Van Der Waals heterogeneous layer‐layer carbon nanostructures involving π···H‐C‐C‐H···π···H‐C‐C‐H stacking based on graphene and graphane sheets

Noncovalent interactions involving aromatic rings, such as π···π stacking, CH···π are very essential for supramolecular carbon nanostructures. Graphite is a typical homogenous carbon matter based on π···π stacking of graphene sheets. Even in systems not involving aromatic groups, the stability of diamondoid dimer and layer‐layer graphane dimer originates from C − H···H − C noncovalent interaction. In this article, the structures and properties of novel heterogeneous layer‐layer carbon‐nanostructures involving π···H‐C‐C‐H···π···H‐C‐C‐H stacking based on [n ]‐graphane and [n ]‐graphene and their derivatives are theoretically investigated for n = 16–54 using dispersion corrected density functional theory B3LYP‐D3 method. Energy decomposition analysis shows that dispersion interaction is the most important for the stabilization of both double‐ and multi‐layer‐layer [n ]‐graphane@graphene. Binding energy between graphane and graphene sheets shows that there is a distinct additive nature of CH···π interaction. For comparison and simplicity, the concept of H‐H bond energy equivalent number of carbon atoms (noted as NHEQ), is used to describe the strength of these noncovalent interactions. The NHEQ of the graphene dimers, graphane dimers, and double‐layered graphane@graphene are 103, 143, and 110, indicating that the strength of C‐H···π interaction is close to that of π···π and much stronger than that of C‐H···H‐C in large size systems. Additionally, frontier molecular orbital, electron density difference and visualized noncovalent interaction regions are discussed for deeply understanding the nature of the C‐H···π stacking interaction in construction of heterogeneous layer‐layer graphane@graphene structures. We hope that the present study would be helpful for creations of new functional supramolecular materials based on graphane and graphene carbon nano‐structures. © 2017 Wiley Periodicals, Inc.     

Experimental Evidence of Intramolecular CAr–H···O=C Hydrogen Bonds in the Structure of (Diaryl)tetrahydrofuranones Using Spectroscopic Tools

The occurrence of bifurcate H‐bonds C_Ar–H···O=C in the structure of (diaryl)‐tetrahydrofuranones was experimentally demonstrated using different methods and techniques. The consistent increasing spin–spin coupling constants ¹J(C,H) of the ortho‐H‐atoms and low‐field shift of v_C=O in IR spectra of 2,2‐(diaryl)tetrahydrofuran‐3(2H)‐ones relative to their 5,5‐diaryl counterparts, as well as pronounced dependence of the ortho‐C–H H‐atoms chemical shifts on the temperature and solvent polarity along with X‐ray diffraction analysis data unambiguously point to the existence of weak C_Ar–H···O=C H‐bonds in these molecules.     

复合物HNO···H2O2内N-H···O蓝移氢键的理论研究

A theoretical study on the blue-shifted H-bond N-H…O and red-shifted H-bond O-H…O in the complexHNO…H_2O_2 was conducted by employment of both standard and counterpoise-corrected methods to calculate thegeometric structures and vibrational frequencies at the MP2/6-31G(d),MP2/6-31 G(d,p),MP2/6-311 q G(d,p),B3LYP/6-31G(d),B3LYP/6-31 G(d,p) and B3LYP/6-311 G(d,p) levels.In the H-bond N-H…O,the calcu-lated blue shift of N-H stretching frequency is in the vicinity of 120 cm~(-1) and this is indeed the largest theoreticalestimate of a blue shift in the X-H…Y H-bond ever reported in the literature.From the natural bond orbital analy-sis,the red-shifted H-bond O-H…O can be explained on the basis of the dominant role of the hyperconjugation.For the blue-shifted H-bond N-H…O,the hyperconjugation was inhibited due to the existence of significant elec-tron density redistribution effect,and the large blue shift of the N-H stretching frequency was prominently due tothe rehybridization of sp~n N-H hybrid orbital.     

Co0.50VOPO4·2H2O

The crystal structure of cobalt vanadophosphate dihydrate {systematic name: poly[diaqua‐μ‐oxido‐μ‐phosphato‐hemicobalt(II)vanadium(II)]}, Co_0.50VOPO₄·2H₂O, shows a three‐dimensional framework assembled from VO₅ square pyramids, PO₄ tetrahedra and Co[O₂(H₂O)₄] octahedra. The Co^II ions have local 4/m symmetry, with the equatorial water molecules in the mirror plane, while the V and apical O atom of the vanadyl group are located on the fourfold rotation axis and the P atoms reside on sites. The PO₄ tetrahedra connect the VO₅ polyhedra to form a planar P–V–O layer. The [Co(H₂O)₄]²⁺ cations link adjacent P–V–O layers via vanadyl O atoms to generate an unprecedented three‐dimensional open framework. Powder diffraction measurements reveal that the framework collapses on removal of the water molecules.     

Influence of substitution on the strength and nature of CH···N hydrogen bond in XCCH···NH3 complexes

The effect of substitution on the strength and nature of CH···N hydrogen bond in XCCH···NH₃ (X = F, Cl, Br, OH, H, Me) and NCH···NH₃ complexes were investigated by quantum chemical calculations. Ab initio calculations were performed using MP2 method with a wide range of basis sets. With tacking into account the BSSE and ZPVE, the values of BEs decrease. Replacement of the nonparticipatory hydrogen atom of HCCH by the electronegative atoms (F, Cl, and Br), lead to the BEs increases. The BE corresponding to the replacement of the nonparticipatory hydrogen atom of HCCH by the OH and CH₃ groups decreases. A far greater enhancement of the interaction energy arises from replacement of HCCH by the more acidic HCN. The natural bond orbital analysis and the Bader's quantum theory of atoms in molecules were also used to elucidate the interaction characteristics of these complexes. The electrostatic nature of H‐bond interactions is predicted from QTAIM analysis. In addition, the relationship between the isotropic and anisotropic chemical shifts of the bridging hydrogen and binding energy of complexes as well as electron density at N···H BCPs were investigated. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Penkvilksite‐2O: Na2TiSi4O11·2H2O

The crystal structure of synthetic penkvilksite‐2O, disodium titanium tetrasilicate dihydrate, Na₂TiSi₄O₁₁·2H₂O, a microporous titanosilicate, confirms the major features of a previous model that had been obtained by order–disorder (OD) theory from the known structure of penkvilksite‐1M. An important difference from the previous model involves the hydrogen bonding of the water molecule which, on the basis of a Raman spectrum and the finding of only one of the two H atoms, is proposed to be disordered about a fixed O–H direction. The structure of penkvilksite‐2O is based on (100) silicate layers linked by isolated TiO₆ octahedra to form a heteropolyhedral framework. The layer is strongly corrugated, based on interlaced spiral chains, and is crossed by two different channels that have an effective channel width of about 3 Å.     

Computational Study on the Unconventional Hydrogen‐Bonded F–H···C Systems

The F–H···YZ₂ (Y = C, Si, BH, A1H;Z = H, PH₃) systems were examined using density functional theory calculations. The main focus of this work is to demonstrate that the chemistry of Y(PH₃)₂ exhibits a novel feature which is a central Y atom with unexpected high basicity. Further, the hydrogen bond strength can be adjusted by the substitution of H atoms of YH₂ by PH₃ groups. The FH···C(PH₃)₂ system has the strongest hydrogen bond interaction, which is larger than a conventional hydrogen bond. In addition to electrostatic interaction, donor‐acceptor interaction also plays an important role in determining the hydrogen bond strength. Therefore, a carbon atom can not only be the hydrogen bond acceptor but also can create an unusual stabilized hydrogen bond complex. Also, X₃B–YZ₂ (X = H, F; Y = C, Si, BH, A1H;Z = PH₃, NH₃) systems were examined, and it was found that the bond strength is controlled predominately by the HOMO‐LUMO gap (ΔIP). The smaller the ΔIP, the larger the bond dissociation energy of the B–Y bond. In addition, NH₃ is a better electron‐donating group than PH₃, and thus forms the strongest donor‐acceptor interaction between X₃B and Y(NH₃)₂.     

The O···H intramolecular hydrogen bond in 4‐X‐2‐hydroxybenzaldehydes: The relationships between geometrical parameters,estimated binding energies,and NMR data

The relationships among geometrical parameters, estimated binding energies, and nuclear magnetic resonance data in –C?O···H? O? intramolecular H‐bond of some substituted 2‐hydroxybenzaldehyde have theoretically been studied by B3LYP and MP2 methods with 6‐311++G** and AUG‐cc‐PVTZ basis sets. All substituents increase estimated hydrogen bond energies E_HBs (with the exception of NO₂ and C₂H₅), which are in good correlation with geometrical parameters, topological properties of electron density calculated at O···H bond critical points and ring critical points by using atoms in molecules method, the results of natural bond orbital analysis, and calculated nuclear magnetic resonance data. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

X‐ray and neutron powder diffraction analyses of Gly·MgSO4·5H2O and Gly·MgSO4·3H2O,and their deuterated counterparts

We have identified a new compound in the glycine–MgSO₄–water ternary system, namely glycine magnesium sulfate trihydrate (or Gly·MgSO₄·3H₂O) {systematic name: catena‐poly[[tetraaquamagnesium(II)]‐μ‐glycine‐κ²O:O′‐[diaquabis(sulfato‐κO)magnesium(II)]‐μ‐glycine‐κ²O:O′]; [Mg(SO₄)(C₂D₅NO₂)(D₂O)₃]_n}, which can be grown from a supersaturated solution at ∼350 K and which may also be formed by heating the previously known glycine magnesium sulfate pentahydrate (or Gly·MgSO₄·5H₂O) {systematic name: hexaaquamagnesium(II) tetraaquadiglycinemagnesium(II) disulfate; [Mg(D₂O)₆][Mg(C₂D₅NO₂)₂(D₂O)₄](SO₄)₂} above ∼330 K in air. X‐ray powder diffraction analysis reveals that the trihydrate phase is monoclinic (space group P2₁/n), with a unit‐cell metric very similar to that of recently identified Gly·CoSO₄·3H₂O [Tepavitcharova et al. (2012). J. Mol. Struct. 1018 , 113–121]. In order to obtain an accurate determination of all structural parameters, including the locations of H atoms, and to better understand the relationship between the pentahydrate and the trihydrate, neutron powder diffraction measurements of both (fully deuterated) phases were carried out at 10 K at the ISIS neutron spallation source, these being complemented with X‐ray powder diffraction measurements and Raman spectroscopy. At 10 K, glycine magnesium sulfate pentahydrate, structurally described by the `double' formula [Gly(d₅)·MgSO₄·5D₂O]₂, is triclinic (space group P, Z = 1), and glycine magnesium sulfate trihydrate, which may be described by the formula Gly(d₅)·MgSO₄·3D₂O, is monoclinic (space group P2₁/n, Z = 4). In the pentahydrate, there are two symmetry‐inequivalent MgO₆ octahedra on sites of symmetry and two SO₄ tetrahedra with site symmetry 1. The octahedra comprise one [tetraaquadiglcyinemagnesium]²⁺ ion (centred on Mg1) and one [hexaaquamagnesium]²⁺ ion (centred on Mg2), and the glycine zwitterion, NH₃⁺CH₂COO⁻, adopts a monodentate coordination to Mg2. In the trihydrate, there are two pairs of symmetry‐inequivalent MgO₆ octahedra on sites of symmetry and two pairs of SO₄ tetrahedra with site symmetry 1; the glycine zwitterion adopts a binuclear–bidentate bridging function between Mg1 and Mg2, whilst the Mg2 octahedra form a corner‐sharing arrangement with the sulfate tetrahedra. These bridged polyhedra thus constitute infinite polymeric chains extending along the b axis of the crystal. A range of O—H…O, N—H…O and C—H…O hydrogen bonds, including some three‐centred interactions, complete the three‐dimensional framework of each crystal.     

Two modifications of a KH2PO4·HF adduct

The structures of two modifications, (I) and (II), of potassium di­hydrogenphosphate–hydro­fluoric acid (1/1), KH₂PO₄·HF, were determined at 250 and 150 K, and at 292 and 150 K, respectively. Modifications (I) and (II) crystallize from stoichiometric aqueous solutions at 295 (1) and 308 (3) K, respectively. The H atoms were located clearly from the difference Fourier maps in each modification. The two modifications differ mainly in the arrangement of the di­hydrogen­phosphate anions, i.e. (I) contains looped dimeric and tetrameric units of the di­hydrogen­phosphate ions, whereas (II) contains two types of looped tetrameric unit. In addition, both structures contain a very short F—H⃛O hydrogen bond (2.38–2.40 Å). The K⁺ ions are coordinated by O and F atoms, with similar K⃛O and K⃛F distances in both modifications.     

Hydrate schwacher und starker Basen. XI. Die Kristallstrukturen von NaOH · 3,5H2O und NaOH · 7 H2O. Eine Präzisierung

Hydrates of Weak and Strong Bases. XI. The Crystal Structures of NaOH · 3,5H₂O and NaOH · 7 H₂O. A Refinement The crystal structures of the hydrates NaOH · 3,5 H₂O (space group P2₁/c, Z = 8 formula units per unit cell; lattice parameters: a = 6.481, b = 12.460, c = 11.681 Å, β = 104.12° at ?100°C) and NaOH · 7 H₂O (P2₁/c, Z = 4; a = 7.344, b = 16.356, c = 6.897 Å, β = 92.91° at ?150°C) have been redetermined using MoKα diffractometer data. The obtained refinement of the structures, including the localization also of the H atoms for the first time, has led to new findings with respect to the H bonds. In particular, in both hydrates there is one such interaction of the rare type OH^? …? OH₂, from an OH^? ion to an H₂O molecule, i. e. with the OH^? ion as the proton donor.     

Structure and Properties of UO2(H2AsO4)2 · H2O

UO₂(H₂AsO₄)₂ · H₂O was synthesized by dissolving elemental uranium in arsenic acid (80.5%) for twelve weeks at room temperature. The resulting small crystals were transparent and of yellow‐green color. The crystal structure was refined from single‐crystal X‐ray data: C2/c, a = 1316.4(3) pm, b = 886.2(2) pm, c = 905.0(3) pm, β = 124.41(3)°, R1 = 0.023, wR2 = 0.060, 981 structure factors, and 65 variable parameters. The uranium atoms of this new structure type are coordinated by two very close oxygen atoms in linear arrangement. Four further oxygen atoms which belong to four different AsO₄ tetrahedra and the oxygen atom of the water molecule complete the 7‐fold coordination of the uranium atoms. [UO₂(H₂O)]²⁺ and two H₂AsO₄^– units form infinite electroneutral chains which are the main building units of the structure and which are interconnected by hydrogen bridging bonds. IR heating experiments show that dehydration around 500 K leads to a complete decomposition of the structure. Magnetic measurement gave a diamagnetic behavior with a susceptibility of χ = –8.68 10^–9 m³/mol in good agreement with the diamagnetic increment of the compound (χ = –8.20 10^–9 m³/mol) calculations with U⁶⁺.     

Correlation between the reactivity and spectroscopic properties of N‐substituted secondary thioamides. New intramolecular N···H+···N binding approach and proton complexes based on thioamide ligation

On the basis of a comparison of chemical shifts and wavenumbers of several secondary thioamides and amides having monocationic substituents attached to thiocarbamoyl or carbamoyl groups by a polymethylene chain, new intramolecular unconventional N···H⁺···N hydrogen bonding effects were discovered. It is argued that the CH₂—N rotation is hindered and two ⁺H···NHCH₃ non‐equivalent protons occur in a proton spectrum of hydrochloride 1a (at 10.68 and 2.77 ppm, respectively) instead of two ⁺NH₂CH₃ protons. Presumably, the above steric factors inhibit the acidic hydrolysis of 1a (stabilized by strong intramolecular N···H⁺···N hydrogen bonds) to an amide and prevent intramolecular cyclization of 2a (stabilized by strong intramolecular neutral–neutral N···HN hydrogen bonds) to a cyclic amidine. Postulation of additional dihydrogen bond formation is helpful in understanding the spectroscopic differences of 4 and 5 . The above new bonding is also compared with intramolecular N···H—N⁺ hydrogen bonds in primary amine salts 7 and 8 . In contrast to 3 , a cooperative hydrogen bonded system is observed in 9 and 10 . The weak hydrogen bonds in 7 – 10 facilitate the hydrolysis and cyclization reactions of secondary thioamides. The spectroscopic data for secondary (thio)amides are especially useful for characterizing the electronic situation at the (thio)carbamoyl nitrogen atoms and they are perfectly correlated with the reactivity. Examples of chelation of protons by thioamides ( 11 and 12 ), which contain strongly electron‐donating pyrimidine groups, are presented to show the contribution of dihydrogen bonding in the protonation reaction similar to 1 and 4 . Copyright © 2003 John Wiley & Sons, Ltd.     

Zur Darstellung und Kristallstruktur von CrSO4 · 3 H2O

Preparation and Crystal Structure of CrSO₄ · 3 H₂O Evaporating a solution of Cr²⁺ in dilute sulphuric acid at 70°C light blue crystals of CrSO₄ · 3 H₂O were grown. Its x-ray powder diffraction pattern is quite similar to that of CuSO₄ · 3 H₂O. The crystal structure refinement of CrSO₄ · 3 H₂O (space group Ce, a = 5.7056(8) Å, b = 13.211(2) Å, c = 7.485(1) Å, β = 96.73(1)°, Z = 4) from single crystal data, using the parameters of the copper compound as starting values, results in a final R-value of R = 3.8%. The surrounding of the Cr²⁺ ion can be described as a strongly elongated octahedron. The basal plane of the CrO₆-octahedron consists of three hydrate oxygen atoms and one sulphate oxygen atom. The two more distant axial oxygen atoms also belong to sulphate groups. Thus they are forming chains of alterning CrO₆-octahedra and SO₄-tetrahedra along [110] and [1–10] linked via common corners. These chains are connected via sulphate groups and by bridging hydrogen bonds to a 3-dimensional network.     

A Molecular Hexacoordinated Triorganoaluminum Compound with Trifold Si–H···Al Coordination

The synthesis of a hexacoordinate triorganoaluminum compound Al(NapSiH)₃ ( 6 ) (NapSiH = 8‐dimethylsilylnaphthyl) is reported. Three additional Si–H ··· Al contacts complete the coordination sphere around the central aluminum atom. Structural and spectroscopic evidence is provided for an activation of the Si–H bond by the aluminum Lewis acid. This activation is however small when compared to other recently described aluminum / silane complexes. These findings are supported by the results of quantum mechanical calculations, which indicate the presence of three Si–H ··· Al three center intractions in complex 6 .     

New chiral macrocyclic phosphoramidate self‐associated by an intermolecular N–H ··· O = P hydrogen bond

New macrocyclic chiral phosphoramidates containing 2,5‐diaryl‐1,3, 4‐oxadiazole and L‐alanine methyl ester units were synthesized by a convenient one‐pot procedure, X‐ray analysis of one chiral macrocycle shows that the phosphoramidate molecules are self‐associated by intermolecular N–H ··· O = P hydrogen bonds, the layer stacking along the b axis forming channels parallel to the b axis. © 2001 John Wiley & Sons, Inc. Heteroatom Chem 12:480–484, 2001     

Insights Gained by Modeling the Kinetics of Archetypal Hydrogen Atom Transfer Reactions: NH3 + ·H ⇆ H2N· + H2 and CH4 + ·H ⇆ H3C· + H2

Experimental measurements of the kinetics of the title reactions extend to temperature ranges of 1360 K for the ammonia‐hydrogen reaction and of 1602 K for the methane‐hydrogen reaction. Curved plots of ln(k) versus 1/T are obtained. Many theoretical calculations modeling these reactions routinely use tunneling corrections to match experiment. The steepness and curvatures of the plots are modeled successfully in this work and are shown to be caused solely by changes in the bond dissociation energies of the bonds involved in the reactions without invoking tunneling or any other adjustable parameters. The conclusion that tunneling does not contribute significantly to the rates in the temperature range of the measurements is in stark contrast with those theoretical calculations invoking large tunneling factors in the experimental temperature range. Support for the conclusion is provided by theoretical calculations of harmonic quantum transition state theory implementing instanton theory. There is direct experimental evidence that significant tunneling occurs in some H atom transfers, as with isotopomers of H₂ + ·H and other H transfers at very low temperatures. However, there is no direct experimental evidence of significant tunneling contributions to the rates of the title reactions in the temperature range of the measurements. Insights are gained into what specific forces must be overcome by the enthalpy of activation for reaction to occur.     

A polarizable dipole–dipole interaction model for evaluation of the interaction energies for NH···OC and CH···OC hydrogen‐bonded complexes

In this article, a polarizable dipole–dipole interaction model is established to estimate the equilibrium hydrogen bond distances and the interaction energies for hydrogen‐bonded complexes containing peptide amides and nucleic acid bases. We regard the chemical bonds N? H, C?O, and C? H as bond dipoles. The magnitude of the bond dipole moment varies according to its environment. We apply this polarizable dipole–dipole interaction model to a series of hydrogen‐bonded complexes containing the N? H···O?C and C? H···O?C hydrogen bonds, such as simple amide‐amide dimers, base‐base dimers, peptide‐base dimers, and β‐sheet models. We find that a simple two‐term function, only containing the permanent dipole–dipole interactions and the van der Waals interactions, can produce the equilibrium hydrogen bond distances compared favorably with those produced by the MP2/6‐31G(d) method, whereas the high‐quality counterpoise‐corrected (CP‐corrected) MP2/aug‐cc‐pVTZ interaction energies for the hydrogen‐bonded complexes can be well‐reproduced by a four‐term function which involves the permanent dipole–dipole interactions, the van der Waals interactions, the polarization contributions, and a corrected term. Based on the calculation results obtained from this polarizable dipole–dipole interaction model, the natures of the hydrogen bonding interactions in these hydrogen‐bonded complexes are further discussed. © 2013 Wiley Periodicals, Inc.     

Diffusion by chemical bond hopping of single O2 and H on Si(111)-7×7 surfaces

Using a variable temperature STM to trace in detail the path of single particle movement, it is possible to derive diffusion parameters of individual atoms and molecules on solid surfaces as well as to probe the mechanisms. Below ˜370 °C, O₂ molecules adsorb on Si(111)-7×7 surfaces at the top site of Si-adatoms as bright image spots. An O₂ molecule can hop between two adatom sites within the half unit cell it adsorbs via two rest-atom sites. Above this temperature, it can either hop out of the half cell, or can go through other reaction pathways. In contrast, for H atoms, the adsorption sites are rest-atom sites. An H atom darkens the rest-atom in filled state image, but the surrounding adatoms will appear brighter because of a reverse charge transfer. Above ˜280 °C, it can hop to a neighbor rest atom site within the half cell via an adatom site. The adatom in the short lived intermediate state appears darker because of the saturation of its dangling bond. Above ˜340 °C, it can hop out of the half cell via two adatom sites. Thus diffusion of H and O₂ on this surface is achieved by hopping of chemical bonds via intermediate states. We have also derived site and pathway-specific activation energies and frequency factors and the potential energy curves for the hopping of O₂ and H on Si(111)-7×7 surfaces.