) with molecular oxygen (O(2)) are critical components in chemical models of tropospheric chemistry, hydrocarbon flames, and autoignition phenomena. The fundamental kinetics of the R + O(2) reactions is governed by a rich interplay of elementary physical chemistry processes. At low temperatures and moderate pressures, the reactions form stabilized alkylperoxy radicals (RO(2)), which are key chain carriers in the atmospheric oxidation of hydrocarbons. At higher temperatures, thermal dissociation of the alkylperoxy radicals becomes more rapid and the formation of hydroperoxyl radicals (HO(2)) and the conjugate alkenes begins to dominate the reaction. Internal isomerization of the RO(2) radicals to produce hydroperoxyalkyl radicals, often denoted by QOOH, leads to the production of OH and cyclic ether products. More crucially for combustion chemistry, reactions of the ephemeral QOOH species are also thought to be the key to chain branching in autoignition chemistry. Over the past decade, the understanding of these important reactions has changed greatly. A recognition, arising from classical kinetics experiments but firmly established by recent high-level theoretical studies, that HO(2) elimination occurs directly from an alkylperoxy radical without intervening isomerization has helped resolve tenacious controversies regarding HO(2) formation in these reactions. Second, the importance of including formally direct chemical activation pathways, especially for the formation of products but also for the formation of the QOOH species, in kinetic modeling of R + O(2) chemistry has been demonstrated. In addition, it appears that the crucial rate coefficient for the isomerization of RO(2) radicals to QOOH may be significantly larger than previously thought. These reinterpretations of this class of reactions have been supported by comparison of detailed theoretical calculations to new experimental results that monitor the formation of products of hydrocarbon radical oxidation following a pulsed-photolytic initiation. In this article, these recent experiments are discussed and their contributions to improving general models of alkyl + O(2) reactions are highlighted. Finally, several prospects are discussed for extending the experimental investigations to the pivotal questions of QOOH radical chemistry.     

The Viologen Cation Radical Pimer: A Case of Dispersion‐Driven Bonding

The π bonds between organic radicals have generated excitement as an orthogonal interaction for designing self‐assembling architectures in water. A systematic investigation of the effect of the viologen cation radical structure on the strength and nature of the pimer bond is provided. A striking and unexpected feature of this π bond is that the bond strength is unchanged by substitution with electron‐donating groups or withdrawing groups or with increased conjugation. Furthermore, the interaction is undiminished by sterically bulky N ‐alkyl groups. Theoretical modeling indicates that strong dispersion forces dominate the interaction between the radicals, rationalizing the insensitivity of the bonding interaction to substituents: The stacking of polarizable π radicals leads to attractive dispersion forces in excess of typical dispersion interactions of small molecules and helps overcome the Coulombic repulsion of bringing two cationic species into contact.     

Selective degradation of lignin and elimination of HO radicals in pulps by O_3 and UV laser flash irradiation

HO radical is an aggressive reagent to abstract hydrogen from diverse substitutes and lead them to degradation, however, in reaction of active oxygen species with lignins, complex phenolic polymers, in dispersed lignocellulose such as pulp for environment-benign delignification, HO radicals should be eliminated as more as possible to prevent cellulose from unfavorably concomitant degradation. A reaction system of O3 is constructed under UV laser flash irradiation, and HO radicals are controlled efficiently by it. A new mechanism is proposed, for the first time, that O radicals generated from reaction of O3 with UV laser flash irradiation might be the contributor to scavenge HO radicals.