Comparative Kinetic Analysis of Reversible Intermolecular Electron-Transfer Reactions between a Series of Pentaammineruthenium Complexes and Cytochrome c

In this kinetic and thermodynamic study, the reversible outer-sphere electron-transfer reactions between a series of Ru(NH(3))(5)L(3+/2+) complexes (L = etpy, py, lut) (etpy = 4-ethylpyridine; py = pyridine; lut = 3,5-lutidine) and cytochrome c were investigated as a function of ionic strength, buffer, pH, temperature, and pressure. Due to the low driving forces of these systems, it was possible to study all the reactions in both redox directions. The observed rate constants for various L are correlated on the basis of the ability of ligands on the ruthenium complex to penetrate the heme groove on cytochrome c. The measurements as a function of pressure enabled the construction of volume profiles for all investigated systems. The activation volumes for all of these processes are very similar: between -14.9 and -17.8 cm(3) mol(-)(1) for the reduction and between +14.7 and +17.8 cm(3) mol(-)(1) for the oxidation of the protein by Ru(NH(3))(5)L(2+/)(3+), respectively. The overall reaction volume varies between 27 and 35 cm(3) mol(-)(1), from which it follows that the transition state lies exactly halfway between reactant and product states on a volume basis in all cases. There is good agreement throughout between kinetic and thermodynamic data.     

Single-laboratory validation of a gas chromatography-mass spectrometry method for quantitation of 15 European priority polycyclic aromatic hydrocarbons in spiked smoke flavourings

An existing method was adapted to the purpose and validated in-house according to the IUPAC harmonised guideline for the determination of 15 EU priority polycyclic aromatic hydrocarbons (PAHs) in primary smoke condensates (PSCs) that are used to produce smoke flavourings for human consumption. Limits of detection (LOD) varied between 0.1 and 1.3 microg/kg, limits of quantitation (LOQ) between 0.5 and 4 microg/kg for the various PAHs in PSCs. The coefficient of variance of the repeatability was between 0.7% (benzo[a]pyrene) and 30% (dibenzo[a,h]pyrene) relative standard deviation, depending on the analyte. The recoveries varied between 100 and 102% (dibenzo[a,l]pyrene) and 69-83% (dibenzo[a,h]pyrene) over the analytical range of 5-35 microg/kg.     

Effect of amidoalkyl group as spacer on aggregation properties of guanidine-type surfactants

Dodecanoyl amidoalkylguanidine hydrochlorides (C(12)A(m)G, m = 2, 3, 4, 6) are cationic surfactants that have an amidoalkyl group (A(m)) as spacer between the cationic guanidine and hydrophobic groups in the molecule. The effect of the A(m) group on the aggregation properties of the surfactants was evaluated through measurements of their critical micelle concentration (cmc) value, Krafft point, phase behavior, area occupied by one molecule at the air/water interface, and micellar aggregation number. Dodecylguanidine hydrochloride (C(12)A(0)G) with no A(m) group is a unique cationic surfactant because it exhibits a strong tendency for self-assembly when compared with common ionic surfactants, due to the hydrogen bonding between its guanidine groups in addition to the hydrophobic interaction between its alkyl chains [M. Miyake, K. Yamada, N. Oyama, Langmuir 24 (2008) 8527-8532]. In contrast, C(12)A(m)G showed a decreasing tendency for self-assembly with increasing alkyl chain length, m, of the A(m) group up to m = 3, above which the tendency increased. Such changes in aggregation tendency of the surfactants were suggested to arise from an increased bulkiness of the hydrophilic part caused by the A(m) group, resulting in a decrease in the hydrogen bonding between the guanidine groups and an increase in micellization through the cooperative hydrophobic interaction between the hydrophilic groups. From the balance of these effects, the area of the hydrophilic part of C(12)A(4)G was the largest and the hydrogen bonding between the guanidine groups in C(12)A(4)G was weakened. It is suggested in guanidine-type surfactant that A(4) gave a similar aggregation tendency to traditional ionic surfactants and a weak effect for skin.     

Simulation of the flow of polymer blends in convergent channels

The method for the simulation of various cases of collisions between spherical solid particles in suspensions or emulsions (for example, in mixtures of polymers) moving in convergent flows is proposed. These flows arise in many technological schemes for the processing of polymers. The derived formulas make it possible to relate interparticle distances with the dimensions of particles and their volume fraction. The effect of the distribution of particles with respect to their dimensions and distances between them is considered. The flow lines are proposed to be described by two functions: (i) a parabolic dependence for a reservoir and (ii) a logarithmic dependence at a capillary inlet. The height of the conjugation of the above dependences appears to be similar for both flow lines. Under similar conditions, the number of collisions between particles and their rate dramatically increase after passage from a reservoir to a capillary as well as with a decrease in the radius of the particles (at a constant volume fraction). The experiment on microimaging of the frozen emulsion of PMMA in PS at different regions of convergent flow shows a fair qualitative correlation between experimental and calculated data.     

吡咯喹啉醌模型化合物与氨亲核加成的理论探讨

为了揭示辅酶PQQ结构与反应性的关系,在B3LYP/D95(d, p)水平上对一系列PQQ模型化合物及其类似物与氨的亲核加成进行了理论计算.结果表明:对单羰基体系,羰基碳的亲电性对反应能垒有重要的影响;对双羰基体系,过渡态中邻位羰基氧与亲核试剂氨上的H形成的氢键对反应的活化能起着关键的作用;稠合芳香环本身对反应的能垒影响不大,但当稠合杂环的1-位为可提供氢键受体的N原子时,由于N1与氨上H原子间可形成氢键而进一步降低反应的活化能.发现过渡态中被进攻羰基与氨上N原子之间形成的夹角(OCN)与活化能有良好的线性关系.     

The multiplicative version of the Wiener index

The classical Wiener index, W(G), is equal to the sum of the distances between all pairs of vertexes of a (molecular) graph, G. We now consider a related topological index, pi(G), equal to the product of distances between all pairs of vertexes of G. The basic properties of the pi index are established and its possible physicochemical applications examined. In the case of alkanes, pi and W are highly correlated; a slightly curvilinear correlation exists between In pi and W.     

On the aromaticity of annulenones

Application of our method of predicting aromaticity¹ shows that the behavior of the annulenones is intermediate between that of the fulvenes (a nonaromatic series) and the annulenes (a series with strong alternation between aromatic and antiaromatic).     

Acoustic determination of performance and equivalence of plasminogen activators

A reliable method for the measurement of different plasminogen activators is of great interest for both manufacturing and clinical medicine. A one-step assay based on a thickness shear mode acoustic sensor has been developed for this purpose. Two separate mixtures of substrates (fibrinogen and plasminogen) and enzymes (thrombin and the plasminogen activator) were mixed, and placed on the acoustic sensor surface. During the assay, the resonant frequency of a quartz crystal oscillating in the thickness shear mode was measured and used to find a characteristic clot dissolution time, from the sample addition to the time at the maximum dissolution rate. Calibrations of the acoustic assay were done for tissue-type plasminogen activator (t-PA) as well as for the other plasminogen activators: urokinase (u-PA); streptokinase (SK) and staphylokinase (SAK). All gave relative standard deviations of about 12%. Since the same method was used for all of the activators, their activities were compared, resolving the differences between their unit definitions. Linear relationships were found between urokinase and streptokinase which activate plasminogen directly and between t-PA and staphylokinase which require fibrin as a cofactor. The relationship between the groups was found to curve, indicating the difference between the two mechanisms. The acoustic method, therefore, may be used as a rapid and cost-effective reference method for the standardization and comparison of different plasminogen activators.     

The bromination of acetone. Application to multicomponent kinetic determinations

A very simple kinetic method is proposed for the resolution of mixtures of acetone and a second component. It is based on the reaction, at constant temperature, between bromine and acetone. This reaction can be regarded, under certain conditions, as pseudo-zero-order on the bromine concentration. To show the possibilities of the method, mixtures of acetone (between 2 and 20 x 10(-4) mol L(-1)) and either hydroquinone (between 0.4 and 2.2 x 10(-4) mol L(-1)) or resorcinol (between 0.1 and 10.7 x 10(-4) mol L(-1)) have been used with the concentration ratios [acetone]:[hydroquinone] ranging between 0.5 and 50 and [acetone]:[resorcinol] ranging between 2.8 and 200. No systematic errors were found to exist (90% confidence level) and random errors were mainly under 5%. The method can be extended to mixtures of acetone and a second component whose reaction with bromine is fast (phenols, aromatic amines, etc.).     

Shape-controlled synthesis of metal nanostructures: the case of silver

The concept of shape-controlled synthesis is discussed by investigating the growth mechanisms for silver nanocubes, nanowires, and nanospheres produced through a polymer-mediated polyol process. Experimental parameters, such as the concentration of AgNO(3) (the precursor to silver), the molar ratio between poly(vinylpyrrolidone) (PVP, the capping agent) and AgNO(3), and the strength of chemical interaction between PVP and various crystallographic planes of silver, were found to determine the crystallinity of seeds (e.g., single crystal versus decahedral multiply twinned particles). In turn, the crystallinity of a seed and the extent of the PVP coverage on the seed were both instrumental in controlling the morphology of final product. The ability to generate silver nanostructures with well-defined morphologies provides a great opportunity to experimentally and systematically study the relationship between their properties and geometric shapes.     

Rate of excitation energy transfer between fluorescent dyes and nanoparticles

Because of the sensitivity of the rate of Coulomb interaction induced long range resonance energy transfer (RET) on the distance between the donor (D) and the acceptor (A) molecules, the technique of FRET (fluorescence resonance energy transfer) is popularly termed as “spectroscopic ruler” and is increasingly being used in many areas of biological and material science. For example, the phenomenon is used to monitor the in vivo separation between different (bio)polymers/units of (bio)polymers and hence the dynamics of various biomolecular processes. In this work, we examine the distance and the orientation dependence of RET in three different systems: (i) between a conjugated polymer and a fluorescent dye, (ii) between a nanometal particle (NMP) and a fluorescent dye and (iii) between two NMP. We show that in all the three cases, the rate of RET follows a distance dependence of d^−σ where exponent σ approaches 6 at large distance d (Förster type dependence) but has a value varying from 3–4 at short to intermediate distances.     

Theoretical investigation of the magnetic interactions of Ni9 complexes

On the basis of density-functional theory (DFT) calculations, a theoretical analysis of the exchange interactions in Ni9L2(O2CMe)8{(2-py)2CO2}4, was performed, where L is a bridging ligand, OH- (1) or N3- (2). Each magnetic interaction between the Ni spin centers is analyzed for 1 and 2 in terms of exchange integrals (J values), orbital overlap integrals (T values) and natural orbitals. It was found that a J3 interaction, which is a magnetic interaction via the bridging ligand orbitals, mainly controls the whole magnetic properties, and the dominant interaction is a sigma-type orbital interaction between Ni dz2 orbitals. Further investigations on the magnetostructural correlations are performed on the J3 interactions using simplest Ni-L-Ni models. These models reproduced the magnetic interactions qualitatively well not only for the Ni9 complexes but also for other inorganic complexes. Strong correlations have been found between the magnetic orbital overlaps (T values) and the Ni-L-Ni angle. These results revealed that the difference of the magnetic properties between OH- and N3- is caused by the orbital overlap integral (T values) of the sigma-type J3 interaction pathway. The magnetic interactions are also discussed from a Hubbard model by evaluating the transfer integral (t) and on-site Coulomb integrals (U), in relation to the Heisenberg picture.     

A density functional theory study on the mechanism of the permanganate oxidation of substituted alkenes.

Oxidation of substituted alkenes by permanganate follows a (3 + 2) cycloaddition mechanism. DFT calculations (Becke3LYP/6-31G(d)) strongly favor the (3 + 2) pathway against a (2 + 2) pathway that proceeds through a metallaoxetane. The difference in free activation energy between the two pathways is around 40 to 45 kcal/mol for the nine compounds covered. The results for the (3 + 2) cycloaddition mechanism are in agreement with experimentally observed kinetic data reported earlier. Symmetric transition states are calculated for alkenes with at least one CH2 group between the double bond and the acid group, while all others are unsymmetrical due to the repulsion between the permanganate oxygens and the carboxylic oxygens. Steric bulk, introduced by the number and position of substituents at the double bond, has no significant effect on the activation energies. A higher level of theory (Becke3LYP/6-311G(d,p)) leads to a reduction of the rmsd between experimental and calculated values, but has little influence on the calculated geometries.     

Molecular simulation of interaction between passivated gold nanoparticles in supercritical CO2

Molecular dynamics simulations have been performed to study the potential of mean force (PMF) between passivated gold nanoparticles (NPs) in supercritical CO(2) (scCO(2)). The nanoparticle model consists of a 140 atom gold nanocore and a surface self-assembled monolayer, in which two kinds of fluorinated alkanethiols were considered. The molecular origin of the thermodynamics interaction and the solvation effect has been comprehensively studied. The simulation results demonstrate that increasing the solvent density and ligand length can enhance the repulsive feature of the free energy between the passivated Au nanoparticles in scCO(2), which is in good agreement with previous experimental results. The interaction forces between the two passivated NPs have been decomposed to reveal various contributions to the free energy. It was revealed that the interaction between capping ligands and the interaction between the capping ligands and scCO(2) solvent molecules cooperatively determine the total PMF. A thermodynamic entropy-energy analysis for each PMF contribution was used to explain the density dependence of PMF in scCO(2) fluid. Our simulation study is expected to provide a novel microscopic understanding of the effect of scCO(2) solvent on the interaction between passivated Au nanoparticles, which is helpful to the dispersion and preparation of functional metal nanoparticles in supercritical fluids.     

Spectroscopic Probe of the Distribution of Cationic Drug or Dye Between Anionic Polymers

Abstract

Knowledge of the distribution of a drug (or dye) between different biopolymers may be useful in understanding the mechanism of drug action. We have studied the distribution of drugs or dyes between different anionic polymers as model systems. Spectrophotometric and circular dichroism have been used as techniques to monitor the distribution of intercalating, partially intercalating, and nonintercalating cationic dyes or drugs between DNA and other anionic polymers. Both spectrophotometric and circular dichroic evidence indicates that the partially intercalating dye dimethylmethylene blue distributes itself between DNA and heparin with a preference for DNA. In the case of the intercalating drug actinomycin-D, DNA uses its intercalating ability to win heparin in competitive binding of the drug. The picture is somewhat different when pinacyanol (PCYN) chloride, a nonintercalating dye, is used as the ligand in the competitive binding of DNA and poly(styrene sulfonate) (PSS); DNA loses to PSS in competitive binding of this ligand. The equilibrium constant of the distribution of PCYN between DNA and PSS has been determined from a method developed here.     

Interaction of hexadecylbetainate chloride with biological relevant lipids

The present work investigates the interaction of hexadecylbetainate chloride (C(16)BC), a glycine betaine-based ester with palmitoyl-oleoyl-phosphatidylcholine (POPC), sphingomyelin (SM), and cholesterol (CHOL), three biological relevant lipids present in the outer leaflet of the mammalian plasma membrane. The binding affinity and the mixing behavior between the lipids and C(16)BC are discussed based on experimental (isothermal titration calorimetry (ITC) and Langmuir film balance) and molecular modeling studies. The results show that the interaction between C(16)BC and each lipid is thermodynamically favorable and does not affect the integrity of the lipid vesicles. The primary adsorption of C(16)BC into the lipid film is mainly governed by a hydrophobic effect. Once C(16)BC is inserted in the lipid film, the polar component of the interaction energy between C(16)BC and the lipid becomes predominant. Presence of CHOL increases the affinity of C(16)BC for membrane. This result can be explained by the optimal matching between C(16)BC and CHOL within the film rather by a change of membrane fluidity due to the presence of CHOL. The interaction between C(16)BC and SM is also favorable and gives rise to highly stable monolayers probably due to hydrogen bonds between their hydrophilic groups. The interaction of C(16)BC with POPC is less favorable but does not destabilize the mixed monolayer from a thermodynamic point of view. Interestingly, for all the monolayers investigated, the exclusion surface pressures are above the presumed lateral pressure of the plasma membranes suggesting that C(16)BC would be able to penetrate into mammalian plasma membranes in vivo. These results may serve as a useful basis in understanding the interaction of C(16)BC with real membranes.     

Flow-injection spectrophotometric determination of cyanate in bioremediation processes by use of immobilised inducible cyanase

A new flow injection (FI) method for photometric monitoring of cyanate in bioremediation processes using immobilised native cyanase is described. The method is based on the catalytic reaction between cyanate and bicarbonate to produce ammonia and carbon dioxide in the presence of an inducible native cyanase, immobilised in a reactor packed with glass beads. Two degrees of purification of the biocatalyst were used-heated cell-free extract and purified extract of cyanase from Pseudomonas pseudoalcaligenes CECT 5344. The ammonia produced by the enzymatic reaction is finally monitored photometrically at 700 nm using a modification of the conventional Berthelot method. The method furnishes different calibration curves depending on the degree of purification of the cyanase, with linear ranges between 1.23 and 616.50 micromol L(-1) ( r(2)=0.9979, n=7) and between 1.07 and 308.25 micro mol L(-1) ( r(2)= 0.9992, n=7) for the heated cell-free extract and the purified cyanase extract, respectively. No statistically significant differences between the samples were found in the precision study evaluated at two cyanate concentration levels using one-way analysis of variance. A sampling frequency of 15 h(-1) was achieved. The method was used to monitor cyanate consumption in a cyanate bioremediation tank inoculated with Pseudomonas pseudoalcaligenes CECT 5344 strain. The correlation between cyanate degradation and ammonia production was tested using a conventional method. Finally, the method was applied to different samples collected from the bioremediation tank using the standard addition method; recoveries between 85.9 and 97.4% were obtained.     

Differences of fluorine in cements determined by photometric methods after distillation and pyrolysis.

Using a spectrophotometric method after distillation separation is a standard test method widely employed for the determination of fluorine (F) in cement. Using a flow injection (FI) method after pyrolysis separation for quantification of fluorine in cement has recently been developed. Differences between the fluorine content values obtained by each method have been noted. This paper documents the differences between fluorine content (distillation F) measured spectrophotometrically after distillation and that (pyrolysis F) determined using the FI method after pyrolysis for fourteen commercial Portland cements and identifies a factor contributing to the differences between distillation F and pyrolysis F values. A highly significant relationship existed between distillation F and pyrolysis F values for fourteen cements (r(2) = 0.998, p < 0.001).     

Effect of chemical treatment of Kevlar fibers on mechanical interfacial properties of composites

In this work, the effects of chemical treatment on Kevlar 29 fibers have been studied in a composite system. The surface characteristics of Kevlar 29 fibers were characterized by pH, acid-base value, X-ray photoelectron spectroscopy (XPS), and FT-IR. The mechanical interfacial properties of the final composites were studied by interlaminar shear strength (ILSS), critical stress intensity factor (K(IC)), and specific fracture energy (G(IC)). Also, impact properties of the composites were investigated in the context of differentiating between initiation and propagation energies and ductile index (DI) along with maximum force and total energy. As a result, it was found that chemical treatment with phosphoric acid solution significantly affected the degree of adhesion at interfaces between fibers and resin matrix, resulting in improved mechanical interfacial strength in the composites. This was probably due to the presence of chemical polar groups on Kevlar surfaces, leading to an increment of interfacial binding force between fibers and matrix in a composite system.