A 15N NMR investigation of some azolopyridines

¹⁵N NMR chemical shift data are presented for 14 azolopyridines, together with the results of INDO/S-SOS calculations of nitrogen shieldings. Previous ¹⁴N NMR results for some of these compounds are reinterpreted. The ¹⁴N data and their assignments are shown to be reliable for the indolizine nitrogen atom from arguments based on relative line widths. The pyridine-type nitrogens are more reliably assigned from the ¹⁵N spectra combined with the results of the INDO/S-SOS calculations for individual molecules. A combination of ¹⁴N and ¹⁵N NMR spectra, together with the shielding calculations, provides a basis for unambiguous assignments of all the various nitrogen environments considered.     

15N NMR substituent effects in pyridines and pyrimidines

¹⁵N chemical shifts of 32 substituted pyridines and 19 substituted pyrimidines, together with additional data from the literature, are used to evalute substituent increments, A_i and A_ik, in the respective series. Differential chemical shifts, Δδ(N), correlate with corresponding Δδ(C) values whereby, on the ppm scale, nitrogen shifts are approximately three times more sensitive towards substituents than carbon shifts. The ¹⁵N increments have proven additive and useful for assignment purposes.     

Substituent effects on 15N and 13C NMR chemical shifts of 3-phenylisoxazoles: a theoretical and spectroscopic study

The synthesis and assignment of 15N and 13C NMR signals of the isoxazole ring in a series of para-substituted 3-phenyl derivatives are reported. DFT calculations of 15N and 13C chemical shifts are presented and compared to observed values. Substituent effects are interpreted in terms of the Hammett correlation and calculated bond orders.     

A theoretical investigation of hydrogen bonding effects on oxygen and hydrogen chemical shielding tensors of aspirin

A computational investigation was carried out to characterize the ¹⁷O and ¹H chemical shielding (CS) tensors in crystalline aspirin. It was found that O–H⋯O and C–H⋯O hydrogen bonds around the aspirin molecule in the crystal lattice have a different influence on the calculated ¹⁷O and ¹H CS eigenvalues and their orientations in the molecular frame of axes. The calculations were performed with the BLYP, B3LYP, and M06 functionals employing 6-311++G(d,p) standard basis set. Calculated CS tensors were used to evaluate the ¹⁷O and ¹H chemical shift isotropy (δ_iso) and anisotropy (Δσ) in crystalline aspirin, which are in reasonable agreement with available experimental data. The difference between the calculated NMR parameters of the monomer and molecular clusters shows how much hydrogen-bonding interactions affect the CS tensors of each nucleus.     

Deuterium isotope effects on 13C and 15N nuclear shielding in o-hydroxyazo dyes

Deuterium isotope effects on the ¹³C and ¹⁵N nuclear shieldings of o-hydroxyazo compounds are described. Both the direct and the equilibrium contributions were determined. Large direct deuterium isotope effects on ¹⁵N nuclear shieldings for ¹Δ, ²Δ and ⁴Δ and negative Δ¹J(¹⁵NH) [D] values were observed. Isotope effects on ¹⁵N nuclear shieldings, because of their magnitudes, are shown to be very useful in determining changes in the azo–hydrazone equilibrium. Isotope effects on ¹³C nuclear shieldings are smaller, but the effects observed at the carbon resonances of the N-phenyl ring are likewise very useful in determining the shift in the equilibrium. Deuterium substitution leads in all cases to a shift in the equilibrium so that the content of the predominant form of the protio compound is increased.     

An NMR and quantum mechanical investigation of solvent effects on conformational equilibria of butanedinitrile

Vicinal proton-proton NMR couplings and ab initio quantum mechanics have been used to investigate solvent effects on conformational equilibria of butanedinitrile. The trans and gauche conformations are about equally favored at room temperature in solvents of low dielectric constant while the equilibrium is essentially the statistical proportions of one-third trans and two-thirds gauche in water with a high dielectric constant. The coupling assignments were confirmed with the aid of stereospecific deuterium-labeled (R,R or S,S)-1,2-dideuteriobutanedinitrile. The calculations support the observed trends. Similar results were observed for 1,2-dibromo- and dichloroethanes.     

NMR studies in the heterocyclic series XXIV—1H, 13C and 15N study of 15N labelled indazoles

The ¹⁵N chemical shifts and ¹H? ¹⁵N and ¹³C? ¹⁵N coupling constants of nine monolabelled indazoles were measured and assigned. The experimental values are discussed in terms of the indazolic and iso-indazolic structures, and compared with literature data for other related heterocycles. All the results are consistent with an N-1(H) tautomeric structure for indazole in DMSO-d₆.     

Conformational analysis of cis-2-halocyclohexanols; solvent effects by NMR and theoretical calculations

Conformational problems often involve very small energy differences, even low as 0.5 kcal mol(-1). This accuracy can be achieved by theoretical methods in the gas phase with the appropriate accounting of electron correlation. The solution behavior, on the other hand, comprises a much greater challenge. In this study, we conduct and analysis for cis-2-fluoro-, cis-2-chloro-, and cis-2-bromocyclohexanol using low temperature NMR experiments and theoretical calculations (DFT, perturbation theory, and classical molecular dynamics simulations). In the experimental part, the conformers' populations were measured at 193 K in CD(2)Cl(2), acetone-d(6), and methanol-d(4) solutions; the preferred conformer has the hydroxyl group in the equatorial and the halogen in the axial position (ea), and its population stays at about 60-70%, no matter the solvent or the halogen. Theoretical calculations, on the other hand, put the ae conformer at a lower energy in the gas phase (MP2/6-311++G(3df,2p)). Moreover, the theoretical calculations predict a markedly increase in the conformational energy on going from fluorine to bromine, which is not observed experimentally. The solvation models IEF-PCM and C-PCM were tested with two different approaches for defining the atomic radii used to build the molecular cavity, from which it was found that only with explicit consideration of hydrogens can the conformational preference be properly described. Molecular dynamic simulations in combination with ab initio calculations showed that the ea conformer is slightly favored by hydrogen bonding.     

Experimental and theoretical investigation on the relative stability of the PdS2- and pyrite-type structures of PdSe2

Under ambient condition PdSe2 has the PdS2-type structure. The crystal structure of PdSe2 under pressure (up to 30 GPa) was investigated at room temperature by X-ray diffraction in an energy-dispersive configuration using a diamond anvil cell with a mixture of water/ethanol/methanol as a pressure transmitting medium. A reversible structural transition from the PdS2-type to the pyrite-type structure occurs around 10 GPa, and the applied pressure reduces the spacing between adjacent 2/proportional to [PdSe2] layers of the PdS2-type structure to form the three-dimensional lattice of the pyrite-type structure. First principles and extended Hückel electronic band structure calculations were carried out to confirm the observed pressure-induced structural changes. We also examined why the isoelectronic analogues NiSe2 and PtSe2 adopt structures different from the PdS2-type structure on the basis of qualitative electronic structure considerations.     

The 15N NMR study of silatranes

Various silatrane compounds were studied by means of ¹⁵N NMR spectroscopy. The quantum chemical calculations of some of the compounds were carried out using CNDO/2 method. The following correlations were obtained, i.e., ¹⁵N chemical shifts vary linearly with Taft's polar substituent constants (s) of the substituents R on the silicon atoms, and also with the net charge densities on the nitrogen atoms. From both experimental and theoretical aspects, it could be concluded that the SiN dative bonds in a series of silatrane compounds actually exist.     

A theoretical study of the relative stability of the isomeric forms of N2O3

The electronic structure, geometrical parameters and relative stability of the isomeric forms of N₂O₃ are analysed by means of ab initio calculations. Total energies of the different isomers are given. The energy difference between the most stable conformers of the symmetric N₂O₃ is 4.31 Kcal mol^–1 as provided by 6–31G basis set. The height of the rotational barrier determined by the ab initio technique is 7.12 kcal mol^–1.Member of the Carrera del Investigador CICPBA, R. Argentina.Member of the Carrera del Investigador CONICET, R. Argentina.Predoctoral fellow of CONICET, R. Argentina.     

Theoretical and experimental 13C and 15N NMR investigation of guanylhydrazones in solution

Experimental and theoretical ¹⁵N and ¹³C NMR data for the three nitrobenzaldehyde guanylhydrazones are reported. The theoretical data were obtained using sequential molecular dynamics/quantum mechanics methodology for the calculation of flexible molecules in a condensed phase, followed by the use of the GIAO/DFT method with the 6–311G** basis set. The experimental ¹⁵N chemical shifts for the guanylhydrazones are compared with the calculated shifts. Copyright © 2003 John Wiley & Sons, Ltd.     

A theoretical investigation on the isomerism and the NMR properties of thiosemicarbazones

Hybrid density functional theory calculations at the mPW1PW91/6-31+G(d,p) level of theory have been used to investigate the optimized structures and other molecular properties of five different series of thiosemicarbazones. The investigated compounds were obtained from acenaphthenequinone, isatin and its derivatives, and alloxan. The focus of the study is the isomerism and the NMR characterization of these thiosemicarbazones. It was found that only one isomer is expected for thiosemicarbazones and methylthiosemicarbazones, while for dimethylthiosemicarbazones, two isomers are possible. All investigated thiosemicarbazones exhibit a hydrazinic proton that is highly deshielded and resonates far downfield in the proton NMR spectra. This proton is a part of a characteristic sixmembered ring, and its NMR properties are a result of its strong, intermolecular hydrogen bond. The relationships between the calculated ¹H and ¹³C NMR chemical shifts and various geometric parameters are reported.      

15N Chemical shielding in glycyl tripeptides: measurement by solid-state NMR and correlation with X-ray structure

15N chemical shielding parameters are reported for central glycyl residues in crystallographically characterized tripeptides with alpha-helix, beta-strand, polyglycine II (3(1)-helix), and extended structures. Accurate values of the shielding components (2-5 ppm) are determined from MAS and stationary spectra of peptides containing [2-(13)C,(15)N]Gly. Two dipolar couplings, (1)H-(15)N and (13)C(alpha)-(15)N, are used to examine (15)N shielding tensor orientations in the molecular frame and the results indicate that the delta(11), delta(33) plane of the shielding tensor is not coincident with the peptide plane. The observed isotropic shifts, which vary over a range of 13 ppm, depend on hydrogen bonding (direct and indirect) and local conformation. Tensor spans, delta(span) = delta(11) - delta(33), and their deviations from axial symmetry, delta(dev) = delta(22) - delta(33), vary over a larger range and are grouped according to 2 degrees structure. Augmented by previously reported (13)C(alpha) shielding parameters, a prediction scheme for the 2 degrees structure of glycyl residues in proteins based on shielding parameters is proposed.     

A 15N NMR investigation of a series of benzotriazinones and related antitumour heterocycles

A series of 3‐substituted 1,2,3‐benzotriazin‐4‐ones, 1 and 2, were synthesized by standard methods and the ¹⁵N NMR spectra were recorded. All spectra were obtained using the natural abundance of the nitrogen‐15 isotope. The chemical shifts appear in the normal range for N‐1, N‐2 and N‐3 of the triazine ring, and also correlate with the chemical shifts in the spectra of the imidazolotriazinone, 4, and the imidazolotetrazinone, 5. Significantly, the spectra of 1a, 2 and 4, recorded with full NOE, show inversion of the singlet assigned to N‐3, demonstrating that these compounds exist in the tautomeric form shown. The structure of the 4‐iminobenzotriazinone (3) was confirmed by this ¹⁵N NMR analysis. The spectrum shows a signal for the NH‐bearing imino‐nitrogen atom, which is an inverted singlet in the NOE spectrum, whereas the signal from the N‐3 atom of 3 is not inverted in the NOE spectrum. Copyright © 2002 John Wiley & Sons, Ltd.     

(1)H NMR investigation of solvent effects in aromatic stacking interactions

One of the marquis challenges in modern Organic Chemistry concerns the design and synthesis of abiotic compounds that emulate the exquisite complex structures and/or functions of biological macromolecules. Oligomers possessing the propensity to adopt well-defined compact conformations, or foldamers, have been attained utilizing hydrogen bonding, torsional restriction, and solvophobic interactions.(1) In this laboratory, aromatic electron donor--acceptor interactions have been exploited in the design of aedamers--foldamers that adopt a novel, pleated secondary structure in aqueous solution. Herein is reported detailed (1)H NMR binding studies of aedamer monomers that were carried out in solvents and solvent mixtures covering a broad polarity range. Curve-fitting analysis of the binding data using a model that incorporated the formation of higher order and self-associated complexes yielded a linear free energy relationship between the free energy of complexation and the empirical solvent polarity parameter, E(T)(30). From these studies, the association of electron-rich and electron-deficient aedamer monomers was seen to be driven primarily by hydrophobic interactions in polar solvents. However, the magnitude of these interactions is modulated to a significant extent by the geometry of the donor--acceptor complex, which, in turn, is dictated by the electrostatic complementarity between the electron-deficient and electron-rich aromatic faces of the monomers.     

Thermal and solvent effects on NMR indirect spin-spin coupling constants of a prototypical Chagas disease drug

NMR J-couplings across hydrogen bonds reflect the static and dynamic character of hydrogen bonding. They are affected by thermal and solvent effects and can therefore be used to probe such effects. We have applied density functional theory (DFT) to compute the NMR (n)J(N,H) scalar couplings of a prototypical Chagas disease drug (metronidazole). The calculations were done for the molecule in vacuo, in microsolvated cluster models with one or few water molecules, in snapshots obtained from molecular dynamics simulations with explicit water solvent, and in a polarizable dielectric continuum. Hyperconjugative and electrostatic effects on spin-spin coupling constants were assessed through DFT calculations using natural bond orbital (NBO) analysis and atoms in molecules (AIM) theory. In the calculations with explicit solvent molecules, special attention was given to the nature of the hydrogen bonds formed with the solvent molecules. The results highlight the importance of properly incorporating thermal and solvent effects into NMR calculations in the condensed phase.     

A theoretical investigation of the relative stability of hydrated glycine and methylcarbamic acid--from water clusters to interstellar ices

We have theoretically investigated how the low-energy conformers of the neutral and the zwitterionic forms of glycine as well as methylcarbamic acid are stabilized by the presence water. The MP2/6-311++G(d,p) method was utilized to conduct calculations on glycine and methylcarbamic acid in both isolated clusters and in clusters embedded in the conductor-like polarizable continuum model (C-PCM), where the clusters explicitly contain between one and ten water molecules. The neutral forms of glycine and methylcarbamic acid were found to have similar hydration energies, whereas the neutral methylcarbamic acid was determined to be approximately 32 kJ mol(-1) more stable than the neutral glycine in the isolated clusters and 30 kJ mol(-1) more stable in the C-PCM embedded clusters. Both the number and strength of the hydrogen bonding interactions between water and the zwitterions drive the stability. This lowers the relative energy of the glycine zwitterion from 50 kJ mol(-1) above neutral glycine, when there are two water molecules in the clusters to 11 kJ mol(-1) below for the clusters containing ten water molecules. For the methylcarbamic acid clusters with two water molecules, the zwitterion is 51 kJ mol(-1) higher in energy than the neutral form, but it remains 13 kJ mol(-1) above the neutral methylcarbamic acid in the clusters containing ten water molecules. When the bulk water environment is simulated by the C-PCM calculations, we find both the methylcarbamic acid and glycine zwitterionic forms have similar energies at 20 kJ mol(-1) above the neutral methylcarbamic acid energy and 10 kJ mol(-1) lower than the neutral glycine energy. Although neither methylcarbamic acid nor glycine have been detected in the interstellar medium yet, our findings indicate that methylcarbamic acid is the more stable product from methylamine and carbon dioxide reactions in a water ice. This suggests that methylcarbamic acid likely plays a role in the intermediate steps if glycine is formed in the interstellar medium.     

13C NMR study of halogen bonding of haloarenes: measurements of solvent effects and theoretical analysis

Solvent effects on the NMR spectra of symmetrical (X = F (1), X = Cl (2), X = Br (3), X = I (4), X = NO2 (5), X = CN (6)) and unsymmetrical (X = I, Y = MeO (7), Y = PhO (8)) para-disubstituted acetophenone azines X-C6H4-CMe=N-N=CMe-C6H4-Y and of models X-C6H4-CMe=N-Z (X = I, Z = H (9), Z = NH2 (10)), 4-iodoacetophenone (11), and iodobenzene (12) were measured in CDCl(3), DMSO, THF, pyridine, and benzene to address one intramolecular and one intermolecular issue. Solvent effects on the (13)C NMR spectra are generally small, and this finding firmly establishes that the azine bridge indeed functions as a "conjugation stopper," an important design concept in our polar materials research. Since intermolecular halogen bonding of haloarenes do occur in polar organic crystalline materials, the NMR solution data pose the question as to whether the absence of solvent shifts indicates the absence of strong halogen bonding in solution. This question was studied by the theoretical analysis of the DMSO complexes of iodoarenes 4, 9-12, and of iodoacetylene. DFT and MP2 computations show iodine bonding, and characteristic structural and electronic features are described. The nonrelativistic complexation shifts and the change in the spin-orbit induced heavy atom effect of iodine compensate each other, and iodine bonding thus has no apparent effect on Ci in the iodoarenes. For iodides, complexation by DMSO occurs and may or may not manifest itself in the NMR spectra. The absence of complexation shifts in the NMR spectra of halides does not exclude the occurrence of halogen bonding in solution.